Ggra6255.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6255.t1
Unique NameGgra6255.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:333486..334133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1394178.AWOO02000016_gene6846
PFAMsAcetyltransf_1
Max annot lvl201174|Actinobacteria
Evalue2.61e-31
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,2I9Y3@201174|Actinobacteria,4ER9I@85012|Streptosporangiales
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6255Ggra6255Gracilaria gracilis GNS1m malegenetig00000879_pilon 333486..334133 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6255.t1.start1Ggra6255.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 333486..333488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6255.t1.CDS1Ggra6255.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 333486..334133 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6255.t1.exon1Ggra6255.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 333486..334133 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6255.t1.stop1Ggra6255.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 334131..334133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6255.t1Ggra6255.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 333486..334133 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6255.t1 ID=Ggra6255.t1|Name=Ggra6255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp
MAPESKSILESDSMRPNIQRQDIPRLASSLASAFEDDPFFRYMHGPKAAH
VYKKNLIFFSAVLRTELRGVPKHTTINASDDKSCVVIWNHVDKWQVPETL
DVLVATFRAFGWRAFHAASTMNQLKKEHPAQPHMFLSLLGTRKENQGKGT
GSAVISPMLRQCDRDGTAVYLESSNKNNIRFYERHGFKVLGNITGLPSDC
PPIFSLWRDPKRLQH*
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spliced messenger RNA

>Ggra6255.t1 ID=Ggra6255.t1|Name=Ggra6255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000879_pilon:333486..334133+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGAATCGAAATCCATCCTCGAGTCCGACAGCATGCGCCCCAA
CATACAGAGGCAAGATATACCCCGTCTCGCCTCGTCATTAGCCTCTGCTT
TCGAAGACGACCCATTCTTCCGGTATATGCATGGACCAAAAGCCGCTCAC
GTCTACAAGAAAAACTTGATTTTCTTCTCCGCTGTCCTCCGAACTGAGCT
CCGTGGTGTACCAAAACATACCACAATTAACGCATCCGACGACAAGAGCT
GCGTTGTGATTTGGAATCACGTCGACAAGTGGCAGGTGCCAGAAACTTTG
GACGTCCTCGTCGCCACCTTTCGTGCTTTCGGATGGCGTGCCTTTCACGC
TGCAAGTACGATGAACCAGCTGAAGAAGGAGCATCCTGCGCAACCCCATA
TGTTCTTATCTCTGCTCGGAACACGAAAGGAAAACCAGGGAAAGGGTACG
GGTAGTGCAGTCATATCGCCTATGCTACGACAGTGTGATCGTGATGGAAC
TGCAGTCTATTTAGAATCGTCAAACAAGAACAACATTCGATTCTACGAGA
GGCATGGATTTAAAGTTCTTGGCAACATCACCGGCCTTCCTAGTGACTGC
CCGCCCATTTTTTCGTTGTGGAGAGATCCAAAGCGCCTTCAACACTAG
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protein sequence of Ggra6255.t1

>Ggra6255.t1 ID=Ggra6255.t1|Name=Ggra6255.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MAPESKSILESDSMRPNIQRQDIPRLASSLASAFEDDPFFRYMHGPKAAH
VYKKNLIFFSAVLRTELRGVPKHTTINASDDKSCVVIWNHVDKWQVPETL
DVLVATFRAFGWRAFHAASTMNQLKKEHPAQPHMFLSLLGTRKENQGKGT
GSAVISPMLRQCDRDGTAVYLESSNKNNIRFYERHGFKVLGNITGLPSDC
PPIFSLWRDPKRLQH*
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mRNA from alignment at tig00000879_pilon:333486..334133+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6255.t1 ID=Ggra6255.t1|Name=Ggra6255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000879_pilon:333486..334133+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCGAATCGAAATCCATCCTCGAGTCCGACAGCATGCGCCCCAA
CATACAGAGGCAAGATATACCCCGTCTCGCCTCGTCATTAGCCTCTGCTT
TCGAAGACGACCCATTCTTCCGGTATATGCATGGACCAAAAGCCGCTCAC
GTCTACAAGAAAAACTTGATTTTCTTCTCCGCTGTCCTCCGAACTGAGCT
CCGTGGTGTACCAAAACATACCACAATTAACGCATCCGACGACAAGAGCT
GCGTTGTGATTTGGAATCACGTCGACAAGTGGCAGGTGCCAGAAACTTTG
GACGTCCTCGTCGCCACCTTTCGTGCTTTCGGATGGCGTGCCTTTCACGC
TGCAAGTACGATGAACCAGCTGAAGAAGGAGCATCCTGCGCAACCCCATA
TGTTCTTATCTCTGCTCGGAACACGAAAGGAAAACCAGGGAAAGGGTACG
GGTAGTGCAGTCATATCGCCTATGCTACGACAGTGTGATCGTGATGGAAC
TGCAGTCTATTTAGAATCGTCAAACAAGAACAACATTCGATTCTACGAGA
GGCATGGATTTAAAGTTCTTGGCAACATCACCGGCCTTCCTAGTGACTGC
CCGCCCATTTTTTCGTTGTGGAGAGATCCAAAGCGCCTTCAACACTAG
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Coding sequence (CDS) from alignment at tig00000879_pilon:333486..334133+

>Ggra6255.t1 ID=Ggra6255.t1|Name=Ggra6255.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000879_pilon:333486..334133+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCGAATCGAAATCCATCCTCGAGTCCGACAGCATGCGCCCCAA
CATACAGAGGCAAGATATACCCCGTCTCGCCTCGTCATTAGCCTCTGCTT
TCGAAGACGACCCATTCTTCCGGTATATGCATGGACCAAAAGCCGCTCAC
GTCTACAAGAAAAACTTGATTTTCTTCTCCGCTGTCCTCCGAACTGAGCT
CCGTGGTGTACCAAAACATACCACAATTAACGCATCCGACGACAAGAGCT
GCGTTGTGATTTGGAATCACGTCGACAAGTGGCAGGTGCCAGAAACTTTG
GACGTCCTCGTCGCCACCTTTCGTGCTTTCGGATGGCGTGCCTTTCACGC
TGCAAGTACGATGAACCAGCTGAAGAAGGAGCATCCTGCGCAACCCCATA
TGTTCTTATCTCTGCTCGGAACACGAAAGGAAAACCAGGGAAAGGGTACG
GGTAGTGCAGTCATATCGCCTATGCTACGACAGTGTGATCGTGATGGAAC
TGCAGTCTATTTAGAATCGTCAAACAAGAACAACATTCGATTCTACGAGA
GGCATGGATTTAAAGTTCTTGGCAACATCACCGGCCTTCCTAGTGACTGC
CCGCCCATTTTTTCGTTGTGGAGAGATCCAAAGCGCCTTCAACACTAG
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