Ggra6234.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6234.t1
Unique Name	Ggra6234.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:102894..104174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6234	Ggra6234	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 102894..104174 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6234.t1.start1	Ggra6234.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 102894..102896 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6234.t1.CDS1	Ggra6234.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 102894..104174 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6234.t1.exon1	Ggra6234.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 102894..104174 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6234.t1.stop1	Ggra6234.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 104172..104174 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6234.t1	Ggra6234.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 102894..104174 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:102894..104174+
coding sequence from alignment at tig00000879_pilon:102894..104174+

mRNA sequence

>Ggra6234.t1 ID=Ggra6234.t1|Name=Ggra6234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=427bp
MQSHDLVYRPHSLLPSRRSLSALRFSSSSSSSPPLKPSVASLPREYPRNT
RSAPTRSRSHSHIVFNGTPIHVVRQCRQQPPASVTPKPSPYSPAPRSPEL
SSSPSPTACVSDMELPPPPPLPLPPSFDQIRYQLPEHNHPPLSPLEPVDL
LSDDDDDSSSLASSDDLSNPPSPNNFFIHNGYRYDGDVFELRPPQERSIG
SRPERVLEHKPLLLANRQTFNRVYSEGTFNARPSSLRQPVARARGRHPAH
IDPADAAQPPPRKVTRPPSVRPPPVQVPQPQNSLADCIAAVRQNATVTGD
DKLKGLLAFSAVPVTRQSGTPPPAFLPPTPVAPAAPISMLHERENIKPLP
AMDKRGRSYTSLAGNMVYNPDMEEKVSASAVLRSQKALKAKTSKFGGGGG
SGKGGWFREKERERDKRPSFWKLLSR*

spliced messenger RNA

>Ggra6234.t1 ID=Ggra6234.t1|Name=Ggra6234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000879_pilon:102894..104174+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCACACGACCTGGTTTACCGACCGCACTCGCTATTACCCTCTCG
TCGTTCGCTTTCGGCGTTACGTTTctcctcctcctcctcctcctccCCGC
CGTTGAAACCCTCCGTCGCGTCACTGCCGCGCGAGTACCCGCGCAATACC
CGCTCCGCGCCCACGCGTTCGCGCTCGCACTCGCACATTGTATTCAACGG
CACCCCAATTCACGTTGTGCGCCAGTGCCGCCAACAACCGCCTGCTTCCG
TCACTCCGAAACCCTCTCCTTATTCGCCGGCGCCTCGGTCGCCGGAGTTA
TCGTCATCACCTTCACCAACTGCCTGCGTGAGCGATATGGAACTACCACC
TCCACCTCCCTTACCGCTCCCGCCTTCGTTCGACCAAATTCGCTACCAGC
TCCCCGAACACAACCACCCGCCGTTATCCCCGCTGGAACCCGTCGACCTG
CTCAGCGACGACGACGACGATTCCTCGTCGCTCGCTTCCTCCGATGACCT
CTCAAACCCCCCTTCTCCTAACAACTTCTTCATTCACAACGGCTATCGCT
ACGACGGCGACGTCTTCGAGTTGCGCCCCCCTCAAGAGCGCTCCATTGGC
TCTCGCCCGGAACGCGTGCTGGAACACAAGCCGTTACTACTTGCAAACCG
ACAGACCTTCAACCGCGTCTACTCGGAAGGCACCTTCAACGCGCGGCCCT
CCTCATTACGACAGCCCGTAGCGCGCGCAAGGGGCAGACACCCTGCGCAT
ATTGACCCCGCTGACGCCGCGCAACCCCCGCCAAGAAAGGTCACCAGGCC
GCCGAGTGTGCGGCCTCCGCCCGTGCAAGTGCCCCAACCGCAGAATAGTC
TGGCGGACTGCATTGCGGCTGTCAGACAGAATGCTACCGTCACCGGCGAC
GATAAACTGAAGGGCTTGCTGGCCTTTTCTGCGGTTCCCGTCACCAGGCA
GAGTGGAACGCCGCCGCCGGCGTTTTTACCGCCCACGCCGGTTGCGCCGG
CGGCGCCGATTTCCATGCTGCATGAGCGCGAAAATATCAAACCACTGCCG
GCTATGGATAAGCGTGGACGTAGCTATACGTCGCTTGCGGGCAATATGGT
GTATAACCCGGATATGGAGGAAAAGGTGTCTGCGAGCGCGGTGCTGCGCT
CGCAAAAGGCGCTGAAGGCCAAGACCTCCAAATTTGGAGGTGGCGGTGGC
AGTGGGAAAGGCGGTTGGTTTAGAGAAAAGGAGAGGGAAAGAGATAAGAG
ACCGTCTTTTTGGAAGCTATTGTCTCGCTGA

protein sequence of Ggra6234.t1

>Ggra6234.t1 ID=Ggra6234.t1|Name=Ggra6234.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=427bp
MQSHDLVYRPHSLLPSRRSLSALRFSSSSSSSPPLKPSVASLPREYPRNT
RSAPTRSRSHSHIVFNGTPIHVVRQCRQQPPASVTPKPSPYSPAPRSPEL
SSSPSPTACVSDMELPPPPPLPLPPSFDQIRYQLPEHNHPPLSPLEPVDL
LSDDDDDSSSLASSDDLSNPPSPNNFFIHNGYRYDGDVFELRPPQERSIG
SRPERVLEHKPLLLANRQTFNRVYSEGTFNARPSSLRQPVARARGRHPAH
IDPADAAQPPPRKVTRPPSVRPPPVQVPQPQNSLADCIAAVRQNATVTGD
DKLKGLLAFSAVPVTRQSGTPPPAFLPPTPVAPAAPISMLHERENIKPLP
AMDKRGRSYTSLAGNMVYNPDMEEKVSASAVLRSQKALKAKTSKFGGGGG
SGKGGWFREKERERDKRPSFWKLLSR*

mRNA from alignment at tig00000879_pilon:102894..104174+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6234.t1 ID=Ggra6234.t1|Name=Ggra6234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000879_pilon:102894..104174+ (Gracilaria gracilis GNS1m male)
ATGCAATCACACGACCTGGTTTACCGACCGCACTCGCTATTACCCTCTCG
TCGTTCGCTTTCGGCGTTACGTTTctcctcctcctcctcctcctccCCGC
CGTTGAAACCCTCCGTCGCGTCACTGCCGCGCGAGTACCCGCGCAATACC
CGCTCCGCGCCCACGCGTTCGCGCTCGCACTCGCACATTGTATTCAACGG
CACCCCAATTCACGTTGTGCGCCAGTGCCGCCAACAACCGCCTGCTTCCG
TCACTCCGAAACCCTCTCCTTATTCGCCGGCGCCTCGGTCGCCGGAGTTA
TCGTCATCACCTTCACCAACTGCCTGCGTGAGCGATATGGAACTACCACC
TCCACCTCCCTTACCGCTCCCGCCTTCGTTCGACCAAATTCGCTACCAGC
TCCCCGAACACAACCACCCGCCGTTATCCCCGCTGGAACCCGTCGACCTG
CTCAGCGACGACGACGACGATTCCTCGTCGCTCGCTTCCTCCGATGACCT
CTCAAACCCCCCTTCTCCTAACAACTTCTTCATTCACAACGGCTATCGCT
ACGACGGCGACGTCTTCGAGTTGCGCCCCCCTCAAGAGCGCTCCATTGGC
TCTCGCCCGGAACGCGTGCTGGAACACAAGCCGTTACTACTTGCAAACCG
ACAGACCTTCAACCGCGTCTACTCGGAAGGCACCTTCAACGCGCGGCCCT
CCTCATTACGACAGCCCGTAGCGCGCGCAAGGGGCAGACACCCTGCGCAT
ATTGACCCCGCTGACGCCGCGCAACCCCCGCCAAGAAAGGTCACCAGGCC
GCCGAGTGTGCGGCCTCCGCCCGTGCAAGTGCCCCAACCGCAGAATAGTC
TGGCGGACTGCATTGCGGCTGTCAGACAGAATGCTACCGTCACCGGCGAC
GATAAACTGAAGGGCTTGCTGGCCTTTTCTGCGGTTCCCGTCACCAGGCA
GAGTGGAACGCCGCCGCCGGCGTTTTTACCGCCCACGCCGGTTGCGCCGG
CGGCGCCGATTTCCATGCTGCATGAGCGCGAAAATATCAAACCACTGCCG
GCTATGGATAAGCGTGGACGTAGCTATACGTCGCTTGCGGGCAATATGGT
GTATAACCCGGATATGGAGGAAAAGGTGTCTGCGAGCGCGGTGCTGCGCT
CGCAAAAGGCGCTGAAGGCCAAGACCTCCAAATTTGGAGGTGGCGGTGGC
AGTGGGAAAGGCGGTTGGTTTAGAGAAAAGGAGAGGGAAAGAGATAAGAG
ACCGTCTTTTTGGAAGCTATTGTCTCGCTGA

Coding sequence (CDS) from alignment at tig00000879_pilon:102894..104174+

>Ggra6234.t1 ID=Ggra6234.t1|Name=Ggra6234.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1281bp|location=Sequence derived from alignment at tig00000879_pilon:102894..104174+ (Gracilaria gracilis GNS1m male)
ATGCAATCACACGACCTGGTTTACCGACCGCACTCGCTATTACCCTCTCG
TCGTTCGCTTTCGGCGTTACGTTTctcctcctcctcctcctcctccCCGC
CGTTGAAACCCTCCGTCGCGTCACTGCCGCGCGAGTACCCGCGCAATACC
CGCTCCGCGCCCACGCGTTCGCGCTCGCACTCGCACATTGTATTCAACGG
CACCCCAATTCACGTTGTGCGCCAGTGCCGCCAACAACCGCCTGCTTCCG
TCACTCCGAAACCCTCTCCTTATTCGCCGGCGCCTCGGTCGCCGGAGTTA
TCGTCATCACCTTCACCAACTGCCTGCGTGAGCGATATGGAACTACCACC
TCCACCTCCCTTACCGCTCCCGCCTTCGTTCGACCAAATTCGCTACCAGC
TCCCCGAACACAACCACCCGCCGTTATCCCCGCTGGAACCCGTCGACCTG
CTCAGCGACGACGACGACGATTCCTCGTCGCTCGCTTCCTCCGATGACCT
CTCAAACCCCCCTTCTCCTAACAACTTCTTCATTCACAACGGCTATCGCT
ACGACGGCGACGTCTTCGAGTTGCGCCCCCCTCAAGAGCGCTCCATTGGC
TCTCGCCCGGAACGCGTGCTGGAACACAAGCCGTTACTACTTGCAAACCG
ACAGACCTTCAACCGCGTCTACTCGGAAGGCACCTTCAACGCGCGGCCCT
CCTCATTACGACAGCCCGTAGCGCGCGCAAGGGGCAGACACCCTGCGCAT
ATTGACCCCGCTGACGCCGCGCAACCCCCGCCAAGAAAGGTCACCAGGCC
GCCGAGTGTGCGGCCTCCGCCCGTGCAAGTGCCCCAACCGCAGAATAGTC
TGGCGGACTGCATTGCGGCTGTCAGACAGAATGCTACCGTCACCGGCGAC
GATAAACTGAAGGGCTTGCTGGCCTTTTCTGCGGTTCCCGTCACCAGGCA
GAGTGGAACGCCGCCGCCGGCGTTTTTACCGCCCACGCCGGTTGCGCCGG
CGGCGCCGATTTCCATGCTGCATGAGCGCGAAAATATCAAACCACTGCCG
GCTATGGATAAGCGTGGACGTAGCTATACGTCGCTTGCGGGCAATATGGT
GTATAACCCGGATATGGAGGAAAAGGTGTCTGCGAGCGCGGTGCTGCGCT
CGCAAAAGGCGCTGAAGGCCAAGACCTCCAAATTTGGAGGTGGCGGTGGC
AGTGGGAAAGGCGGTTGGTTTAGAGAAAAGGAGAGGGAAAGAGATAAGAG
ACCGTCTTTTTGGAAGCTATTGTCTCGCTGA