Ggra6237.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6237.t1
Unique NameGgra6237.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:114720..116123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT541CT
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Evalue1.34e-69
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6237Ggra6237Gracilaria gracilis GNS1m malegenetig00000879_pilon 114720..116123 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6237.t1.start1Ggra6237.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 114720..114722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6237.t1.CDS1Ggra6237.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 114720..116123 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6237.t1.exon1Ggra6237.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 114720..116123 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6237.t1.stop1Ggra6237.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 116121..116123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6237.t1Ggra6237.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 114720..116123 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6237.t1 ID=Ggra6237.t1|Name=Ggra6237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp
MFASALSFIAAVPIRPSRQPALRSRRPKSPSIPPRRVTRPIILSNHAPRP
NPPSPSPPSSHKSPQPQSRTPFLRNLALTAFAASLLVFPLRALRPRPSNA
APAEPTIARATPTKLRMSSQHAALAVKRRPTSHASHGLEGTPFVVAATAA
LLASALAVSVTHPIDTLKTMRQASTVKTSSLSLRSLYRGVFSNILKEAPN
AAIYLATYELFKVALMSFAPLAAVPLFTMCLAGMLGDALGSIVRVPAEII
NKRLQLQLSSNWHEAVRDAFLTDVGVQSTITSWFAVLCRDVPYGGLQIAA
YECVRLIFAQHGYTTLLFSVVAGAIAGLFASIVTTPADVLVTRLSTQPPQ
CYLETKRYMGCFATFRRILRDEGFSALWSGAMHRGLFYMPMIGLFFAAYE
SFKYLIINPQVVASSITSGWVLCMGVVASGFGGLGGLLNMPVLFALLFGC
SRIFGRYGRRSRSTSST*
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spliced messenger RNA

>Ggra6237.t1 ID=Ggra6237.t1|Name=Ggra6237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000879_pilon:114720..116123+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCGTCCGCTCTCTCCTTCATCGCCGCCGTGCCCATCCGACCGTC
GCGTCAACCCGCGCTGCGGTCGAGGCGCCCCAAATCCCCGTCCATCCCCC
CGCGCCGTGTCACCCGTCCAATCATTCTGTCAAACCATGCTCCGCGCCCA
AATCCCCCTTCCCCATCACCACCATCCTCCCACAAATCGCCGCAACCTCA
ATCGCGAACACCCTTCCTCCGCAACCTCGCGCTCACTGCATTCGCCGCCT
CCCTACTTGTGTTCCCCCTGCGTGCCCTGCGTCCCCGTCCGTCCAATGCC
GCGCCAGCAGAGCCCACTATCGCGCGAGCCACCCCCACCAAGCTGCGCAT
GTCATCGCAGCATGCCGCGCTCGCCGTCAAGCGCCGTCCGACCAGCCACG
CGTCGCACGGCCTGGAGGGAACGCCGTTTGTCGTCGCAGCGACCGCCGCT
CTGCTCGCTAGTGCGCTTGCCGTGTCCGTCACGCATCCGATCGACACGCT
CAAGACCATGCGACAGGCGTCCACTGTGAAAACTTCCTCGCTTTCGCTTC
GTTCATTGTACCGCGGTGTGTTCTCCAACATCCTTAAGGAGGCGCCCAAC
GCAGCCATTTACCTGGCTACTTATGAGTTGTTCAAGGTTGCTTTGATGAG
CTTTGCGCCGCTTGCTGCCGTGCCGTTGTTCACCATGTGCTTGGCGGGTA
TGCTTGGTGATGCGCTTGGTAGTATTGTCAGAGTACCTGCTGAGATCATC
AACAAGCGCTTGCAGCTGCAGTTGAGTTCCAATTGGCACGAGGCCGTCAG
AGATGCGTTTTTGACAGACGTCGGCGTGCAGAGTACCATCACATCGTGGT
TTGCTGTACTTTGTCGAGACGTTCCTTATGGAGGACTTCAGATCGCAGCA
TACGAATGTGTCCGACTCATCTTCGCGCAGCACGGATATACCACGCTGCT
GTTCAGCGTAGTGGCCGGTGCGATTGCCGGCCTGTTTGCATCCATTGTCA
CCACGCCGGCTGACGTGTTGGTCACAAGATTGAGCACACAGCCGCCTCAA
TGTTACTTGGAGACGAAGAGATATATGGGCTGTTTTGCCACCTTCCGACG
CATATTGAGGGATGAAGGCTTTTCTGCGCTTTGGAGCGGCGCTATGCACC
GAGGGTTGTTTTACATGCCCATGATTGGCTTGTTCTTTGCGGCTTATGAG
TCGTTCAAGTACCTCATCATTAACCCTCAGGTTGTCGCCAGTAGTATCAC
CAGCGGGTGGGTATTGTGCATGGGCGTTGTGGCGAGCGGGTTCGGTGGTT
TGGGAGGTTTGTTGAACATGCCCGTTTTGTTTGCATTGTTGTTTGGCTGT
TCGCGTATTTTTGGGCGATATGGTAGACGTTCGAGGTCGACCAGCAGTAC
GTAA
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protein sequence of Ggra6237.t1

>Ggra6237.t1 ID=Ggra6237.t1|Name=Ggra6237.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=468bp
MFASALSFIAAVPIRPSRQPALRSRRPKSPSIPPRRVTRPIILSNHAPRP
NPPSPSPPSSHKSPQPQSRTPFLRNLALTAFAASLLVFPLRALRPRPSNA
APAEPTIARATPTKLRMSSQHAALAVKRRPTSHASHGLEGTPFVVAATAA
LLASALAVSVTHPIDTLKTMRQASTVKTSSLSLRSLYRGVFSNILKEAPN
AAIYLATYELFKVALMSFAPLAAVPLFTMCLAGMLGDALGSIVRVPAEII
NKRLQLQLSSNWHEAVRDAFLTDVGVQSTITSWFAVLCRDVPYGGLQIAA
YECVRLIFAQHGYTTLLFSVVAGAIAGLFASIVTTPADVLVTRLSTQPPQ
CYLETKRYMGCFATFRRILRDEGFSALWSGAMHRGLFYMPMIGLFFAAYE
SFKYLIINPQVVASSITSGWVLCMGVVASGFGGLGGLLNMPVLFALLFGC
SRIFGRYGRRSRSTSST*
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mRNA from alignment at tig00000879_pilon:114720..116123+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6237.t1 ID=Ggra6237.t1|Name=Ggra6237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000879_pilon:114720..116123+ (Gracilaria gracilis GNS1m male)
ATGTTTGCGTCCGCTCTCTCCTTCATCGCCGCCGTGCCCATCCGACCGTC
GCGTCAACCCGCGCTGCGGTCGAGGCGCCCCAAATCCCCGTCCATCCCCC
CGCGCCGTGTCACCCGTCCAATCATTCTGTCAAACCATGCTCCGCGCCCA
AATCCCCCTTCCCCATCACCACCATCCTCCCACAAATCGCCGCAACCTCA
ATCGCGAACACCCTTCCTCCGCAACCTCGCGCTCACTGCATTCGCCGCCT
CCCTACTTGTGTTCCCCCTGCGTGCCCTGCGTCCCCGTCCGTCCAATGCC
GCGCCAGCAGAGCCCACTATCGCGCGAGCCACCCCCACCAAGCTGCGCAT
GTCATCGCAGCATGCCGCGCTCGCCGTCAAGCGCCGTCCGACCAGCCACG
CGTCGCACGGCCTGGAGGGAACGCCGTTTGTCGTCGCAGCGACCGCCGCT
CTGCTCGCTAGTGCGCTTGCCGTGTCCGTCACGCATCCGATCGACACGCT
CAAGACCATGCGACAGGCGTCCACTGTGAAAACTTCCTCGCTTTCGCTTC
GTTCATTGTACCGCGGTGTGTTCTCCAACATCCTTAAGGAGGCGCCCAAC
GCAGCCATTTACCTGGCTACTTATGAGTTGTTCAAGGTTGCTTTGATGAG
CTTTGCGCCGCTTGCTGCCGTGCCGTTGTTCACCATGTGCTTGGCGGGTA
TGCTTGGTGATGCGCTTGGTAGTATTGTCAGAGTACCTGCTGAGATCATC
AACAAGCGCTTGCAGCTGCAGTTGAGTTCCAATTGGCACGAGGCCGTCAG
AGATGCGTTTTTGACAGACGTCGGCGTGCAGAGTACCATCACATCGTGGT
TTGCTGTACTTTGTCGAGACGTTCCTTATGGAGGACTTCAGATCGCAGCA
TACGAATGTGTCCGACTCATCTTCGCGCAGCACGGATATACCACGCTGCT
GTTCAGCGTAGTGGCCGGTGCGATTGCCGGCCTGTTTGCATCCATTGTCA
CCACGCCGGCTGACGTGTTGGTCACAAGATTGAGCACACAGCCGCCTCAA
TGTTACTTGGAGACGAAGAGATATATGGGCTGTTTTGCCACCTTCCGACG
CATATTGAGGGATGAAGGCTTTTCTGCGCTTTGGAGCGGCGCTATGCACC
GAGGGTTGTTTTACATGCCCATGATTGGCTTGTTCTTTGCGGCTTATGAG
TCGTTCAAGTACCTCATCATTAACCCTCAGGTTGTCGCCAGTAGTATCAC
CAGCGGGTGGGTATTGTGCATGGGCGTTGTGGCGAGCGGGTTCGGTGGTT
TGGGAGGTTTGTTGAACATGCCCGTTTTGTTTGCATTGTTGTTTGGCTGT
TCGCGTATTTTTGGGCGATATGGTAGACGTTCGAGGTCGACCAGCAGTAC
GTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:114720..116123+

>Ggra6237.t1 ID=Ggra6237.t1|Name=Ggra6237.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000879_pilon:114720..116123+ (Gracilaria gracilis GNS1m male)
ATGTTTGCGTCCGCTCTCTCCTTCATCGCCGCCGTGCCCATCCGACCGTC
GCGTCAACCCGCGCTGCGGTCGAGGCGCCCCAAATCCCCGTCCATCCCCC
CGCGCCGTGTCACCCGTCCAATCATTCTGTCAAACCATGCTCCGCGCCCA
AATCCCCCTTCCCCATCACCACCATCCTCCCACAAATCGCCGCAACCTCA
ATCGCGAACACCCTTCCTCCGCAACCTCGCGCTCACTGCATTCGCCGCCT
CCCTACTTGTGTTCCCCCTGCGTGCCCTGCGTCCCCGTCCGTCCAATGCC
GCGCCAGCAGAGCCCACTATCGCGCGAGCCACCCCCACCAAGCTGCGCAT
GTCATCGCAGCATGCCGCGCTCGCCGTCAAGCGCCGTCCGACCAGCCACG
CGTCGCACGGCCTGGAGGGAACGCCGTTTGTCGTCGCAGCGACCGCCGCT
CTGCTCGCTAGTGCGCTTGCCGTGTCCGTCACGCATCCGATCGACACGCT
CAAGACCATGCGACAGGCGTCCACTGTGAAAACTTCCTCGCTTTCGCTTC
GTTCATTGTACCGCGGTGTGTTCTCCAACATCCTTAAGGAGGCGCCCAAC
GCAGCCATTTACCTGGCTACTTATGAGTTGTTCAAGGTTGCTTTGATGAG
CTTTGCGCCGCTTGCTGCCGTGCCGTTGTTCACCATGTGCTTGGCGGGTA
TGCTTGGTGATGCGCTTGGTAGTATTGTCAGAGTACCTGCTGAGATCATC
AACAAGCGCTTGCAGCTGCAGTTGAGTTCCAATTGGCACGAGGCCGTCAG
AGATGCGTTTTTGACAGACGTCGGCGTGCAGAGTACCATCACATCGTGGT
TTGCTGTACTTTGTCGAGACGTTCCTTATGGAGGACTTCAGATCGCAGCA
TACGAATGTGTCCGACTCATCTTCGCGCAGCACGGATATACCACGCTGCT
GTTCAGCGTAGTGGCCGGTGCGATTGCCGGCCTGTTTGCATCCATTGTCA
CCACGCCGGCTGACGTGTTGGTCACAAGATTGAGCACACAGCCGCCTCAA
TGTTACTTGGAGACGAAGAGATATATGGGCTGTTTTGCCACCTTCCGACG
CATATTGAGGGATGAAGGCTTTTCTGCGCTTTGGAGCGGCGCTATGCACC
GAGGGTTGTTTTACATGCCCATGATTGGCTTGTTCTTTGCGGCTTATGAG
TCGTTCAAGTACCTCATCATTAACCCTCAGGTTGTCGCCAGTAGTATCAC
CAGCGGGTGGGTATTGTGCATGGGCGTTGTGGCGAGCGGGTTCGGTGGTT
TGGGAGGTTTGTTGAACATGCCCGTTTTGTTTGCATTGTTGTTTGGCTGT
TCGCGTATTTTTGGGCGATATGGTAGACGTTCGAGGTCGACCAGCAGTAC
GTAA
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