Ggra625.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra625.t1
Unique NameGgra625.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:134770..135402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004988666.1
Max annot lvl2759|Eukaryota
Evalue7.47e-06
EggNOG OGs2CZZG@1|root,2SC84@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra625Ggra625Gracilaria gracilis GNS1m malegenetig00000895_pilon 134770..135402 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra625.t1.stop1Ggra625.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 134770..134772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra625.t1.CDS1Ggra625.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 134770..135402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra625.t1.exon1Ggra625.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 134770..135402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra625.t1.start1Ggra625.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 135400..135402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra625.t1Ggra625.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 134770..135402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra625.t1 ID=Ggra625.t1|Name=Ggra625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MFRIPKQRMYSNYLHLNLHFNASRTPKEPLYAFLHRSEFWSQHAKLLLGR
SYRDQRLLTERDALRAVALVADHIAFVGLTEQFELSCRLFHALFGGVPHR
LQFENVRPSLQRYKRHRLRNESFRYDEAQFRDWVDSADEMVYAAAQLRFW
NDVARLKSEIEKDGLGEVHVLPPEQRYQTHVLRGAPGTDRRVSVYNAASS
KMARTSPATL*
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spliced messenger RNA

>Ggra625.t1 ID=Ggra625.t1|Name=Ggra625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000895_pilon:134770..135402- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCATCCCCAAGCAGCGCATGTACTCCAATTACCTGCACCTCAA
CCTTCACTTCAACGCGTCGCGCACGCCCAAGGAGCCGCTGTACGCCTTTC
TGCACCGCTCCGAGTTCTGGTCGCAGCACGCAAAGCTGCTGCTGGGGCGC
TCGTACCGCGACCAGCGCCTGCTGACGGAGCGCGACGCGCTGCGCGCCGT
GGCGCTGGTGGCGGACCACATTGCGTTTGTGGGGCTCACCGAGCAGTTTG
AGCTGTCGTGCCGGCTGTTTCACGCGCTGTTTGGCGGCGTGCCGCACCGG
CTGCAGTTTGAAAACGTGCGCCCGAGCCTGCAGCGCTACAAGCGCCATCG
GCTGCGCAACGAGAGCTTTCGCTATGACGAGGCGCAGTTCCGCGACTGGG
TGGACTCGGCCGACGAGATGGTGTACGCCGCCGCGCAGCTGCGCTTCTGG
AACGACGTGGCGCGCCTCAAGTCCGAAATCGAGAAGGACGGGCTCGGTGA
GGTGCACGTGCTGCCGCCGGAGCAGCGCTACCAGACGCACGTGCTACGCG
GCGCGCCGGGCACAGATAGACGCGTTAGTGTGTACAACGCTGCCAGTAGT
AAGATGGCGCGCACCAGCCCGGCAACGTTATAA
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protein sequence of Ggra625.t1

>Ggra625.t1 ID=Ggra625.t1|Name=Ggra625.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MFRIPKQRMYSNYLHLNLHFNASRTPKEPLYAFLHRSEFWSQHAKLLLGR
SYRDQRLLTERDALRAVALVADHIAFVGLTEQFELSCRLFHALFGGVPHR
LQFENVRPSLQRYKRHRLRNESFRYDEAQFRDWVDSADEMVYAAAQLRFW
NDVARLKSEIEKDGLGEVHVLPPEQRYQTHVLRGAPGTDRRVSVYNAASS
KMARTSPATL*
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mRNA from alignment at tig00000895_pilon:134770..135402-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra625.t1 ID=Ggra625.t1|Name=Ggra625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000895_pilon:134770..135402- (Gracilaria gracilis GNS1m male)
ATGTTCCGCATCCCCAAGCAGCGCATGTACTCCAATTACCTGCACCTCAA
CCTTCACTTCAACGCGTCGCGCACGCCCAAGGAGCCGCTGTACGCCTTTC
TGCACCGCTCCGAGTTCTGGTCGCAGCACGCAAAGCTGCTGCTGGGGCGC
TCGTACCGCGACCAGCGCCTGCTGACGGAGCGCGACGCGCTGCGCGCCGT
GGCGCTGGTGGCGGACCACATTGCGTTTGTGGGGCTCACCGAGCAGTTTG
AGCTGTCGTGCCGGCTGTTTCACGCGCTGTTTGGCGGCGTGCCGCACCGG
CTGCAGTTTGAAAACGTGCGCCCGAGCCTGCAGCGCTACAAGCGCCATCG
GCTGCGCAACGAGAGCTTTCGCTATGACGAGGCGCAGTTCCGCGACTGGG
TGGACTCGGCCGACGAGATGGTGTACGCCGCCGCGCAGCTGCGCTTCTGG
AACGACGTGGCGCGCCTCAAGTCCGAAATCGAGAAGGACGGGCTCGGTGA
GGTGCACGTGCTGCCGCCGGAGCAGCGCTACCAGACGCACGTGCTACGCG
GCGCGCCGGGCACAGATAGACGCGTTAGTGTGTACAACGCTGCCAGTAGT
AAGATGGCGCGCACCAGCCCGGCAACGTTATAA
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Coding sequence (CDS) from alignment at tig00000895_pilon:134770..135402-

>Ggra625.t1 ID=Ggra625.t1|Name=Ggra625.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000895_pilon:134770..135402- (Gracilaria gracilis GNS1m male)
ATGTTCCGCATCCCCAAGCAGCGCATGTACTCCAATTACCTGCACCTCAA
CCTTCACTTCAACGCGTCGCGCACGCCCAAGGAGCCGCTGTACGCCTTTC
TGCACCGCTCCGAGTTCTGGTCGCAGCACGCAAAGCTGCTGCTGGGGCGC
TCGTACCGCGACCAGCGCCTGCTGACGGAGCGCGACGCGCTGCGCGCCGT
GGCGCTGGTGGCGGACCACATTGCGTTTGTGGGGCTCACCGAGCAGTTTG
AGCTGTCGTGCCGGCTGTTTCACGCGCTGTTTGGCGGCGTGCCGCACCGG
CTGCAGTTTGAAAACGTGCGCCCGAGCCTGCAGCGCTACAAGCGCCATCG
GCTGCGCAACGAGAGCTTTCGCTATGACGAGGCGCAGTTCCGCGACTGGG
TGGACTCGGCCGACGAGATGGTGTACGCCGCCGCGCAGCTGCGCTTCTGG
AACGACGTGGCGCGCCTCAAGTCCGAAATCGAGAAGGACGGGCTCGGTGA
GGTGCACGTGCTGCCGCCGGAGCAGCGCTACCAGACGCACGTGCTACGCG
GCGCGCCGGGCACAGATAGACGCGTTAGTGTGTACAACGCTGCCAGTAGT
AAGATGGCGCGCACCAGCCCGGCAACGTTATAA
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