Ggra6271.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6271.t1
Unique Name	Ggra6271.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	515

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:379674..381218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6271	Ggra6271	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 379674..381218 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6271.t1.start1	Ggra6271.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 379674..379676 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6271.t1.CDS1	Ggra6271.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 379674..381218 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6271.t1.exon1	Ggra6271.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 379674..381218 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6271.t1.stop1	Ggra6271.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 381216..381218 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6271.t1	Ggra6271.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 379674..381218 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:379674..381218+
coding sequence from alignment at tig00000879_pilon:379674..381218+

mRNA sequence

>Ggra6271.t1 ID=Ggra6271.t1|Name=Ggra6271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MHPKPLSASLEHRVLRQYIVHSSSAFTSPIPAPRRPMSSFILEAPVYEIQ
RKLKRKLPWGNVAAGLVSLLGRYSTGLSLSVACDEILAQNQFQPQSEEQY
THHRAAIVRVTAEPPEIWLIQLTDGRYVAFYAHSKLLSRFRPGVSFFFPS
KALRFASHEDVQAEALALAGKALSSSSVLSAALDEGDRARSPVDIAKLNH
NSNRPVETSSKNPASLLPSLSALVLPIATVLIDLDSLPANTLNLTEPIES
FTLQRVWNERSLAPGFIFARVVQTSQEKKHIRIQDHSSDPSNTQPSVLWL
LHEHQYSYADMVEEGCFVLLERPAVQPNGNSFFVVANENTICFYRKPSSA
VKINLWSVPLATVIVPESPPKKRRRRDPDLSQSLTPVDSRVLARLLEPHL
QKELVVVSEVERLPIVDDVHLAEIQCPQNVLIRIGGAEMVKRCKSMSPGD
QLLFEGVRWVAASTTLGSQTSAGWAASSVHNISALSSVLRSLSAGSVSGV
YRQVKAMNYLVEGC*

spliced messenger RNA

>Ggra6271.t1 ID=Ggra6271.t1|Name=Ggra6271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000879_pilon:379674..381218+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCGAAACCCCTTTCGGCCAGTCTTGAGCACCGGGTTCTTCGGCA
ATACATCGTCCACAGCAGCTCCGCGTTCACCTCCCCGATTCCGGCGCCAC
GCCGTCCAATGTCTTCCTTCATACTAGAAGCCCCCGTTTACGAAATCCAG
AGGAAGCTCAAACGTAAACTTCCGTGGGGAAATGTGGCAGCCGGCCTAGT
ATCGCTGCTCGGTCGATATTCCACAGGTCTTTCATTGTCGGTCGCTTGCG
ACGAAATCCTTGCTCAAAATCAGTTCCAGCCGCAATCAGAGGAACAGTAC
ACCCATCATCGTGCAGCTATCGTTCGGGTCACCGCAGAGCCACCTGAGAT
ATGGCTCATTCAGTTGACAGATGGTCGATACGTCGCGTTCTACGCTCACT
CGAAACTTCTCTCTCGCTTTAGACCCGGCGTGTCGTTTTTCTTCCCGTCG
AAAGCATTGAGATTTGCATCCCATGAAGATGTTCAAGCCGAAGCTTTGGC
GCTCGCTGGGAAGGCTTTGAGCTCATCATCTGTGCTAAGTGCAGCTTTGG
ATGAGGGTGATCGTGCACGGAGTCCGGTGGACATTGCAAAACTGAATCAC
AACTCCAATAGACCTGTTGAAACATCATCGAAGAACCCCGCATCCCTCCT
TCCATCGCTTTCGGCTCTCGTCTTACCTATTGCCACCGTATTAATAGACC
TGGATTCTCTGCCGGCGAACACGTTGAACCTCACGGAACCAATTGAAAGC
TTCACGTTGCAGCGTGTTTGGAACGAGCGGTCTCTCGCTCCGGGTTTCAT
TTTTGCCCGTGTTGTGCAAACAAGTCAGGAAAAGAAGCACATTAGAATAC
AAGACCACTCTTCGGACCCGTCAAACACACAGCCTTCAGTGTTATGGTTG
TTGCATGAGCATCAATACTCGTATGCAGATATGGTTGAGGAAGGGTGCTT
TGTGCTTCTTGAGAGACCCGCTGTGCAACCGAATGGCAACTCATTTTTTG
TCGTTGCAAACGAAAACACTATTTGTTTTTACAGGAAGCCTTCTTCAGCG
GTCAAGATCAACCTCTGGTCAGTTCCACTGGCAACAGTCATCGTACCTGA
ATCCCCACCTAAAAAGCGTCGACGACGCGATCCCGATCTTTCACAATCAC
TGACTCCTGTTGATTCTCGCGTTTTGGCTCGACTCTTGGAACCGCATCTG
CAGAAGGAGTTGGTTGTAGTTTCTGAAGTAGAACGCCTACCAATCGTCGA
TGACGTACATCTTGCCGAGATTCAATGCCCTCAGAACGTGCTTATTCGCA
TTGGTGGTGCAGAAATGGTCAAGCGTTGTAAATCTATGTCACCTGGGGAC
CAGCTTTTGTTTGAAGGAGTACGATGGGTAGCAGCAAGTACTACTCTTGG
AAGTCAGACATCGGCAGGATGGGCAGCGTCTTCTGTCCATAACATATCTG
CTTTGAGTTCAGTTCTACGGTCTTTGTCCGCTGGATCGGTTTCCGGAGTC
TATCGTCAAGTGAAAGCTATGAATTATTTGGTAGAAGGCTGCTGA

protein sequence of Ggra6271.t1

>Ggra6271.t1 ID=Ggra6271.t1|Name=Ggra6271.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MHPKPLSASLEHRVLRQYIVHSSSAFTSPIPAPRRPMSSFILEAPVYEIQ
RKLKRKLPWGNVAAGLVSLLGRYSTGLSLSVACDEILAQNQFQPQSEEQY
THHRAAIVRVTAEPPEIWLIQLTDGRYVAFYAHSKLLSRFRPGVSFFFPS
KALRFASHEDVQAEALALAGKALSSSSVLSAALDEGDRARSPVDIAKLNH
NSNRPVETSSKNPASLLPSLSALVLPIATVLIDLDSLPANTLNLTEPIES
FTLQRVWNERSLAPGFIFARVVQTSQEKKHIRIQDHSSDPSNTQPSVLWL
LHEHQYSYADMVEEGCFVLLERPAVQPNGNSFFVVANENTICFYRKPSSA
VKINLWSVPLATVIVPESPPKKRRRRDPDLSQSLTPVDSRVLARLLEPHL
QKELVVVSEVERLPIVDDVHLAEIQCPQNVLIRIGGAEMVKRCKSMSPGD
QLLFEGVRWVAASTTLGSQTSAGWAASSVHNISALSSVLRSLSAGSVSGV
YRQVKAMNYLVEGC*

mRNA from alignment at tig00000879_pilon:379674..381218+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6271.t1 ID=Ggra6271.t1|Name=Ggra6271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000879_pilon:379674..381218+ (Gracilaria gracilis GNS1m male)
ATGCATCCGAAACCCCTTTCGGCCAGTCTTGAGCACCGGGTTCTTCGGCA
ATACATCGTCCACAGCAGCTCCGCGTTCACCTCCCCGATTCCGGCGCCAC
GCCGTCCAATGTCTTCCTTCATACTAGAAGCCCCCGTTTACGAAATCCAG
AGGAAGCTCAAACGTAAACTTCCGTGGGGAAATGTGGCAGCCGGCCTAGT
ATCGCTGCTCGGTCGATATTCCACAGGTCTTTCATTGTCGGTCGCTTGCG
ACGAAATCCTTGCTCAAAATCAGTTCCAGCCGCAATCAGAGGAACAGTAC
ACCCATCATCGTGCAGCTATCGTTCGGGTCACCGCAGAGCCACCTGAGAT
ATGGCTCATTCAGTTGACAGATGGTCGATACGTCGCGTTCTACGCTCACT
CGAAACTTCTCTCTCGCTTTAGACCCGGCGTGTCGTTTTTCTTCCCGTCG
AAAGCATTGAGATTTGCATCCCATGAAGATGTTCAAGCCGAAGCTTTGGC
GCTCGCTGGGAAGGCTTTGAGCTCATCATCTGTGCTAAGTGCAGCTTTGG
ATGAGGGTGATCGTGCACGGAGTCCGGTGGACATTGCAAAACTGAATCAC
AACTCCAATAGACCTGTTGAAACATCATCGAAGAACCCCGCATCCCTCCT
TCCATCGCTTTCGGCTCTCGTCTTACCTATTGCCACCGTATTAATAGACC
TGGATTCTCTGCCGGCGAACACGTTGAACCTCACGGAACCAATTGAAAGC
TTCACGTTGCAGCGTGTTTGGAACGAGCGGTCTCTCGCTCCGGGTTTCAT
TTTTGCCCGTGTTGTGCAAACAAGTCAGGAAAAGAAGCACATTAGAATAC
AAGACCACTCTTCGGACCCGTCAAACACACAGCCTTCAGTGTTATGGTTG
TTGCATGAGCATCAATACTCGTATGCAGATATGGTTGAGGAAGGGTGCTT
TGTGCTTCTTGAGAGACCCGCTGTGCAACCGAATGGCAACTCATTTTTTG
TCGTTGCAAACGAAAACACTATTTGTTTTTACAGGAAGCCTTCTTCAGCG
GTCAAGATCAACCTCTGGTCAGTTCCACTGGCAACAGTCATCGTACCTGA
ATCCCCACCTAAAAAGCGTCGACGACGCGATCCCGATCTTTCACAATCAC
TGACTCCTGTTGATTCTCGCGTTTTGGCTCGACTCTTGGAACCGCATCTG
CAGAAGGAGTTGGTTGTAGTTTCTGAAGTAGAACGCCTACCAATCGTCGA
TGACGTACATCTTGCCGAGATTCAATGCCCTCAGAACGTGCTTATTCGCA
TTGGTGGTGCAGAAATGGTCAAGCGTTGTAAATCTATGTCACCTGGGGAC
CAGCTTTTGTTTGAAGGAGTACGATGGGTAGCAGCAAGTACTACTCTTGG
AAGTCAGACATCGGCAGGATGGGCAGCGTCTTCTGTCCATAACATATCTG
CTTTGAGTTCAGTTCTACGGTCTTTGTCCGCTGGATCGGTTTCCGGAGTC
TATCGTCAAGTGAAAGCTATGAATTATTTGGTAGAAGGCTGCTGA

Coding sequence (CDS) from alignment at tig00000879_pilon:379674..381218+

>Ggra6271.t1 ID=Ggra6271.t1|Name=Ggra6271.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000879_pilon:379674..381218+ (Gracilaria gracilis GNS1m male)
ATGCATCCGAAACCCCTTTCGGCCAGTCTTGAGCACCGGGTTCTTCGGCA
ATACATCGTCCACAGCAGCTCCGCGTTCACCTCCCCGATTCCGGCGCCAC
GCCGTCCAATGTCTTCCTTCATACTAGAAGCCCCCGTTTACGAAATCCAG
AGGAAGCTCAAACGTAAACTTCCGTGGGGAAATGTGGCAGCCGGCCTAGT
ATCGCTGCTCGGTCGATATTCCACAGGTCTTTCATTGTCGGTCGCTTGCG
ACGAAATCCTTGCTCAAAATCAGTTCCAGCCGCAATCAGAGGAACAGTAC
ACCCATCATCGTGCAGCTATCGTTCGGGTCACCGCAGAGCCACCTGAGAT
ATGGCTCATTCAGTTGACAGATGGTCGATACGTCGCGTTCTACGCTCACT
CGAAACTTCTCTCTCGCTTTAGACCCGGCGTGTCGTTTTTCTTCCCGTCG
AAAGCATTGAGATTTGCATCCCATGAAGATGTTCAAGCCGAAGCTTTGGC
GCTCGCTGGGAAGGCTTTGAGCTCATCATCTGTGCTAAGTGCAGCTTTGG
ATGAGGGTGATCGTGCACGGAGTCCGGTGGACATTGCAAAACTGAATCAC
AACTCCAATAGACCTGTTGAAACATCATCGAAGAACCCCGCATCCCTCCT
TCCATCGCTTTCGGCTCTCGTCTTACCTATTGCCACCGTATTAATAGACC
TGGATTCTCTGCCGGCGAACACGTTGAACCTCACGGAACCAATTGAAAGC
TTCACGTTGCAGCGTGTTTGGAACGAGCGGTCTCTCGCTCCGGGTTTCAT
TTTTGCCCGTGTTGTGCAAACAAGTCAGGAAAAGAAGCACATTAGAATAC
AAGACCACTCTTCGGACCCGTCAAACACACAGCCTTCAGTGTTATGGTTG
TTGCATGAGCATCAATACTCGTATGCAGATATGGTTGAGGAAGGGTGCTT
TGTGCTTCTTGAGAGACCCGCTGTGCAACCGAATGGCAACTCATTTTTTG
TCGTTGCAAACGAAAACACTATTTGTTTTTACAGGAAGCCTTCTTCAGCG
GTCAAGATCAACCTCTGGTCAGTTCCACTGGCAACAGTCATCGTACCTGA
ATCCCCACCTAAAAAGCGTCGACGACGCGATCCCGATCTTTCACAATCAC
TGACTCCTGTTGATTCTCGCGTTTTGGCTCGACTCTTGGAACCGCATCTG
CAGAAGGAGTTGGTTGTAGTTTCTGAAGTAGAACGCCTACCAATCGTCGA
TGACGTACATCTTGCCGAGATTCAATGCCCTCAGAACGTGCTTATTCGCA
TTGGTGGTGCAGAAATGGTCAAGCGTTGTAAATCTATGTCACCTGGGGAC
CAGCTTTTGTTTGAAGGAGTACGATGGGTAGCAGCAAGTACTACTCTTGG
AAGTCAGACATCGGCAGGATGGGCAGCGTCTTCTGTCCATAACATATCTG
CTTTGAGTTCAGTTCTACGGTCTTTGTCCGCTGGATCGGTTTCCGGAGTC
TATCGTCAAGTGAAAGCTATGAATTATTTGGTAGAAGGCTGCTGA