Ggra6250.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6250.t1
Unique Name	Ggra6250.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:242694..243737 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6250	Ggra6250	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 242694..243737 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6250.t1.start1	Ggra6250.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 242694..242696 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6250.t1.CDS1	Ggra6250.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 242694..243737 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6250.t1.exon1	Ggra6250.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 242694..243737 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6250.t1.stop1	Ggra6250.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 243735..243737 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6250.t1	Ggra6250.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 242694..243737 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:242694..243737+
coding sequence from alignment at tig00000879_pilon:242694..243737+

mRNA sequence

>Ggra6250.t1 ID=Ggra6250.t1|Name=Ggra6250.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp
MVSRQLRNAFVIPSRFNPEPSHLFKANLAAYRRAFAMCSHIDEDEWLVAS
TANVSFVGGEDTELDKANCIKSSERALLRVTAAEGIREREVTVDLSQGRY
TYGVFDSGVNVRVNVSMGDEKDVQCFTPIRSSWNTKEEDWNEQNWTDVWL
TCQRQKGRIIDLFDAFISVYSEDVSENQSEPDIQFEPERLRSSLLRGVRV
EFHDDVLFDAEVVASAGLWLPPIGNTPGMYEHFGRHSYSLAHNLSVSVPS
GAVAQRTVLDAVVVVSGAIYLGVILTFAVCMRVVAACGTTRGVHAVNTVD
GLSANWASVARGTVGKDGVRLRLGRRQVADGWKETYEVVKETEMSCG*

spliced messenger RNA

>Ggra6250.t1 ID=Ggra6250.t1|Name=Ggra6250.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000879_pilon:242694..243737+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAGCCGCCAACTGCGCAACGCATTCGTGATCCCGTCGAGATTTAA
TCCGGAGCCTTCACATCTTTTCAAGGCAAACCTCGCAGCATACAGGCGAG
CATTCGCCATGTGTTCGCACATTGACGAAGATGAGTGGCTTGTAGCAAGC
ACAGCTAACGTGTCATTTGTGGGTGGTGAGGATACGGAGCTTGATAAAGC
AAATTGCATCAAAAGCAGTGAACGCGCGCTTCTCCGAGTGACGGCGGCGG
AAGGAATTAGGGAGAGAGAGGTGACTGTGGACTTGTCGCAAGGAAGGTAT
ACGTATGGGGTGTTTGACAGTGGAGTGAACGTTCGCGTCAACGTGAGCAT
GGGGGATGAGAAGGATGTGCAATGTTTCACGCCAATTAGAAGTTCGTGGA
ACACGAAGGAGGAGGACTGGAACGAACAGAACTGGACGGATGTATGGCTA
ACGTGCCAAAGACAAAAAGGGCGAATCATCGATTTGTTCGACGCGTTCAT
AAGTGTATACAGCGAAGATGTGAGCGAAAATCAGTCCGAACCAGACATAC
AGTTTGAACCGGAGCGTTTACGAAGCAGTTTACTACGAGGCGTTCGTGTG
GAATTCCATGACGACGTTTTGTTCGACGCTGAGGTTGTGGCCAGCGCAGG
CTTGTGGCTGCCGCCCATAGGCAACACACCGGGCATGTACGAACATTTCG
GAAGGCATTCGTACTCGCTCGCACACAACTTGTCGGTGAGCGTGCCATCT
GGCGCGGTGGCGCAACGCACGGTGTTGGATGCAGTGGTGGTGGTAAGCGG
CGCCATTTACCTCGGGGTGATTCTCACGTTCGCAGTGTGCATGCGGGTGG
TGGCGGCTTGCGGAACAACACGGGGGGTGCACGCGGTGAACACGGTGGAT
GGGCTGTCGGCCAACTGGGCGAGCGTTGCGCGCGGGACGGTGGGCAAGGA
CGGGGTGAGATTGAGACTGGGGCGACGGCAGGTTGCGGACGGATGGAAGG
AGACGTACGAAGTGGTGAAAGAGACAGAGATGAGCTGTGGATGA

protein sequence of Ggra6250.t1

>Ggra6250.t1 ID=Ggra6250.t1|Name=Ggra6250.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=348bp
MVSRQLRNAFVIPSRFNPEPSHLFKANLAAYRRAFAMCSHIDEDEWLVAS
TANVSFVGGEDTELDKANCIKSSERALLRVTAAEGIREREVTVDLSQGRY
TYGVFDSGVNVRVNVSMGDEKDVQCFTPIRSSWNTKEEDWNEQNWTDVWL
TCQRQKGRIIDLFDAFISVYSEDVSENQSEPDIQFEPERLRSSLLRGVRV
EFHDDVLFDAEVVASAGLWLPPIGNTPGMYEHFGRHSYSLAHNLSVSVPS
GAVAQRTVLDAVVVVSGAIYLGVILTFAVCMRVVAACGTTRGVHAVNTVD
GLSANWASVARGTVGKDGVRLRLGRRQVADGWKETYEVVKETEMSCG*

mRNA from alignment at tig00000879_pilon:242694..243737+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6250.t1 ID=Ggra6250.t1|Name=Ggra6250.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000879_pilon:242694..243737+ (Gracilaria gracilis GNS1m male)
ATGGTTAGCCGCCAACTGCGCAACGCATTCGTGATCCCGTCGAGATTTAA
TCCGGAGCCTTCACATCTTTTCAAGGCAAACCTCGCAGCATACAGGCGAG
CATTCGCCATGTGTTCGCACATTGACGAAGATGAGTGGCTTGTAGCAAGC
ACAGCTAACGTGTCATTTGTGGGTGGTGAGGATACGGAGCTTGATAAAGC
AAATTGCATCAAAAGCAGTGAACGCGCGCTTCTCCGAGTGACGGCGGCGG
AAGGAATTAGGGAGAGAGAGGTGACTGTGGACTTGTCGCAAGGAAGGTAT
ACGTATGGGGTGTTTGACAGTGGAGTGAACGTTCGCGTCAACGTGAGCAT
GGGGGATGAGAAGGATGTGCAATGTTTCACGCCAATTAGAAGTTCGTGGA
ACACGAAGGAGGAGGACTGGAACGAACAGAACTGGACGGATGTATGGCTA
ACGTGCCAAAGACAAAAAGGGCGAATCATCGATTTGTTCGACGCGTTCAT
AAGTGTATACAGCGAAGATGTGAGCGAAAATCAGTCCGAACCAGACATAC
AGTTTGAACCGGAGCGTTTACGAAGCAGTTTACTACGAGGCGTTCGTGTG
GAATTCCATGACGACGTTTTGTTCGACGCTGAGGTTGTGGCCAGCGCAGG
CTTGTGGCTGCCGCCCATAGGCAACACACCGGGCATGTACGAACATTTCG
GAAGGCATTCGTACTCGCTCGCACACAACTTGTCGGTGAGCGTGCCATCT
GGCGCGGTGGCGCAACGCACGGTGTTGGATGCAGTGGTGGTGGTAAGCGG
CGCCATTTACCTCGGGGTGATTCTCACGTTCGCAGTGTGCATGCGGGTGG
TGGCGGCTTGCGGAACAACACGGGGGGTGCACGCGGTGAACACGGTGGAT
GGGCTGTCGGCCAACTGGGCGAGCGTTGCGCGCGGGACGGTGGGCAAGGA
CGGGGTGAGATTGAGACTGGGGCGACGGCAGGTTGCGGACGGATGGAAGG
AGACGTACGAAGTGGTGAAAGAGACAGAGATGAGCTGTGGATGA

Coding sequence (CDS) from alignment at tig00000879_pilon:242694..243737+

>Ggra6250.t1 ID=Ggra6250.t1|Name=Ggra6250.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00000879_pilon:242694..243737+ (Gracilaria gracilis GNS1m male)
ATGGTTAGCCGCCAACTGCGCAACGCATTCGTGATCCCGTCGAGATTTAA
TCCGGAGCCTTCACATCTTTTCAAGGCAAACCTCGCAGCATACAGGCGAG
CATTCGCCATGTGTTCGCACATTGACGAAGATGAGTGGCTTGTAGCAAGC
ACAGCTAACGTGTCATTTGTGGGTGGTGAGGATACGGAGCTTGATAAAGC
AAATTGCATCAAAAGCAGTGAACGCGCGCTTCTCCGAGTGACGGCGGCGG
AAGGAATTAGGGAGAGAGAGGTGACTGTGGACTTGTCGCAAGGAAGGTAT
ACGTATGGGGTGTTTGACAGTGGAGTGAACGTTCGCGTCAACGTGAGCAT
GGGGGATGAGAAGGATGTGCAATGTTTCACGCCAATTAGAAGTTCGTGGA
ACACGAAGGAGGAGGACTGGAACGAACAGAACTGGACGGATGTATGGCTA
ACGTGCCAAAGACAAAAAGGGCGAATCATCGATTTGTTCGACGCGTTCAT
AAGTGTATACAGCGAAGATGTGAGCGAAAATCAGTCCGAACCAGACATAC
AGTTTGAACCGGAGCGTTTACGAAGCAGTTTACTACGAGGCGTTCGTGTG
GAATTCCATGACGACGTTTTGTTCGACGCTGAGGTTGTGGCCAGCGCAGG
CTTGTGGCTGCCGCCCATAGGCAACACACCGGGCATGTACGAACATTTCG
GAAGGCATTCGTACTCGCTCGCACACAACTTGTCGGTGAGCGTGCCATCT
GGCGCGGTGGCGCAACGCACGGTGTTGGATGCAGTGGTGGTGGTAAGCGG
CGCCATTTACCTCGGGGTGATTCTCACGTTCGCAGTGTGCATGCGGGTGG
TGGCGGCTTGCGGAACAACACGGGGGGTGCACGCGGTGAACACGGTGGAT
GGGCTGTCGGCCAACTGGGCGAGCGTTGCGCGCGGGACGGTGGGCAAGGA
CGGGGTGAGATTGAGACTGGGGCGACGGCAGGTTGCGGACGGATGGAAGG
AGACGTACGAAGTGGTGAAAGAGACAGAGATGAGCTGTGGATGA