Ggra624.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra624.t1
Unique NameGgra624.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length594
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:132863..134644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_03376T0
PFAMsC2,Copine,zf-C3HC4_3,zf-MYND
Max annot lvl2759|Eukaryota
KEGG koko:K16280
Evalue8.82e-80
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
EC2.3.2.27
Descriptionnegative regulation of response to water deprivation
COG categoryU
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra624Ggra624Gracilaria gracilis GNS1m malegenetig00000895_pilon 132863..134644 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra624.t1.start1Ggra624.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 132863..132865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra624.t1.CDS1Ggra624.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 132863..134644 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra624.t1.exon1Ggra624.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 132863..134644 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra624.t1.stop1Ggra624.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 134642..134644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra624.t1Ggra624.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 132863..134644 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra624.t1 ID=Ggra624.t1|Name=Ggra624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp
MSVDTCESRLSIHLSCADVRNMDFIGRSDPFALLYLDPTGAVVSPRAHSA
AASPSDAAAAAAAAAAVGGAASPTRARSARAVGGGGAGGPPVRDARWQRV
GCTETVYNSLSVTWATSFEIAYFFERAQKLAVDVYDRDDASEKDADLHRH
DYLGSVELSVPSLVRAPGQRKTLPLRIAQRPHHRCGSLTVIAENVSHSKL
RIAFNPRLSSFAPPSRALSFARARGPFLTVSRAAADGDDVNARSAQRIIV
WRSQAPAVHTAPRAFAFEQLSHNYEKFCRRDEELPLLFQLSYHSGGRERV
VADATQSLKECARNDWRIALRMLRTRCLSPPRNRAPALHLENRTMTEDRT
FLDYIIGGCDMSLVVAIDFTASNGDPSQRGTLHFFDSMEPNEYELAIRAV
GDILAAYSSDQRFPAYGFGAKLPPDFHQPCHKFSLTGSADPTCHTVDDVL
NMYRQTLYNVRLSGPTHFSEVIRAAAEHANVDVTQSAQSYCTLLIVTDGV
ISDMQSTLREISLASRLPMSIVIIGVGDADFTDMRELDGDEREQDRDIVQ
FVVFRQYRDTPEVLRAMVLEEIPGQLVQYMTQRNIIPNAPPAD*
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spliced messenger RNA

>Ggra624.t1 ID=Ggra624.t1|Name=Ggra624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00000895_pilon:132863..134644+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTGGATACGTGCGAGTCGCGCCTCAGCATCCATCTGTCGTGCGC
CGACGTGCGCAACATGGACTTTATCGGCCGCTCCGACCCGTTCGCGCTGC
TGTATCTGGACCCCACCGGCGCCGTCGTGTCGCCGCGCGCGCACAGCGCC
GCCGCCTCGCCGTCAGAcgccgccgccgccgccgccgccgccgccgccgT
CGGCGGTGCTGCGTCTCCCAcgcgcgcgcgctccgcgcgcgcggtgggcg
gcggcggcgcgggcggaccgcccgtgcgcgacgcgcgctggcagcgcgTC
GGCTGCACGGAGACGGTGTACAACTCGCTGTCCGTGACGTGGGCCACCAG
CTTTGAGATAGCGTACTTTTTCGAGCGCGCGCAAAAGCTGGCGGTGGACG
TGTACGACCGCGACGACGCGTCGGAGAAGGACGCCGACCTGCACCGCCAC
GACTACCTGGGCAGCGTGGAGCTGTCCGTGCCGTCGCTGGTGCGCGCGCC
GGGGCAGCGAAAGACGCTGCCGCTGCGCATCGCGCAGCGCCCGCACCACC
GCTGCGGCTCGCTCACCGTGATCGCGGAGAACGTGTCGCACAGCAAGCTG
CGCATCGCGTTCAACCCGCGCCTGTCGTCGTTTGCGCCGCCGTCGCGCGC
GCTGTCGTTTGCGCGCGCGCGCGGGCCGTTTCTCACCGTGTCGCGCGCCG
CGGCGGACGGCGACGACGTCAACGCGCGCAGCGCGCAGCGTATCATCGTG
TGGCGCTCGCAGGCGCCCGCCGTGCACACGGCGCCGCGCGCGTTTGCGTT
CGAGCAGCTGTCGCACAACTACGAAAAGTTTTGTCGGCGCGACGAGGAGC
TGCCGCTGCTGTTCCAGCTGTCGTACCACAGCGGCGGGCGAGAGCGCGTG
GTGGCCGACGCCACCCAGTCGCTCAAGGAGTGCGCGCGCAACGACTGGCG
CATCGCGCTCCGCATGCTACGCACGCGCTGTCTGTCGCCGCCGCGCAACC
GCGCGCCCGCGCTGCACCTGGAGAACCGCACCATGACGGAGGACCGCACC
TTTCTGGACTACATCATCGGCGGCTGCGACATGTCGCTGGTGGTGGCCAT
CGACTTTACGGCCAGCAACGGCGACCCTTCGCAGCGCGGCACGCTGCACT
TTTTCGACTCCATGGAGCCCAACGAGTACGAGCTGGCCATTCGCGCCGTG
GGCGACATTCTGGCGGCGTACAGCTCGGACCAACGGTTCCCGGCGTACGG
CTTTGGCGCCAAGCTGCCACCCGACTTTCACCAGCCGTGCCACAAGTTCT
CGCTCACGGGCAGCGCGGACCCCACCTGCCACACCGTGGACGACGTGCTC
AACATGTACCGGCAGACGCTGTACAACGTGCGGCTGTCGGGGCCGACGCA
CTTTTCGGAGGTGATTCGCGCCGCCGCCGAGCACGCCAACGTCGACGTGA
CGCAGAGCGCGCAGTCGTACTGCACGCTGCTCATCGTCACGGACGGCGTC
ATCAGCGACATGCAGAGCACGCTGCGCGAGATCTCGCTCGCCAGTCGACT
GCCCATGTCCATTGTGATCATCGGCGTGGGCGACGCCGACTTTACCGACA
TGCGCGAGCTGGACGGCGATGAACGCGAGCAGGACCGCGACATTGTGCAG
TTTGTGGTGTTTCGACAGTACCGCGATACGCCCGAGGTGCTGCGCGCCAT
GGTGCTGGAGGAGATCCCGGGGCAACTTGTGCAGTACATGACACAACGGA
ACATCATCCCCAACGCGCCGCCCGCCGATTAG
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protein sequence of Ggra624.t1

>Ggra624.t1 ID=Ggra624.t1|Name=Ggra624.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=594bp
MSVDTCESRLSIHLSCADVRNMDFIGRSDPFALLYLDPTGAVVSPRAHSA
AASPSDAAAAAAAAAAVGGAASPTRARSARAVGGGGAGGPPVRDARWQRV
GCTETVYNSLSVTWATSFEIAYFFERAQKLAVDVYDRDDASEKDADLHRH
DYLGSVELSVPSLVRAPGQRKTLPLRIAQRPHHRCGSLTVIAENVSHSKL
RIAFNPRLSSFAPPSRALSFARARGPFLTVSRAAADGDDVNARSAQRIIV
WRSQAPAVHTAPRAFAFEQLSHNYEKFCRRDEELPLLFQLSYHSGGRERV
VADATQSLKECARNDWRIALRMLRTRCLSPPRNRAPALHLENRTMTEDRT
FLDYIIGGCDMSLVVAIDFTASNGDPSQRGTLHFFDSMEPNEYELAIRAV
GDILAAYSSDQRFPAYGFGAKLPPDFHQPCHKFSLTGSADPTCHTVDDVL
NMYRQTLYNVRLSGPTHFSEVIRAAAEHANVDVTQSAQSYCTLLIVTDGV
ISDMQSTLREISLASRLPMSIVIIGVGDADFTDMRELDGDEREQDRDIVQ
FVVFRQYRDTPEVLRAMVLEEIPGQLVQYMTQRNIIPNAPPAD*
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mRNA from alignment at tig00000895_pilon:132863..134644+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra624.t1 ID=Ggra624.t1|Name=Ggra624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00000895_pilon:132863..134644+ (Gracilaria gracilis GNS1m male)
ATGTCGGTGGATACGTGCGAGTCGCGCCTCAGCATCCATCTGTCGTGCGC
CGACGTGCGCAACATGGACTTTATCGGCCGCTCCGACCCGTTCGCGCTGC
TGTATCTGGACCCCACCGGCGCCGTCGTGTCGCCGCGCGCGCACAGCGCC
GCCGCCTCGCCGTCAGAcgccgccgccgccgccgccgccgccgccgccgT
CGGCGGTGCTGCGTCTCCCAcgcgcgcgcgctccgcgcgcgcggtgggcg
gcggcggcgcgggcggaccgcccgtgcgcgacgcgcgctggcagcgcgTC
GGCTGCACGGAGACGGTGTACAACTCGCTGTCCGTGACGTGGGCCACCAG
CTTTGAGATAGCGTACTTTTTCGAGCGCGCGCAAAAGCTGGCGGTGGACG
TGTACGACCGCGACGACGCGTCGGAGAAGGACGCCGACCTGCACCGCCAC
GACTACCTGGGCAGCGTGGAGCTGTCCGTGCCGTCGCTGGTGCGCGCGCC
GGGGCAGCGAAAGACGCTGCCGCTGCGCATCGCGCAGCGCCCGCACCACC
GCTGCGGCTCGCTCACCGTGATCGCGGAGAACGTGTCGCACAGCAAGCTG
CGCATCGCGTTCAACCCGCGCCTGTCGTCGTTTGCGCCGCCGTCGCGCGC
GCTGTCGTTTGCGCGCGCGCGCGGGCCGTTTCTCACCGTGTCGCGCGCCG
CGGCGGACGGCGACGACGTCAACGCGCGCAGCGCGCAGCGTATCATCGTG
TGGCGCTCGCAGGCGCCCGCCGTGCACACGGCGCCGCGCGCGTTTGCGTT
CGAGCAGCTGTCGCACAACTACGAAAAGTTTTGTCGGCGCGACGAGGAGC
TGCCGCTGCTGTTCCAGCTGTCGTACCACAGCGGCGGGCGAGAGCGCGTG
GTGGCCGACGCCACCCAGTCGCTCAAGGAGTGCGCGCGCAACGACTGGCG
CATCGCGCTCCGCATGCTACGCACGCGCTGTCTGTCGCCGCCGCGCAACC
GCGCGCCCGCGCTGCACCTGGAGAACCGCACCATGACGGAGGACCGCACC
TTTCTGGACTACATCATCGGCGGCTGCGACATGTCGCTGGTGGTGGCCAT
CGACTTTACGGCCAGCAACGGCGACCCTTCGCAGCGCGGCACGCTGCACT
TTTTCGACTCCATGGAGCCCAACGAGTACGAGCTGGCCATTCGCGCCGTG
GGCGACATTCTGGCGGCGTACAGCTCGGACCAACGGTTCCCGGCGTACGG
CTTTGGCGCCAAGCTGCCACCCGACTTTCACCAGCCGTGCCACAAGTTCT
CGCTCACGGGCAGCGCGGACCCCACCTGCCACACCGTGGACGACGTGCTC
AACATGTACCGGCAGACGCTGTACAACGTGCGGCTGTCGGGGCCGACGCA
CTTTTCGGAGGTGATTCGCGCCGCCGCCGAGCACGCCAACGTCGACGTGA
CGCAGAGCGCGCAGTCGTACTGCACGCTGCTCATCGTCACGGACGGCGTC
ATCAGCGACATGCAGAGCACGCTGCGCGAGATCTCGCTCGCCAGTCGACT
GCCCATGTCCATTGTGATCATCGGCGTGGGCGACGCCGACTTTACCGACA
TGCGCGAGCTGGACGGCGATGAACGCGAGCAGGACCGCGACATTGTGCAG
TTTGTGGTGTTTCGACAGTACCGCGATACGCCCGAGGTGCTGCGCGCCAT
GGTGCTGGAGGAGATCCCGGGGCAACTTGTGCAGTACATGACACAACGGA
ACATCATCCCCAACGCGCCGCCCGCCGATTAG
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Coding sequence (CDS) from alignment at tig00000895_pilon:132863..134644+

>Ggra624.t1 ID=Ggra624.t1|Name=Ggra624.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1782bp|location=Sequence derived from alignment at tig00000895_pilon:132863..134644+ (Gracilaria gracilis GNS1m male)
ATGTCGGTGGATACGTGCGAGTCGCGCCTCAGCATCCATCTGTCGTGCGC
CGACGTGCGCAACATGGACTTTATCGGCCGCTCCGACCCGTTCGCGCTGC
TGTATCTGGACCCCACCGGCGCCGTCGTGTCGCCGCGCGCGCACAGCGCC
GCCGCCTCGCCGTCAGAcgccgccgccgccgccgccgccgccgccgccgT
CGGCGGTGCTGCGTCTCCCAcgcgcgcgcgctccgcgcgcgcggtgggcg
gcggcggcgcgggcggaccgcccgtgcgcgacgcgcgctggcagcgcgTC
GGCTGCACGGAGACGGTGTACAACTCGCTGTCCGTGACGTGGGCCACCAG
CTTTGAGATAGCGTACTTTTTCGAGCGCGCGCAAAAGCTGGCGGTGGACG
TGTACGACCGCGACGACGCGTCGGAGAAGGACGCCGACCTGCACCGCCAC
GACTACCTGGGCAGCGTGGAGCTGTCCGTGCCGTCGCTGGTGCGCGCGCC
GGGGCAGCGAAAGACGCTGCCGCTGCGCATCGCGCAGCGCCCGCACCACC
GCTGCGGCTCGCTCACCGTGATCGCGGAGAACGTGTCGCACAGCAAGCTG
CGCATCGCGTTCAACCCGCGCCTGTCGTCGTTTGCGCCGCCGTCGCGCGC
GCTGTCGTTTGCGCGCGCGCGCGGGCCGTTTCTCACCGTGTCGCGCGCCG
CGGCGGACGGCGACGACGTCAACGCGCGCAGCGCGCAGCGTATCATCGTG
TGGCGCTCGCAGGCGCCCGCCGTGCACACGGCGCCGCGCGCGTTTGCGTT
CGAGCAGCTGTCGCACAACTACGAAAAGTTTTGTCGGCGCGACGAGGAGC
TGCCGCTGCTGTTCCAGCTGTCGTACCACAGCGGCGGGCGAGAGCGCGTG
GTGGCCGACGCCACCCAGTCGCTCAAGGAGTGCGCGCGCAACGACTGGCG
CATCGCGCTCCGCATGCTACGCACGCGCTGTCTGTCGCCGCCGCGCAACC
GCGCGCCCGCGCTGCACCTGGAGAACCGCACCATGACGGAGGACCGCACC
TTTCTGGACTACATCATCGGCGGCTGCGACATGTCGCTGGTGGTGGCCAT
CGACTTTACGGCCAGCAACGGCGACCCTTCGCAGCGCGGCACGCTGCACT
TTTTCGACTCCATGGAGCCCAACGAGTACGAGCTGGCCATTCGCGCCGTG
GGCGACATTCTGGCGGCGTACAGCTCGGACCAACGGTTCCCGGCGTACGG
CTTTGGCGCCAAGCTGCCACCCGACTTTCACCAGCCGTGCCACAAGTTCT
CGCTCACGGGCAGCGCGGACCCCACCTGCCACACCGTGGACGACGTGCTC
AACATGTACCGGCAGACGCTGTACAACGTGCGGCTGTCGGGGCCGACGCA
CTTTTCGGAGGTGATTCGCGCCGCCGCCGAGCACGCCAACGTCGACGTGA
CGCAGAGCGCGCAGTCGTACTGCACGCTGCTCATCGTCACGGACGGCGTC
ATCAGCGACATGCAGAGCACGCTGCGCGAGATCTCGCTCGCCAGTCGACT
GCCCATGTCCATTGTGATCATCGGCGTGGGCGACGCCGACTTTACCGACA
TGCGCGAGCTGGACGGCGATGAACGCGAGCAGGACCGCGACATTGTGCAG
TTTGTGGTGTTTCGACAGTACCGCGATACGCCCGAGGTGCTGCGCGCCAT
GGTGCTGGAGGAGATCCCGGGGCAACTTGTGCAGTACATGACACAACGGA
ACATCATCCCCAACGCGCCGCCCGCCGATTAG
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