Ggra6240.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6240.t1
Unique NameGgra6240.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:123412..125891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707300.1
Preferred namePRK
PFAMsPRK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00855
KEGG ReactionR01523
KEGG Pathwayko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG ModuleM00165,M00166
GOsGO:0003674,GO:0003824,GO:0004849,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008655,GO:0008974,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010319,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034404,GO:0034641,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043174,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046983,GO:0048046,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097718,GO:0098542,GO:0099080,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue9.47e-35
EggNOG OGsCOG0572@1|root,KOG4203@2759|Eukaryota
EC2.7.1.19
DescriptionUMP salvage
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6240Ggra6240Gracilaria gracilis GNS1m malegenetig00000879_pilon 123412..125891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6240.t1Ggra6240.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 123412..125891 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6240.t1.stop1Ggra6240.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 123412..123414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6240.t1.CDS1Ggra6240.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 123412..123761 -
Ggra6240.t1.CDS2Ggra6240.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 125746..125767 -
Ggra6240.t1.CDS3Ggra6240.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000879_pilon 125874..125891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6240.t1.exon1Ggra6240.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 123412..123761 -
Ggra6240.t1.exon2Ggra6240.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 125746..125767 -
Ggra6240.t1.exon3Ggra6240.t1.exon3Gracilaria gracilis GNS1m maleexontig00000879_pilon 125874..125891 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6240.t1.intron1Ggra6240.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 123762..125745 -
Ggra6240.t1.intron2Ggra6240.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000879_pilon 125768..125873 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6240.t1.start1Ggra6240.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 125889..125891 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6240.t1 ID=Ggra6240.t1|Name=Ggra6240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=130bp
MKDPVEVFKAFTCANMRLGIQAFSFCVRKLTCSSPGIKFHCGPGTYCDQP
VSVFEVDGGFEKLEEIVYVEMHIERSGTKFFGEITPSLLPNPNAPGSTNG
TGLVQVLMAMMMRNVYEKITDRSVSVSSS*
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spliced messenger RNA

>Ggra6240.t1 ID=Ggra6240.t1|Name=Ggra6240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=390bp|location=Sequence derived from alignment at tig00000879_pilon:123412..125891- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGACCCTGTTGAGGTCTTCAAAGCGTTTACTTGCGCGAACATGCG
CTTGGGCATTCAGGCGTTCTCGTTTTGTGTAAGAAAGTTGACCTGCTCAT
CTCCCGGTATCAAGTTCCATTGCGGACCGGGTACGTACTGCGACCAACCA
GTATCGGTGTTTGAGGTGGACGGTGGCTTTGAAAAGCTGGAGGAGATAGT
ATACGTTGAAATGCATATTGAACGTTCCGGAACCAAGTTCTTTGGTGAGA
TCACGCCGTCTCTGCTGCCTAACCCCAACGCACCGGGCTCCACGAACGGC
ACTGGACTTGTGCAGGTTTTGATGGCTATGATGATGCGTAACGTGTACGA
GAAGATCACTGACAGGTCTGTTTCTGTTTCGAGCAGCTGA
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protein sequence of Ggra6240.t1

>Ggra6240.t1 ID=Ggra6240.t1|Name=Ggra6240.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=130bp
MKDPVEVFKAFTCANMRLGIQAFSFCVRKLTCSSPGIKFHCGPGTYCDQP
VSVFEVDGGFEKLEEIVYVEMHIERSGTKFFGEITPSLLPNPNAPGSTNG
TGLVQVLMAMMMRNVYEKITDRSVSVSSS*
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mRNA from alignment at tig00000879_pilon:123412..125891-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6240.t1 ID=Ggra6240.t1|Name=Ggra6240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2480bp|location=Sequence derived from alignment at tig00000879_pilon:123412..125891- (Gracilaria gracilis GNS1m male)
ATGAAAGACCCTGTTGAGGTAACTGTGTCGAGTTCTGAGGTCGTAATCAA
TTTAATTGCGCAGCATTGCAATTTTCGGCGCCAAGATATGCTGACTTATG
ATTCTGTGATGGCTCTTCGCCAAGGTCTTCAAAGCGTTTACTTGCGGTAT
GGTCATTGCTCATCGTGGAATCCAAAGGCCGCCCCGGGTTCGCTTGGTAA
TCCTCTGATAAACAACGAAGACCTTTCCAACTTTCGGAGAGCATATCGCG
TCATTCTAAGTAGACGAGGTGAGATTAAAATGCGTACTCGCCCAATTACT
ATTCATCTGGTTTGCGATCTTGCCGAACGGTTTTGGTTTGGACACTGTAA
TATCGTCAGCCCATTAGATGTTCTACTGCATGCGATCATTGTGGTTGGGC
TTAATTTGGGACTTCGTTACGATGAAGTGACCAAGCTGTCTTACAGACAT
GTCTCGACTACAAGCAACTGCATTTCTCTAACGATTCCTGTCGCGACGAA
AAATTCTACGACGGAAAGAACTTATAATCTTCGCGAGTGGTGCGGAAGCA
TTTCGCTTCGATATTCTGTGATTATGGACCCTTTCGTTGCGCTTCTTGTG
TGGCTTTGCTTGCGTGGACCCTTTGACGGCTTCTTGTTTTGCAACTTGAA
GAAGACAAATGCTGGTTTTATTTTGCAGCATCAGTGTGCTTTTTCTGTGG
CACGTTTCACAGATCTACTTCGAAATCGTCTAAGCACAATAGGGGTGGGA
GATGGCGACGTTTTCGCATACTCAGGACACTCGATAAAGCGCGGGGCGGT
GCAGTTATACCGCTCATTGGGATATAAAGATGAGTTCATTATGGAACTGG
TCAAATCGTCTGATTTCGCATCGTATTCAAACTATTGTGAGGTGTATAAC
GATTGTCAAACTAACCTCCCCCGCTTTAACGGTGTTGAAGCCTTCCTTAT
CATGCGATAGCCATAACCGACGAACAGATAGATGAGACCGACGATGCGCA
CATGCGCAACATATATAAATGACGTCTTCTTCAAAAAGATAAGATACCAG
CAGTACATATATGACGAATACATTGAGGTTTGTGCGGAACGTTCTGGCTC
CCTGGCATTGACATACAAAGTTGCTCCAATCGTTTCTATGACAGCTGCTG
ATAGTTGAACAAACGATGGAAATGCCTACGTGATGCTTTGTGATGTGGAG
GCCACTTTCCTTGCCGAAGTATCCGCGAACAATGGCAGTTTTTTATACCT
CTGGGGTCTGTCCAGTCTTGAGGGTAACGTTGTTTCTCTCGGGAACTCAT
CAGTCAACGAACAGATAGTTACGGTTTTGCCCAACATGATGAGGCCGAGC
GGAACTACTTACATCAATTATGGGCTGAGCGTCCTGGTGAAAATGTAGTG
ATGTGGAATACTTGAAGTTGAAGTACAAACCGCCTTGTCTGTTGAATGAA
ATGGTGCGACCAACAGGACTGAAGTATTTGGCTAATCCATCTTTGCGCAC
AGAATAAACTTCTGCTTAGTTGAACAAAACGTTTGGAAAAGCCCTTATCG
CGTCCATATTCTCTCGAAGGAATTGCTCAGATGCAGAATGACCCCGGTTT
CGAAACCTCGTTAGAGAACCTGAAGGATGCAAAAGAGATTTTGGAGGGTG
TGGATTATCCTAAAAGAGTGATCTCCAAGCCGAAGAACGAGAAGTTTTCA
AGAGCAGCGTCGGGGTCAATACGTGACATCATAAATCCCATCACTTGGAA
ACCCATGACGAAACCAACCTCCCTACGTCCGTACGAAACGAAAAATCCAT
TGTTGAAGCGCGGAAGCATTTTTGGGCGTGTCTTCAGCTTTATACGCAAT
CCTGTTAGAGGACCGAGTCAATTGATACCACGAACAATTCAGCAACCTTT
TAGTAGTAGTGTTGAATGAGATGGACCTGTGTCTTCAGAACAAGATGCAT
CAGCACACCCCAGTACAGAATGATTGCTTGAAAACTCAACACATAGAACG
CGGAACGTTTCAAGAGCTGGCTTCCAATCACCAGAAACCATAATGATGTC
AATTCCTGCCGAATGAGATCGGCATGGAGATGGATGTGAAATGGTTCCTG
CTCAAAATCTCGTACCTTTCAATGCTGCAGCGAACATGCGCTTGGGCATT
CAGGCGTTCTCGTTTTGTGTAAGAAAGTTGACCTGCTCATCTCCCGGTAT
CAAGTTCCATTGCGGACCGGGTACGTACTGCGACCAACCAGTATCGGTGT
TTGAGGTGGACGGTGGCTTTGAAAAGCTGGAGGAGATAGTATACGTTGAA
ATGCATATTGAACGTTCCGGAACCAAGTTCTTTGGTGAGATCACGCCGTC
TCTGCTGCCTAACCCCAACGCACCGGGCTCCACGAACGGCACTGGACTTG
TGCAGGTTTTGATGGCTATGATGATGCGTAACGTGTACGAGAAGATCACT
GACAGGTCTGTTTCTGTTTCGAGCAGCTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:123412..125891-

>Ggra6240.t1 ID=Ggra6240.t1|Name=Ggra6240.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=390bp|location=Sequence derived from alignment at tig00000879_pilon:123412..125891- (Gracilaria gracilis GNS1m male)
ATGAAAGACCCTGTTGAGGTCTTCAAAGCGTTTACTTGCGCGAACATGCG
CTTGGGCATTCAGGCGTTCTCGTTTTGTGTAAGAAAGTTGACCTGCTCAT
CTCCCGGTATCAAGTTCCATTGCGGACCGGGTACGTACTGCGACCAACCA
GTATCGGTGTTTGAGGTGGACGGTGGCTTTGAAAAGCTGGAGGAGATAGT
ATACGTTGAAATGCATATTGAACGTTCCGGAACCAAGTTCTTTGGTGAGA
TCACGCCGTCTCTGCTGCCTAACCCCAACGCACCGGGCTCCACGAACGGC
ACTGGACTTGTGCAGGTTTTGATGGCTATGATGATGCGTAACGTGTACGA
GAAGATCACTGACAGGTCTGTTTCTGTTTCGAGCAGCTGA
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