Ggra6261.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6261.t1
Unique NameGgra6261.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:356366..357799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT541CT
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Evalue6.86e-42
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6261Ggra6261Gracilaria gracilis GNS1m malegenetig00000879_pilon 356366..357799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6261.t1Ggra6261.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 356366..357799 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6261.t1.start1Ggra6261.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 356366..356368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6261.t1.CDS1Ggra6261.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 356366..356921 +
Ggra6261.t1.CDS2Ggra6261.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 357032..357086 +
Ggra6261.t1.CDS3Ggra6261.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000879_pilon 357148..357799 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6261.t1.exon1Ggra6261.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 356366..356921 +
Ggra6261.t1.exon2Ggra6261.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 357032..357086 +
Ggra6261.t1.exon3Ggra6261.t1.exon3Gracilaria gracilis GNS1m maleexontig00000879_pilon 357148..357799 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6261.t1.intron1Ggra6261.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 356922..357031 +
Ggra6261.t1.intron2Ggra6261.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000879_pilon 357087..357147 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6261.t1.stop1Ggra6261.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 357797..357799 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6261.t1 ID=Ggra6261.t1|Name=Ggra6261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MKRPRVRCQMPDATGDVGAGERASGADVRPGELTVDEVCDASDTGHMSDT
RPKRQVTRRAFVALAAVVALGALPPSSPPPAEAIELAPTPINPYARRRRN
RAYQRYAEQIEQSLEKAGVADFEKVVKAGGGGISVSYRIAGFAAFVASAL
STAVVHPIDSIKTRMQARAARLTKAEPALFENLYNGLALAHVYGCWRAGR
CHWNWSSALRDAFLTPSGRKASIVAWQAVLLRDVPYGGLQIMLYEFGKLM
LLSHPQVFNGYFANGGVMADVFVGASAGALAAMLTTPADVLVTRLSVREA
SSKSESASPGIVATAKQILLTEGVAGFFRGTLQRGVYYAPLIGLFFALYE
FSRQSLSDPNALIASVMHAERMVLADWNALPAQLSHAYQTLVPYLTALVW
LISDQLPLVLSFASMNGGQL*
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spliced messenger RNA

>Ggra6261.t1 ID=Ggra6261.t1|Name=Ggra6261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000879_pilon:356366..357799+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGGCCGCGCGTGCGCTGTCAAATGCCGGATGCAACGGGTGATGT
AGGAGCTGGTGAACGTGCGAGTGGCGCAGATGTGCGGCCAGGGGAGCTGA
CTGTTGATGAGGTTTGCGATGCGTCGGACACCGGCCACATGTCGGACACC
CGGCCGAAGCGTCAAGTGACTCGACGCGCGTTCGTGGCGCTGGCGGCTGT
TGTGGCGTTGGGTGCGTTGCCGCCGTCTTCTCCGCCGCCGGCAGAAGCGA
TTGAATTGGCGCCTACTCCGATCAACCCTTATGCCAGGCGTCGTCGTAAC
CGCGCGTATCAGCGATATGCCGAGCAAATCGAGCAGAGCCTTGAGAAGGC
CGGCGTCGCCGACTTTGAAAAGGTTGTCAAGGCAGGTGGTGGTGGAATTA
GCGTCAGTTATCGAATCGCCGGCTTTGCTGCTTTTGTTGCGAGTGCCCTT
TCTACCGCCGTTGTTCACCCGATTGATAGCATCAAGACCAGGATGCAGGC
CAGGGCCGCTCGTCTCACTAAGGCTGAGCCAGCGCTCTTCGAAAACTTGT
ACAATGGACTTGCCCTTGCTCACGTTTATGGTTGCTGGCGCGCTGGGCGA
TGCCATTGGAACTGGAGCTCTGCACTTCGGGATGCCTTTCTCACTCCTTC
CGGGCGAAAGGCTTCTATCGTCGCCTGGCAAGCTGTCCTTCTTCGCGACG
TGCCCTATGGTGGTCTTCAGATCATGCTGTACGAGTTTGGAAAGCTCATG
CTTCTCAGCCATCCACAAGTGTTCAACGGCTATTTTGCCAACGGCGGTGT
CATGGCTGATGTGTTTGTCGGAGCGAGTGCTGGCGCTCTTGCTGCCATGC
TTACCACGCCTGCTGATGTTCTTGTCACTCGTCTCAGCGTCCGTGAAGCC
TCATCCAAATCGGAGAGCGCCTCGCCCGGCATTGTTGCCACAGCCAAACA
AATTTTGCTCACGGAAGGTGTTGCGGGATTCTTCAGAGGAACGTTGCAAA
GAGGAGTGTACTACGCACCTCTCATCGGTCTGTTCTTTGCGCTTTACGAA
TTCAGCCGACAGTCGTTGTCGGATCCTAATGCTCTCATCGCGTCGGTCAT
GCACGCCGAGAGAATGGTGTTGGCTGACTGGAATGCTTTGCCTGCACAGC
TTTCACATGCTTATCAAACGCTTGTCCCTTATTTGACTGCTCTTGTGTGG
CTTATTTCGGACCAGCTACCTTTAGTTTTGAGTTTTGCTTCTATGAATGG
TGGGCAGTTGTGA
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protein sequence of Ggra6261.t1

>Ggra6261.t1 ID=Ggra6261.t1|Name=Ggra6261.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MKRPRVRCQMPDATGDVGAGERASGADVRPGELTVDEVCDASDTGHMSDT
RPKRQVTRRAFVALAAVVALGALPPSSPPPAEAIELAPTPINPYARRRRN
RAYQRYAEQIEQSLEKAGVADFEKVVKAGGGGISVSYRIAGFAAFVASAL
STAVVHPIDSIKTRMQARAARLTKAEPALFENLYNGLALAHVYGCWRAGR
CHWNWSSALRDAFLTPSGRKASIVAWQAVLLRDVPYGGLQIMLYEFGKLM
LLSHPQVFNGYFANGGVMADVFVGASAGALAAMLTTPADVLVTRLSVREA
SSKSESASPGIVATAKQILLTEGVAGFFRGTLQRGVYYAPLIGLFFALYE
FSRQSLSDPNALIASVMHAERMVLADWNALPAQLSHAYQTLVPYLTALVW
LISDQLPLVLSFASMNGGQL*
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mRNA from alignment at tig00000879_pilon:356366..357799+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6261.t1 ID=Ggra6261.t1|Name=Ggra6261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000879_pilon:356366..357799+ (Gracilaria gracilis GNS1m male)
ATGAAACGGCCGCGCGTGCGCTGTCAAATGCCGGATGCAACGGGTGATGT
AGGAGCTGGTGAACGTGCGAGTGGCGCAGATGTGCGGCCAGGGGAGCTGA
CTGTTGATGAGGTTTGCGATGCGTCGGACACCGGCCACATGTCGGACACC
CGGCCGAAGCGTCAAGTGACTCGACGCGCGTTCGTGGCGCTGGCGGCTGT
TGTGGCGTTGGGTGCGTTGCCGCCGTCTTCTCCGCCGCCGGCAGAAGCGA
TTGAATTGGCGCCTACTCCGATCAACCCTTATGCCAGGCGTCGTCGTAAC
CGCGCGTATCAGCGATATGCCGAGCAAATCGAGCAGAGCCTTGAGAAGGC
CGGCGTCGCCGACTTTGAAAAGGTTGTCAAGGCAGGTGGTGGTGGAATTA
GCGTCAGTTATCGAATCGCCGGCTTTGCTGCTTTTGTTGCGAGTGCCCTT
TCTACCGCCGTTGTTCACCCGATTGATAGCATCAAGACCAGGATGCAGGC
CAGGGCCGCTCGTCTCACTAAGGCTGAGCCAGCGCTCTTCGAAAACTTGT
ACAATGGTATCTTCAGCAATATTCTCAAGGAAGCCCCGAATGCCGCAATC
TATCTGGCTGTGTATGAGCTGTGCAAATCCATCTTAACCAACCTGTCTTT
CACCTCCTTCTTTCAGGACTTGCCCTTGCTCACGTTTATGGTTGCTGGCG
CGCTGGGCGATGCCATTGGAAGTGTTGTGCGGGTGCCTGCTGAAATCGTC
AACAAGCGTCTGCAAATCGGTGTCAATTCCAGCTGGAGCTCTGCACTTCG
GGATGCCTTTCTCACTCCTTCCGGGCGAAAGGCTTCTATCGTCGCCTGGC
AAGCTGTCCTTCTTCGCGACGTGCCCTATGGTGGTCTTCAGATCATGCTG
TACGAGTTTGGAAAGCTCATGCTTCTCAGCCATCCACAAGTGTTCAACGG
CTATTTTGCCAACGGCGGTGTCATGGCTGATGTGTTTGTCGGAGCGAGTG
CTGGCGCTCTTGCTGCCATGCTTACCACGCCTGCTGATGTTCTTGTCACT
CGTCTCAGCGTCCGTGAAGCCTCATCCAAATCGGAGAGCGCCTCGCCCGG
CATTGTTGCCACAGCCAAACAAATTTTGCTCACGGAAGGTGTTGCGGGAT
TCTTCAGAGGAACGTTGCAAAGAGGAGTGTACTACGCACCTCTCATCGGT
CTGTTCTTTGCGCTTTACGAATTCAGCCGACAGTCGTTGTCGGATCCTAA
TGCTCTCATCGCGTCGGTCATGCACGCCGAGAGAATGGTGTTGGCTGACT
GGAATGCTTTGCCTGCACAGCTTTCACATGCTTATCAAACGCTTGTCCCT
TATTTGACTGCTCTTGTGTGGCTTATTTCGGACCAGCTACCTTTAGTTTT
GAGTTTTGCTTCTATGAATGGTGGGCAGTTGTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:356366..357799+

>Ggra6261.t1 ID=Ggra6261.t1|Name=Ggra6261.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000879_pilon:356366..357799+ (Gracilaria gracilis GNS1m male)
ATGAAACGGCCGCGCGTGCGCTGTCAAATGCCGGATGCAACGGGTGATGT
AGGAGCTGGTGAACGTGCGAGTGGCGCAGATGTGCGGCCAGGGGAGCTGA
CTGTTGATGAGGTTTGCGATGCGTCGGACACCGGCCACATGTCGGACACC
CGGCCGAAGCGTCAAGTGACTCGACGCGCGTTCGTGGCGCTGGCGGCTGT
TGTGGCGTTGGGTGCGTTGCCGCCGTCTTCTCCGCCGCCGGCAGAAGCGA
TTGAATTGGCGCCTACTCCGATCAACCCTTATGCCAGGCGTCGTCGTAAC
CGCGCGTATCAGCGATATGCCGAGCAAATCGAGCAGAGCCTTGAGAAGGC
CGGCGTCGCCGACTTTGAAAAGGTTGTCAAGGCAGGTGGTGGTGGAATTA
GCGTCAGTTATCGAATCGCCGGCTTTGCTGCTTTTGTTGCGAGTGCCCTT
TCTACCGCCGTTGTTCACCCGATTGATAGCATCAAGACCAGGATGCAGGC
CAGGGCCGCTCGTCTCACTAAGGCTGAGCCAGCGCTCTTCGAAAACTTGT
ACAATGGACTTGCCCTTGCTCACGTTTATGGTTGCTGGCGCGCTGGGCGA
TGCCATTGGAACTGGAGCTCTGCACTTCGGGATGCCTTTCTCACTCCTTC
CGGGCGAAAGGCTTCTATCGTCGCCTGGCAAGCTGTCCTTCTTCGCGACG
TGCCCTATGGTGGTCTTCAGATCATGCTGTACGAGTTTGGAAAGCTCATG
CTTCTCAGCCATCCACAAGTGTTCAACGGCTATTTTGCCAACGGCGGTGT
CATGGCTGATGTGTTTGTCGGAGCGAGTGCTGGCGCTCTTGCTGCCATGC
TTACCACGCCTGCTGATGTTCTTGTCACTCGTCTCAGCGTCCGTGAAGCC
TCATCCAAATCGGAGAGCGCCTCGCCCGGCATTGTTGCCACAGCCAAACA
AATTTTGCTCACGGAAGGTGTTGCGGGATTCTTCAGAGGAACGTTGCAAA
GAGGAGTGTACTACGCACCTCTCATCGGTCTGTTCTTTGCGCTTTACGAA
TTCAGCCGACAGTCGTTGTCGGATCCTAATGCTCTCATCGCGTCGGTCAT
GCACGCCGAGAGAATGGTGTTGGCTGACTGGAATGCTTTGCCTGCACAGC
TTTCACATGCTTATCAAACGCTTGTCCCTTATTTGACTGCTCTTGTGTGG
CTTATTTCGGACCAGCTACCTTTAGTTTTGAGTTTTGCTTCTATGAATGG
TGGGCAGTTGTGA
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