Ggra6273.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6273.t1
Unique NameGgra6273.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:382541..383866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705445.1
Preferred nameETF1
PFAMseRF1_1,eRF1_2,eRF1_3
Max annot lvl2759|Eukaryota
KEGG koko:K03265,ko:K04043
KEGG TC1.A.33.1
KEGG Pathwayko03015,ko03018,ko04212,ko05152,map03015,map03018,map04212,map05152
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006417,GO:0006449,GO:0006464,GO:0006479,GO:0006518,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008213,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016149,GO:0018130,GO:0018444,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022411,GO:0023052,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0032774,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036211,GO:0036464,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051246,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990825,GO:1990904,GO:2000112
Evalue4.86e-217
EggNOG OGsCOG1503@1|root,KOG0688@2759|Eukaryota
Descriptiontranslation release factor activity
COG categoryJ
BRITEko00000,ko00001,ko03012,ko03019,ko03029,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6273Ggra6273Gracilaria gracilis GNS1m malegenetig00000879_pilon 382541..383866 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6273.t1.stop1Ggra6273.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 382541..382543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6273.t1.CDS1Ggra6273.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 382541..383866 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6273.t1.exon1Ggra6273.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 382541..383866 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6273.t1.start1Ggra6273.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 383864..383866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6273.t1Ggra6273.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 382541..383866 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6273.t1 ID=Ggra6273.t1|Name=Ggra6273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=442bp
MGEKDKGQDDDGDRAVQVWKIKKLIKALEQARGNGTSMISLIIPPRDQTS
RVNKMLSDEYGTASNIKSRVNRQSVLSAITSTQQRLKLYPKVPANGLVIY
CGTIMNDQNKEREVLVDFEPFKPINTSLYLCDNKFHTEALASLLESDEKF
GFIVMDGNGALFGLLTGNTRTVLHKFSVDLPKKHGRGGQSALRFARLRLE
KRHNFVRKVAEIAVTQFIPDGQKVNVTGLILAGSADFKTDLYNSELFDQR
LKAKVLKTVDVSYGGENGFNQAIDLAAETLGNVKFIQEKKLVQRYFDEIS
KDTNKYCFGVVDTMRALEQGAVEILILWENMEHTRIELENPQTGEKVIKI
LSKEQMQDMSNFVEKETGVELETRDTELFVDWMAANYKDYGTQLEFITDR
SQEGAQFVQGFGGIGGLMRYEVNFEAYEEPDEDEDWEDLLG*
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spliced messenger RNA

>Ggra6273.t1 ID=Ggra6273.t1|Name=Ggra6273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000879_pilon:382541..383866- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGAGAAAGATAAAGGCCAGGACGACGACGGCGACCGCGCCGTTCA
AGTATGGAAGATCAAGAAGCTCATAAAAGCTCTCGAGCAAGCGCGCGGAA
ACGGGACGAGTATGATCTCTCTCATCATCCCACCTCGCGACCAGACTAGT
CGTGTGAACAAGATGCTTAGTGATGAGTATGGCACTGCCTCCAATATCAA
GTCTCGTGTTAACCGCCAGTCTGTTCTGAGTGCTATTACCTCCACACAGC
AACGTCTTAAGCTTTACCCGAAGGTTCCTGCTAATGGCCTTGTCATTTAC
TGTGGCACTATCATGAACGACCAGAACAAGGAAAGGGAAGTTCTGGTCGA
TTTTGAGCCGTTCAAGCCCATAAATACATCACTGTATTTGTGCGATAACA
AGTTCCACACCGAAGCTCTTGCGAGCCTTCTTGAGTCCGACGAGAAGTTC
GGTTTTATAGTCATGGATGGAAATGGTGCTCTTTTTGGCCTTCTCACCGG
CAATACAAGGACGGTACTCCACAAATTCTCTGTCGATCTTCCGAAGAAGC
ATGGACGCGGTGGTCAGTCTGCTCTGCGTTTCGCACGTCTTCGTCTGGAA
AAGCGTCATAACTTTGTCCGGAAAGTTGCCGAAATCGCCGTGACTCAATT
CATTCCGGACGGTCAGAAAGTCAACGTTACGGGCCTCATTTTAGCTGGAT
CTGCTGACTTCAAAACGGATTTATATAACTCTGAGTTGTTCGACCAGAGA
TTAAAGGCCAAGGTCTTGAAGACAGTTGATGTAAGTTATGGTGGGGAGAA
TGGCTTTAACCAGGCCATTGATCTAGCAGCTGAGACTCTTGGTAACGTAA
AGTTCATCCAAGAAAAGAAGCTGGTGCAAAGGTATTTTGATGAAATATCA
AAGGATACGAACAAGTATTGCTTTGGGGTCGTAGATACCATGCGAGCCTT
AGAACAAGGTGCTGTTGAGATTCTTATTCTGTGGGAAAACATGGAGCACA
CAAGAATAGAGCTTGAGAATCCACAAACGGGGGAGAAAGTTATCAAGATT
CTTAGCAAGGAGCAAATGCAAGATATGTCCAACTTTGTCGAGAAGGAAAC
TGGGGTTGAACTAGAAACAAGGGATACAGAACTATTCGTAGACTGGATGG
CGGCTAACTATAAGGACTATGGTACTCAACTAGAGTTTATCACAGATCGC
TCTCAGGAAGGCGCGCAGTTTGTACAGGGATTCGGAGGTATTGGAGGTCT
TATGCGTTACGAAGTTAACTTCGAGGCATACGAAGAGCCTGATGAAGATG
AGGATTGGGAGGATCTCCTGGGTTAA
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protein sequence of Ggra6273.t1

>Ggra6273.t1 ID=Ggra6273.t1|Name=Ggra6273.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=442bp
MGEKDKGQDDDGDRAVQVWKIKKLIKALEQARGNGTSMISLIIPPRDQTS
RVNKMLSDEYGTASNIKSRVNRQSVLSAITSTQQRLKLYPKVPANGLVIY
CGTIMNDQNKEREVLVDFEPFKPINTSLYLCDNKFHTEALASLLESDEKF
GFIVMDGNGALFGLLTGNTRTVLHKFSVDLPKKHGRGGQSALRFARLRLE
KRHNFVRKVAEIAVTQFIPDGQKVNVTGLILAGSADFKTDLYNSELFDQR
LKAKVLKTVDVSYGGENGFNQAIDLAAETLGNVKFIQEKKLVQRYFDEIS
KDTNKYCFGVVDTMRALEQGAVEILILWENMEHTRIELENPQTGEKVIKI
LSKEQMQDMSNFVEKETGVELETRDTELFVDWMAANYKDYGTQLEFITDR
SQEGAQFVQGFGGIGGLMRYEVNFEAYEEPDEDEDWEDLLG*
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mRNA from alignment at tig00000879_pilon:382541..383866-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6273.t1 ID=Ggra6273.t1|Name=Ggra6273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000879_pilon:382541..383866- (Gracilaria gracilis GNS1m male)
ATGGGTGAGAAAGATAAAGGCCAGGACGACGACGGCGACCGCGCCGTTCA
AGTATGGAAGATCAAGAAGCTCATAAAAGCTCTCGAGCAAGCGCGCGGAA
ACGGGACGAGTATGATCTCTCTCATCATCCCACCTCGCGACCAGACTAGT
CGTGTGAACAAGATGCTTAGTGATGAGTATGGCACTGCCTCCAATATCAA
GTCTCGTGTTAACCGCCAGTCTGTTCTGAGTGCTATTACCTCCACACAGC
AACGTCTTAAGCTTTACCCGAAGGTTCCTGCTAATGGCCTTGTCATTTAC
TGTGGCACTATCATGAACGACCAGAACAAGGAAAGGGAAGTTCTGGTCGA
TTTTGAGCCGTTCAAGCCCATAAATACATCACTGTATTTGTGCGATAACA
AGTTCCACACCGAAGCTCTTGCGAGCCTTCTTGAGTCCGACGAGAAGTTC
GGTTTTATAGTCATGGATGGAAATGGTGCTCTTTTTGGCCTTCTCACCGG
CAATACAAGGACGGTACTCCACAAATTCTCTGTCGATCTTCCGAAGAAGC
ATGGACGCGGTGGTCAGTCTGCTCTGCGTTTCGCACGTCTTCGTCTGGAA
AAGCGTCATAACTTTGTCCGGAAAGTTGCCGAAATCGCCGTGACTCAATT
CATTCCGGACGGTCAGAAAGTCAACGTTACGGGCCTCATTTTAGCTGGAT
CTGCTGACTTCAAAACGGATTTATATAACTCTGAGTTGTTCGACCAGAGA
TTAAAGGCCAAGGTCTTGAAGACAGTTGATGTAAGTTATGGTGGGGAGAA
TGGCTTTAACCAGGCCATTGATCTAGCAGCTGAGACTCTTGGTAACGTAA
AGTTCATCCAAGAAAAGAAGCTGGTGCAAAGGTATTTTGATGAAATATCA
AAGGATACGAACAAGTATTGCTTTGGGGTCGTAGATACCATGCGAGCCTT
AGAACAAGGTGCTGTTGAGATTCTTATTCTGTGGGAAAACATGGAGCACA
CAAGAATAGAGCTTGAGAATCCACAAACGGGGGAGAAAGTTATCAAGATT
CTTAGCAAGGAGCAAATGCAAGATATGTCCAACTTTGTCGAGAAGGAAAC
TGGGGTTGAACTAGAAACAAGGGATACAGAACTATTCGTAGACTGGATGG
CGGCTAACTATAAGGACTATGGTACTCAACTAGAGTTTATCACAGATCGC
TCTCAGGAAGGCGCGCAGTTTGTACAGGGATTCGGAGGTATTGGAGGTCT
TATGCGTTACGAAGTTAACTTCGAGGCATACGAAGAGCCTGATGAAGATG
AGGATTGGGAGGATCTCCTGGGTTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:382541..383866-

>Ggra6273.t1 ID=Ggra6273.t1|Name=Ggra6273.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000879_pilon:382541..383866- (Gracilaria gracilis GNS1m male)
ATGGGTGAGAAAGATAAAGGCCAGGACGACGACGGCGACCGCGCCGTTCA
AGTATGGAAGATCAAGAAGCTCATAAAAGCTCTCGAGCAAGCGCGCGGAA
ACGGGACGAGTATGATCTCTCTCATCATCCCACCTCGCGACCAGACTAGT
CGTGTGAACAAGATGCTTAGTGATGAGTATGGCACTGCCTCCAATATCAA
GTCTCGTGTTAACCGCCAGTCTGTTCTGAGTGCTATTACCTCCACACAGC
AACGTCTTAAGCTTTACCCGAAGGTTCCTGCTAATGGCCTTGTCATTTAC
TGTGGCACTATCATGAACGACCAGAACAAGGAAAGGGAAGTTCTGGTCGA
TTTTGAGCCGTTCAAGCCCATAAATACATCACTGTATTTGTGCGATAACA
AGTTCCACACCGAAGCTCTTGCGAGCCTTCTTGAGTCCGACGAGAAGTTC
GGTTTTATAGTCATGGATGGAAATGGTGCTCTTTTTGGCCTTCTCACCGG
CAATACAAGGACGGTACTCCACAAATTCTCTGTCGATCTTCCGAAGAAGC
ATGGACGCGGTGGTCAGTCTGCTCTGCGTTTCGCACGTCTTCGTCTGGAA
AAGCGTCATAACTTTGTCCGGAAAGTTGCCGAAATCGCCGTGACTCAATT
CATTCCGGACGGTCAGAAAGTCAACGTTACGGGCCTCATTTTAGCTGGAT
CTGCTGACTTCAAAACGGATTTATATAACTCTGAGTTGTTCGACCAGAGA
TTAAAGGCCAAGGTCTTGAAGACAGTTGATGTAAGTTATGGTGGGGAGAA
TGGCTTTAACCAGGCCATTGATCTAGCAGCTGAGACTCTTGGTAACGTAA
AGTTCATCCAAGAAAAGAAGCTGGTGCAAAGGTATTTTGATGAAATATCA
AAGGATACGAACAAGTATTGCTTTGGGGTCGTAGATACCATGCGAGCCTT
AGAACAAGGTGCTGTTGAGATTCTTATTCTGTGGGAAAACATGGAGCACA
CAAGAATAGAGCTTGAGAATCCACAAACGGGGGAGAAAGTTATCAAGATT
CTTAGCAAGGAGCAAATGCAAGATATGTCCAACTTTGTCGAGAAGGAAAC
TGGGGTTGAACTAGAAACAAGGGATACAGAACTATTCGTAGACTGGATGG
CGGCTAACTATAAGGACTATGGTACTCAACTAGAGTTTATCACAGATCGC
TCTCAGGAAGGCGCGCAGTTTGTACAGGGATTCGGAGGTATTGGAGGTCT
TATGCGTTACGAAGTTAACTTCGAGGCATACGAAGAGCCTGATGAAGATG
AGGATTGGGAGGATCTCCTGGGTTAA
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