Ggra6247.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6247.t1
Unique NameGgra6247.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:223663..224522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6247Ggra6247Gracilaria gracilis GNS1m malegenetig00000879_pilon 223663..224522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6247.t1Ggra6247.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 223663..224522 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6247.t1.start1Ggra6247.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 223663..223665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6247.t1.CDS1Ggra6247.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 223663..224371 +
Ggra6247.t1.CDS2Ggra6247.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 224488..224522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6247.t1.exon1Ggra6247.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 223663..224371 +
Ggra6247.t1.exon2Ggra6247.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 224488..224522 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6247.t1.intron1Ggra6247.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 224372..224487 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6247.t1.stop1Ggra6247.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 224520..224522 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6247.t1 ID=Ggra6247.t1|Name=Ggra6247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MTKSVTQDVNNLLVDPTIFTHSPAEIVKVIQEALDGQVTKDYYSLNTQAS
NLRHTGTISDYINQHTAIRRKQIIAQAPGIADERVTVNFILQGLVDDDRF
ANRAITLMLDTPPMTIKDAQHRLEQYESLTTQQASNATVQMSINASYPRS
QTCNIPYRRGRGRARYGGASNHSLRNAIADLTKKIDGLQTAKPRRGRGGS
AAKQASSSHDAIASEIIEAMQALEHATTDDTPDVQQQEEEGNTEPNQ*
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spliced messenger RNA

>Ggra6247.t1 ID=Ggra6247.t1|Name=Ggra6247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000879_pilon:223663..224522+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAAAGTGTCACACAAGATGTCAACAATTTGCTTGTAGACCCCAC
GATCTTTACCCACTCCCCGGCAGAAATAGTCAAAGTTATTCAGGAAGCAC
TCGATGGACAAGTCACGAAGGACTATTACAGTCTTAACACCCAAGCGAGC
AACCTCCGCCATACAGGCACAATCTCAGACTATATAAATCAGCACACTGC
TATCCGTCGGAAGCAGATCATCGCGCAAGCGCCAGGTATTGCAGATGAAC
GCGTCACCGTCAACTTCATTTTACAAGGTTTGGTAGACGACGACCGGTTC
GCGAACCGCGCCATCACTCTGATGTTGGATACCCCTCCAATGACAATCAA
AGACGCACAGCATCGCCTCGAACAGTATGAAAGCCTCACTACCCAACAGG
CGTCGAATGCAACCGTCCAGATGTCAATCAACGCTTCTTACCCTCGCAGC
CAAACCTGCAACATACCCTACCGACGCGGTCGTGGTCGAGCCCGCTACGG
TGGCGCCAGCAACCACAGTCTACGGAATGCCATCGCAGATCTTACCAAGA
AAATCGATGGTTTGCAAACTGCAAAACCTAGACGTGGTCGCGGTGGCTCT
GCCGCGAAACAAGCCTCTTCCAGCCATGATGCCATAGCGTCCGAAATCAT
CGAGGCCATGCAAGCCCTGGAGCATGCCACGACTGATGACACACCGGATG
TTCAGCAACAAGAAGAGGAGGGAAACACTGAACCTAATCAGTAA
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protein sequence of Ggra6247.t1

>Ggra6247.t1 ID=Ggra6247.t1|Name=Ggra6247.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MTKSVTQDVNNLLVDPTIFTHSPAEIVKVIQEALDGQVTKDYYSLNTQAS
NLRHTGTISDYINQHTAIRRKQIIAQAPGIADERVTVNFILQGLVDDDRF
ANRAITLMLDTPPMTIKDAQHRLEQYESLTTQQASNATVQMSINASYPRS
QTCNIPYRRGRGRARYGGASNHSLRNAIADLTKKIDGLQTAKPRRGRGGS
AAKQASSSHDAIASEIIEAMQALEHATTDDTPDVQQQEEEGNTEPNQ*
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mRNA from alignment at tig00000879_pilon:223663..224522+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6247.t1 ID=Ggra6247.t1|Name=Ggra6247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=860bp|location=Sequence derived from alignment at tig00000879_pilon:223663..224522+ (Gracilaria gracilis GNS1m male)
ATGACAAAAAGTGTCACACAAGATGTCAACAATTTGCTTGTAGACCCCAC
GATCTTTACCCACTCCCCGGCAGAAATAGTCAAAGTTATTCAGGAAGCAC
TCGATGGACAAGTCACGAAGGACTATTACAGTCTTAACACCCAAGCGAGC
AACCTCCGCCATACAGGCACAATCTCAGACTATATAAATCAGCACACTGC
TATCCGTCGGAAGCAGATCATCGCGCAAGCGCCAGGTATTGCAGATGAAC
GCGTCACCGTCAACTTCATTTTACAAGGTTTGGTAGACGACGACCGGTTC
GCGAACCGCGCCATCACTCTGATGTTGGATACCCCTCCAATGACAATCAA
AGACGCACAGCATCGCCTCGAACAGTATGAAAGCCTCACTACCCAACAGG
CGTCGAATGCAACCGTCCAGATGTCAATCAACGCTTCTTACCCTCGCAGC
CAAACCTGCAACATACCCTACCGACGCGGTCGTGGTCGAGCCCGCTACGG
TGGCGCCAGCAACCACAGTCTACGGAATGCCATCGCAGATCTTACCAAGA
AAATCGATGGTTTGCAAACTGCAAAACCTAGACGTGGTCGCGGTGGCTCT
GCCGCGAAACAAGCCTCTTCCAGCCATGATGCCATAGCGTCCGAAATCAT
CGAGGCCATGCAAGCCCTGGAGCATGCCACGACTGATGACACACCGGATG
TTCAGCAACGTACGTACACACTGGATTCCGCAGCCCACCATACTATCATA
TCACATGATACCAACGACGCCACTAACCTACGCTGTCCGATCCGAACTCA
TACGGCCTCTCCGCACCCGCTACAGAAGAAGAGGAGGGAAACACTGAACC
TAATCAGTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:223663..224522+

>Ggra6247.t1 ID=Ggra6247.t1|Name=Ggra6247.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000879_pilon:223663..224522+ (Gracilaria gracilis GNS1m male)
ATGACAAAAAGTGTCACACAAGATGTCAACAATTTGCTTGTAGACCCCAC
GATCTTTACCCACTCCCCGGCAGAAATAGTCAAAGTTATTCAGGAAGCAC
TCGATGGACAAGTCACGAAGGACTATTACAGTCTTAACACCCAAGCGAGC
AACCTCCGCCATACAGGCACAATCTCAGACTATATAAATCAGCACACTGC
TATCCGTCGGAAGCAGATCATCGCGCAAGCGCCAGGTATTGCAGATGAAC
GCGTCACCGTCAACTTCATTTTACAAGGTTTGGTAGACGACGACCGGTTC
GCGAACCGCGCCATCACTCTGATGTTGGATACCCCTCCAATGACAATCAA
AGACGCACAGCATCGCCTCGAACAGTATGAAAGCCTCACTACCCAACAGG
CGTCGAATGCAACCGTCCAGATGTCAATCAACGCTTCTTACCCTCGCAGC
CAAACCTGCAACATACCCTACCGACGCGGTCGTGGTCGAGCCCGCTACGG
TGGCGCCAGCAACCACAGTCTACGGAATGCCATCGCAGATCTTACCAAGA
AAATCGATGGTTTGCAAACTGCAAAACCTAGACGTGGTCGCGGTGGCTCT
GCCGCGAAACAAGCCTCTTCCAGCCATGATGCCATAGCGTCCGAAATCAT
CGAGGCCATGCAAGCCCTGGAGCATGCCACGACTGATGACACACCGGATG
TTCAGCAACAAGAAGAGGAGGGAAACACTGAACCTAATCAGTAA
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