Ggra6232.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6232.t1
Unique NameGgra6232.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:99396..100501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702797.1
PFAMsVKOR
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0003955,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010207,GO:0015979,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0019684,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065003,GO:0071840
Evalue1.2e-63
EggNOG OGsCOG4243@1|root,2QRER@2759|Eukaryota
DescriptionVitamin K epoxide reductase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6232Ggra6232Gracilaria gracilis GNS1m malegenetig00000879_pilon 99396..100501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6232.t1Ggra6232.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 99396..100501 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6232.t1.start1Ggra6232.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 99396..99398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6232.t1.CDS1Ggra6232.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 99396..100130 +
Ggra6232.t1.CDS2Ggra6232.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 100226..100501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6232.t1.exon1Ggra6232.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 99396..100130 +
Ggra6232.t1.exon2Ggra6232.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 100226..100501 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6232.t1.intron1Ggra6232.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 100131..100225 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6232.t1.stop1Ggra6232.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 100499..100501 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6232.t1 ID=Ggra6232.t1|Name=Ggra6232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MCTKSRPTDEEESVSQNGKPSSPSNFFISFRDIRKIMVAVSVLGMAETTY
LTYNKLFSSPGAICGTQGCLDVLSGPFSTFLGVPLTVFGALAYAIFAYLC
TWPLSAEDEETESEGSDKPTIVPADEVYAVRDAATRPLMLAVSTAMFTFS
VYLVNLLVFVIRSMCPYCVFSACLSTALFIFTAFIGKAVPEWKTAFKIGT
ASAFFATVCAAALFFLGMPAYSQAQGSGVPQAPPAITLSSDSDSIRTAEK
LAQKKTKMYGAYWCTHCYDQKQRFGKQAFSRIPYIECDKNGVNTQYKLCR
EKRIPGYPTWEIEGELYPGEIEISELERLADESKGK*
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spliced messenger RNA

>Ggra6232.t1 ID=Ggra6232.t1|Name=Ggra6232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000879_pilon:99396..100501+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACCAAATCTCGACCAACAGATGAGGAAGAATCAGTTTCCCAGAA
TGGCAAACCGTCTTCTCCGTCAAACTTCTTCATATCGTTCAGAGACATTC
GCAAGATAATGGTGGCCGTATCCGTTTTAGGGATGGCAGAGACCACATAT
TTAACTTACAACAAGCTCTTTTCCTCGCCGGGTGCAATATGCGGAACTCA
AGGTTGTCTGGATGTACTTTCGGGACCGTTTTCAACTTTTCTTGGAGTGC
CATTGACAGTGTTTGGAGCCCTCGCTTACGCCATTTTTGCTTATCTTTGT
ACATGGCCTCTTTCAGCTGAGGACGAAGAGACTGAATCTGAGGGCAGCGA
TAAGCCCACAATTGTTCCAGCAGATGAGGTGTACGCTGTTAGAGACGCAG
CCACACGACCGCTGATGCTAGCTGTGTCAACCGCCATGTTCACGTTTTCC
GTATATCTGGTGAACCTTCTTGTGTTTGTAATTCGCTCAATGTGTCCATA
TTGTGTGTTTTCCGCATGCCTTAGTACCGCACTTTTCATTTTCACTGCCT
TTATAGGCAAGGCAGTTCCAGAATGGAAGACTGCGTTCAAGATTGGAACA
GCTTCTGCTTTCTTTGCTACTGTATGTGCTGCAGCTCTGTTCTTCCTTGG
CATGCCTGCCTACTCACAGGCACAAGGATCTGGGGTTCCACAAGCACCTC
CAGCGATTACTCTCTCATCCGACTCCGACTCAATTAGAACTGCGGAGAAG
CTGGCTCAGAAGAAGACAAAAATGTATGGAGCCTATTGGTGCACTCATTG
CTATGACCAGAAACAACGCTTCGGAAAGCAGGCTTTTTCACGCATCCCGT
ATATTGAGTGCGACAAGAACGGTGTCAACACACAGTATAAGCTTTGTAGA
GAAAAACGGATTCCCGGTTATCCCACTTGGGAGATTGAGGGGGAGCTGTA
CCCTGGTGAGATTGAGATCTCGGAGCTCGAAAGACTTGCCGACGAATCCA
AAGGGAAGTAA
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protein sequence of Ggra6232.t1

>Ggra6232.t1 ID=Ggra6232.t1|Name=Ggra6232.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MCTKSRPTDEEESVSQNGKPSSPSNFFISFRDIRKIMVAVSVLGMAETTY
LTYNKLFSSPGAICGTQGCLDVLSGPFSTFLGVPLTVFGALAYAIFAYLC
TWPLSAEDEETESEGSDKPTIVPADEVYAVRDAATRPLMLAVSTAMFTFS
VYLVNLLVFVIRSMCPYCVFSACLSTALFIFTAFIGKAVPEWKTAFKIGT
ASAFFATVCAAALFFLGMPAYSQAQGSGVPQAPPAITLSSDSDSIRTAEK
LAQKKTKMYGAYWCTHCYDQKQRFGKQAFSRIPYIECDKNGVNTQYKLCR
EKRIPGYPTWEIEGELYPGEIEISELERLADESKGK*
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mRNA from alignment at tig00000879_pilon:99396..100501+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6232.t1 ID=Ggra6232.t1|Name=Ggra6232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1106bp|location=Sequence derived from alignment at tig00000879_pilon:99396..100501+ (Gracilaria gracilis GNS1m male)
ATGTGCACCAAATCTCGACCAACAGATGAGGAAGAATCAGTTTCCCAGAA
TGGCAAACCGTCTTCTCCGTCAAACTTCTTCATATCGTTCAGAGACATTC
GCAAGATAATGGTGGCCGTATCCGTTTTAGGGATGGCAGAGACCACATAT
TTAACTTACAACAAGCTCTTTTCCTCGCCGGGTGCAATATGCGGAACTCA
AGGTTGTCTGGATGTACTTTCGGGACCGTTTTCAACTTTTCTTGGAGTGC
CATTGACAGTGTTTGGAGCCCTCGCTTACGCCATTTTTGCTTATCTTTGT
ACATGGCCTCTTTCAGCTGAGGACGAAGAGACTGAATCTGAGGGCAGCGA
TAAGCCCACAATTGTTCCAGCAGATGAGGTGTACGCTGTTAGAGACGCAG
CCACACGACCGCTGATGCTAGCTGTGTCAACCGCCATGTTCACGTTTTCC
GTATATCTGGTGAACCTTCTTGTGTTTGTAATTCGCTCAATGTGTCCATA
TTGTGTGTTTTCCGCATGCCTTAGTACCGCACTTTTCATTTTCACTGCCT
TTATAGGCAAGGCAGTTCCAGAATGGAAGACTGCGTTCAAGATTGGAACA
GCTTCTGCTTTCTTTGCTACTGTATGTGCTGCAGCTCTGTTCTTCCTTGG
CATGCCTGCCTACTCACAGGCACAAGGATCTGGGGTTCCACAAGCACCTC
CAGCGATTACTCTCTCATCCGACTCCGACTCAATTGTAAGTTCTGAGGAA
GATAACCCCAACACATATATTTAGTTTACAACTCACACATATCTTTCTTA
ACACACCTGTTGTCCGTGCGACGCGTGCAGAGAACTGCGGAGAAGCTGGC
TCAGAAGAAGACAAAAATGTATGGAGCCTATTGGTGCACTCATTGCTATG
ACCAGAAACAACGCTTCGGAAAGCAGGCTTTTTCACGCATCCCGTATATT
GAGTGCGACAAGAACGGTGTCAACACACAGTATAAGCTTTGTAGAGAAAA
ACGGATTCCCGGTTATCCCACTTGGGAGATTGAGGGGGAGCTGTACCCTG
GTGAGATTGAGATCTCGGAGCTCGAAAGACTTGCCGACGAATCCAAAGGG
AAGTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:99396..100501+

>Ggra6232.t1 ID=Ggra6232.t1|Name=Ggra6232.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000879_pilon:99396..100501+ (Gracilaria gracilis GNS1m male)
ATGTGCACCAAATCTCGACCAACAGATGAGGAAGAATCAGTTTCCCAGAA
TGGCAAACCGTCTTCTCCGTCAAACTTCTTCATATCGTTCAGAGACATTC
GCAAGATAATGGTGGCCGTATCCGTTTTAGGGATGGCAGAGACCACATAT
TTAACTTACAACAAGCTCTTTTCCTCGCCGGGTGCAATATGCGGAACTCA
AGGTTGTCTGGATGTACTTTCGGGACCGTTTTCAACTTTTCTTGGAGTGC
CATTGACAGTGTTTGGAGCCCTCGCTTACGCCATTTTTGCTTATCTTTGT
ACATGGCCTCTTTCAGCTGAGGACGAAGAGACTGAATCTGAGGGCAGCGA
TAAGCCCACAATTGTTCCAGCAGATGAGGTGTACGCTGTTAGAGACGCAG
CCACACGACCGCTGATGCTAGCTGTGTCAACCGCCATGTTCACGTTTTCC
GTATATCTGGTGAACCTTCTTGTGTTTGTAATTCGCTCAATGTGTCCATA
TTGTGTGTTTTCCGCATGCCTTAGTACCGCACTTTTCATTTTCACTGCCT
TTATAGGCAAGGCAGTTCCAGAATGGAAGACTGCGTTCAAGATTGGAACA
GCTTCTGCTTTCTTTGCTACTGTATGTGCTGCAGCTCTGTTCTTCCTTGG
CATGCCTGCCTACTCACAGGCACAAGGATCTGGGGTTCCACAAGCACCTC
CAGCGATTACTCTCTCATCCGACTCCGACTCAATTAGAACTGCGGAGAAG
CTGGCTCAGAAGAAGACAAAAATGTATGGAGCCTATTGGTGCACTCATTG
CTATGACCAGAAACAACGCTTCGGAAAGCAGGCTTTTTCACGCATCCCGT
ATATTGAGTGCGACAAGAACGGTGTCAACACACAGTATAAGCTTTGTAGA
GAAAAACGGATTCCCGGTTATCCCACTTGGGAGATTGAGGGGGAGCTGTA
CCCTGGTGAGATTGAGATCTCGGAGCTCGAAAGACTTGCCGACGAATCCA
AAGGGAAGTAA
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