Ggra6251.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6251.t1
Unique NameGgra6251.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length394
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:245017..246320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002504794.1
PFAMsAminotran_5
Max annot lvl3041|Chlorophyta
KEGG rclassRC00006,RC00036
KEGG koko:K00831
KEGG ReactionR04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
Evalue4.21e-102
EggNOG OGsCOG1932@1|root,KOG2790@2759|Eukaryota,37IGE@33090|Viridiplantae,34JBS@3041|Chlorophyta
EC2.6.1.52
DescriptionAminotransferase class-V
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6251Ggra6251Gracilaria gracilis GNS1m malegenetig00000879_pilon 245017..246320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6251.t1Ggra6251.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 245017..246320 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6251.t1.start1Ggra6251.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 245017..245019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6251.t1.CDS1Ggra6251.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 245017..245169 +
Ggra6251.t1.CDS2Ggra6251.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 245292..246320 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6251.t1.exon1Ggra6251.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 245017..245169 +
Ggra6251.t1.exon2Ggra6251.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 245292..246320 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6251.t1.intron1Ggra6251.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 245170..245291 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6251.t1.stop1Ggra6251.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 246318..246320 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6251.t1 ID=Ggra6251.t1|Name=Ggra6251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=394bp
MAPNSVPQQPIGRDRAIGNFSAGPACLSDWVMHTAAAEFCNKHNTGMGIM
EMSHRDAGGPVQNAISSATDKLRVMLDVPPNYRILFLQGGAHGQFAAIAL
NLLGDKTQADYVSTGYWSQRAINEASKYCSVRLAYDGAKDGFQRIPPVSE
WNISGDSAYVHICANETIHGLEYLDDPELPAGSPVLVGDFTSTLLSRRIN
VSRYGCIYASGGKNLGPAGVVAVIVREDLLNRAVRTCPSVLSYSVMANSK
PIASIYNTPPTFLIYMVDLVLKDNMNNGGIEALEKRAIARAQRIYNVIEE
SNRFYTLKCGDAAHRSRMNVPFRVGGGSVELEELFCAEGAQRGLLQLFCH
PLFPGCRITLYNGIPDSAVDALVEHMVDFQTKYVRQHQARVQA*
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spliced messenger RNA

>Ggra6251.t1 ID=Ggra6251.t1|Name=Ggra6251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00000879_pilon:245017..246320+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCCAACTCTGTGCCGCAGCAGCCCATCGGGCGTGATCGCGCCAT
CGGAAACTTCTCCGCTGGTCCGGCTTGCCTGTCCGACTGGGTGATGCACA
CCGCCGCCGCCGAGTTTTGCAACAAGCACAACACCGGCATGGGAATCATG
GAGATGAGCCATCGCGACGCAGGAGGACCCGTGCAGAACGCCATCTCGTC
CGCCACGGACAAGCTGCGTGTGATGCTGGACGTGCCGCCCAACTACCGCA
TCCTGTTCCTGCAGGGCGGCGCGCACGGCCAGTTTGCCGCCATCGCGCTC
AACCTGCTGGGCGACAAGACGCAGGCTGACTATGTGAGCACCGGCTACTG
GAGCCAGCGCGCCATCAACGAGGCGTCCAAGTACTGCAGTGTGCGTCTGG
CGTACGACGGCGCCAAGGACGGCTTTCAACGCATCCCGCCCGTGTCGGAG
TGGAACATCTCGGGAGACAGTGCGTACGTGCATATTTGTGCCAACGAGAC
CATTCATGGGCTCGAGTACCTGGACGACCCCGAATTGCCAGCCGGAAGCC
CCGTGCTGGTGGGCGACTTTACGTCCACGCTGCTGTCGAGGCGCATCAAC
GTGAGCAGGTACGGCTGCATCTACGCGTCGGGCGGCAAGAACCTGGGCCC
GGCCGGGGTGGTTGCGGTGATCGTGAGAGAGGACCTGCTGAACAGGGCGG
TGCGCACATGCCCGTCGGTGCTGTCGTACTCGGTGATGGCGAACAGCAAG
CCCATCGCGTCCATCTACAACACGCCGCCCACGTTCCTGATCTACATGGT
GGACCTGGTGCTCAAGGACAACATGAACAACGGCGGCATCGAGGCGCTGG
AGAAGCGCGCCATTGCGCGCGCGCAGCGCATCTACAACGTGATCGAGGAG
TCCAACCGCTTCTACACGCTCAAGTGCGGCGACGCGGCGCACCGCTCGCG
CATGAACGTGCCGTTCCGCGTGGGCGGCGGCTCGGTGGAGCTGGAGGAAC
TGTTCTGCGCGGAGGGCGCGCAGCGCGGGCTGCTGCAGCTGTTCTGTCAC
CCGCTGTTCCCGGGCTGCCGTATCACGCTGTACAACGGCATCCCGGACAG
CGCCGTGGACGCGCTCGTGGAGCATATGGTGGACTTTCAGACCAAGTACG
TGCGCCAGCACCAGGCGCGTGTGCAGGCGTGA
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protein sequence of Ggra6251.t1

>Ggra6251.t1 ID=Ggra6251.t1|Name=Ggra6251.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=394bp
MAPNSVPQQPIGRDRAIGNFSAGPACLSDWVMHTAAAEFCNKHNTGMGIM
EMSHRDAGGPVQNAISSATDKLRVMLDVPPNYRILFLQGGAHGQFAAIAL
NLLGDKTQADYVSTGYWSQRAINEASKYCSVRLAYDGAKDGFQRIPPVSE
WNISGDSAYVHICANETIHGLEYLDDPELPAGSPVLVGDFTSTLLSRRIN
VSRYGCIYASGGKNLGPAGVVAVIVREDLLNRAVRTCPSVLSYSVMANSK
PIASIYNTPPTFLIYMVDLVLKDNMNNGGIEALEKRAIARAQRIYNVIEE
SNRFYTLKCGDAAHRSRMNVPFRVGGGSVELEELFCAEGAQRGLLQLFCH
PLFPGCRITLYNGIPDSAVDALVEHMVDFQTKYVRQHQARVQA*
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mRNA from alignment at tig00000879_pilon:245017..246320+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6251.t1 ID=Ggra6251.t1|Name=Ggra6251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1304bp|location=Sequence derived from alignment at tig00000879_pilon:245017..246320+ (Gracilaria gracilis GNS1m male)
ATGGCCCCCAACTCTGTGCCGCAGCAGCCCATCGGGCGTGATCGCGCCAT
CGGAAACTTCTCCGCTGGTCCGGCTTGCCTGTCCGACTGGGTGATGCACA
CCGCCGCCGCCGAGTTTTGCAACAAGCACAACACCGGCATGGGAATCATG
GAGGTAAGTGTTGgcagcaccagctcgcacgcacgcacgtattcactcgc
tcactcgctcactcactcgctcacacatgctgctgttgctgttgctgttg
ctgttgTGCTGCGCTTCGCTCACAGATGAGCCATCGCGACGCAGGAGGAC
CCGTGCAGAACGCCATCTCGTCCGCCACGGACAAGCTGCGTGTGATGCTG
GACGTGCCGCCCAACTACCGCATCCTGTTCCTGCAGGGCGGCGCGCACGG
CCAGTTTGCCGCCATCGCGCTCAACCTGCTGGGCGACAAGACGCAGGCTG
ACTATGTGAGCACCGGCTACTGGAGCCAGCGCGCCATCAACGAGGCGTCC
AAGTACTGCAGTGTGCGTCTGGCGTACGACGGCGCCAAGGACGGCTTTCA
ACGCATCCCGCCCGTGTCGGAGTGGAACATCTCGGGAGACAGTGCGTACG
TGCATATTTGTGCCAACGAGACCATTCATGGGCTCGAGTACCTGGACGAC
CCCGAATTGCCAGCCGGAAGCCCCGTGCTGGTGGGCGACTTTACGTCCAC
GCTGCTGTCGAGGCGCATCAACGTGAGCAGGTACGGCTGCATCTACGCGT
CGGGCGGCAAGAACCTGGGCCCGGCCGGGGTGGTTGCGGTGATCGTGAGA
GAGGACCTGCTGAACAGGGCGGTGCGCACATGCCCGTCGGTGCTGTCGTA
CTCGGTGATGGCGAACAGCAAGCCCATCGCGTCCATCTACAACACGCCGC
CCACGTTCCTGATCTACATGGTGGACCTGGTGCTCAAGGACAACATGAAC
AACGGCGGCATCGAGGCGCTGGAGAAGCGCGCCATTGCGCGCGCGCAGCG
CATCTACAACGTGATCGAGGAGTCCAACCGCTTCTACACGCTCAAGTGCG
GCGACGCGGCGCACCGCTCGCGCATGAACGTGCCGTTCCGCGTGGGCGGC
GGCTCGGTGGAGCTGGAGGAACTGTTCTGCGCGGAGGGCGCGCAGCGCGG
GCTGCTGCAGCTGTTCTGTCACCCGCTGTTCCCGGGCTGCCGTATCACGC
TGTACAACGGCATCCCGGACAGCGCCGTGGACGCGCTCGTGGAGCATATG
GTGGACTTTCAGACCAAGTACGTGCGCCAGCACCAGGCGCGTGTGCAGGC
GTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:245017..246320+

>Ggra6251.t1 ID=Ggra6251.t1|Name=Ggra6251.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1182bp|location=Sequence derived from alignment at tig00000879_pilon:245017..246320+ (Gracilaria gracilis GNS1m male)
ATGGCCCCCAACTCTGTGCCGCAGCAGCCCATCGGGCGTGATCGCGCCAT
CGGAAACTTCTCCGCTGGTCCGGCTTGCCTGTCCGACTGGGTGATGCACA
CCGCCGCCGCCGAGTTTTGCAACAAGCACAACACCGGCATGGGAATCATG
GAGATGAGCCATCGCGACGCAGGAGGACCCGTGCAGAACGCCATCTCGTC
CGCCACGGACAAGCTGCGTGTGATGCTGGACGTGCCGCCCAACTACCGCA
TCCTGTTCCTGCAGGGCGGCGCGCACGGCCAGTTTGCCGCCATCGCGCTC
AACCTGCTGGGCGACAAGACGCAGGCTGACTATGTGAGCACCGGCTACTG
GAGCCAGCGCGCCATCAACGAGGCGTCCAAGTACTGCAGTGTGCGTCTGG
CGTACGACGGCGCCAAGGACGGCTTTCAACGCATCCCGCCCGTGTCGGAG
TGGAACATCTCGGGAGACAGTGCGTACGTGCATATTTGTGCCAACGAGAC
CATTCATGGGCTCGAGTACCTGGACGACCCCGAATTGCCAGCCGGAAGCC
CCGTGCTGGTGGGCGACTTTACGTCCACGCTGCTGTCGAGGCGCATCAAC
GTGAGCAGGTACGGCTGCATCTACGCGTCGGGCGGCAAGAACCTGGGCCC
GGCCGGGGTGGTTGCGGTGATCGTGAGAGAGGACCTGCTGAACAGGGCGG
TGCGCACATGCCCGTCGGTGCTGTCGTACTCGGTGATGGCGAACAGCAAG
CCCATCGCGTCCATCTACAACACGCCGCCCACGTTCCTGATCTACATGGT
GGACCTGGTGCTCAAGGACAACATGAACAACGGCGGCATCGAGGCGCTGG
AGAAGCGCGCCATTGCGCGCGCGCAGCGCATCTACAACGTGATCGAGGAG
TCCAACCGCTTCTACACGCTCAAGTGCGGCGACGCGGCGCACCGCTCGCG
CATGAACGTGCCGTTCCGCGTGGGCGGCGGCTCGGTGGAGCTGGAGGAAC
TGTTCTGCGCGGAGGGCGCGCAGCGCGGGCTGCTGCAGCTGTTCTGTCAC
CCGCTGTTCCCGGGCTGCCGTATCACGCTGTACAACGGCATCCCGGACAG
CGCCGTGGACGCGCTCGTGGAGCATATGGTGGACTTTCAGACCAAGTACG
TGCGCCAGCACCAGGCGCGTGTGCAGGCGTGA
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