Ggra6231.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6231.t1
Unique Name	Ggra6231.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:96504..98468 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMJ172CT
PFAMs	CBS,CorC_HlyC,DUF21
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue	8.56e-131
EggNOG OGs	COG1253@1\|root,KOG2118@2759\|Eukaryota
Description	magnesium ion homeostasis
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6231	Ggra6231	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 96504..98468 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6231.t1.stop1	Ggra6231.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 96504..96506 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6231.t1.CDS1	Ggra6231.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 96504..98468 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6231.t1.exon1	Ggra6231.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 96504..98468 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6231.t1.start1	Ggra6231.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 98466..98468 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6231.t1	Ggra6231.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 96504..98468 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:96504..98468-
coding sequence from alignment at tig00000879_pilon:96504..98468-

mRNA sequence

>Ggra6231.t1 ID=Ggra6231.t1|Name=Ggra6231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=655bp
LLVSRSPQSPRRAPRFCTIASISAEHANYSATLGKDAPGIPNADRSVTGI
KSSVNTIIVVWQVFRNLLIAFGAVLLSFFLNCSARLSAATAYLNRDRCIA
PIEIVATTGKRRSKTYFATVYPIVTTYRRISLSVPLRPALTAVISGNALP
ASLAHVTTHASAPSDDKPPLQKSLLGFACVMFTVAAALAAAETAITTLWP
WKVRELAEKEGEKSPFSALESDLTRFLTTILVSTTSATIFSTAIATELAG
EVFGTAAVGYVTAAMTVFFLFFGEILPKAVAVHAPAKVARIMVPFISTLS
IIVYPVGKLLAAVSTFILRLLKLPLESDTTVSEEELRLIVAGADRSGSIE
KYESQIIHNVLDLEETDVKSIMCPRVDMVAIPNENTMAQLLELEAESHYS
RMPVFEGTIDNIVGIALAKSLLRYLTEDPDLLQKTKVAEVMEPAFFVPES
MSVWVALEEMRKRRLHMAVVVDEYGGTAGLVTLEDILEEVVGEIYDEDDD
YEAESQFIASIGDGYYTVDGQTSLEKVAQAFNLVLSEDDLDDYGTISGFL
CAQMGGIPEQGEEVVVSHVRFQVTEANDRRIIRLRAKILTEEEIAQITEE
ERRLKESEIEGDTQDLTRNVLDVEPAPKKPKLLNSDSNGTSEKGTSQEKI
EGFS*

spliced messenger RNA

>Ggra6231.t1 ID=Ggra6231.t1|Name=Ggra6231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000879_pilon:96504..98468- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTGGTTTCCCGATCACCTCAATCACCAAGGCGTGCTCCGCGATTTTG
CACCATTGCATCGATATCCGCGGAGCACGCCAACTATTCGGCAACGCTTG
GAAAAGACGCTCCTGGAATACCAAATGCGGACAGAAGTGTAACCGGTATT
AAGTCTTCGGTGAACACCATCATCGTAGTGTGGCAAGTTTTCCGGAATCT
GCTTATAGCCTTCGGTGCTGTTTTGCTTTCATTTTTTCTCAACTGCTCAG
CAAGATTGAGCGCCGCGACAGCATATCTCAATCGAGACAGATGCATTGCT
CCGATCGAGATCGTAGCCACAACTGGGAAGCGCCGTTCGAAAACGTATTT
TGCAACAGTATATCCAATCGTCACAACGTATCGTCGGATTTCCTTATCTG
TTCCTTTGCGCCCGGCATTGACTGCGGTAATCAGCGGTAATGCACTTCCG
GCAAGTCTCGCCCACGTTACTACTCATGCCTCAGCTCCCTCAGATGATAA
ACCGCCTCTACAGAAGAGTCTGCTAGGCTTTGCATGTGTGATGTTCACCG
TGGCAGCTGCTCTAGCGGCGGCCGAGACCGCTATTACAACACTCTGGCCA
TGGAAAGTGCGAGAACTCGCCGAGAAAGAAGGCGAGAAATCGCCATTTTC
TGCTTTGGAGTCCGACCTCACCCGTTTCCTGACAACAATCTTGGTTTCCA
CGACATCCGCAACGATATTCTCGACTGCAATCGCCACAGAGCTGGCTGGA
GAAGTTTTTGGAACTGCAGCCGTCGGTTACGTGACCGCTGCTATGACAGT
CTTCTTTCTTTTCTTTGGTGAAATACTCCCCAAGGCCGTTGCGGTTCACG
CTCCTGCAAAAGTTGCTCGCATCATGGTTCCATTCATTAGTACCTTGTCA
ATTATTGTATATCCAGTTGGAAAACTGCTTGCGGCTGTCTCAACTTTCAT
TTTACGGCTTCTAAAGCTTCCTTTAGAAAGTGACACAACAGTCAGTGAGG
AGGAACTGAGACTTATTGTTGCTGGTGCTGACCGTTCGGGGAGCATCGAA
AAGTATGAGTCTCAAATCATTCACAATGTCTTGGATCTTGAAGAAACTGA
TGTGAAATCTATCATGTGCCCTAGAGTGGACATGGTGGCCATCCCAAATG
AAAACACAATGGCCCAGTTGTTGGAATTGGAAGCTGAATCACACTATTCT
CGAATGCCAGTCTTCGAAGGCACTATCGATAATATAGTCGGTATTGCATT
GGCAAAATCGCTACTTCGTTACCTCACTGAAGATCCTGATCTTCTACAGA
AGACAAAAGTTGCTGAAGTTATGGAACCTGCATTTTTTGTTCCAGAATCT
ATGTCAGTTTGGGTAGCCCTGGAAGAAATGAGAAAGCGCCGGTTGCATAT
GGCTGTTGTAGTAGACGAGTATGGAGGAACTGCTGGCTTAGTTACTCTCG
AAGATATTCTAGAGGAGGTTGTGGGTGAGATTTATGATGAAGATGACGAT
TACGAAGCGGAATCACAGTTTATTGCAAGTATTGGAGATGGATACTACAC
CGTAGACGGTCAGACGAGTCTGGAAAAAGTAGCACAGGCATTTAATCTTG
TCTTATCGGAAGACGACCTGGATGATTATGGAACAATATCGGGCTTCCTC
TGCGCTCAGATGGGCGGTATTCCTGAACAGGGTGAAGAGGTCGTCGTATC
TCATGTAAGATTCCAAGTTACTGAAGCTAATGATCGCAGAATCATTAGGC
TTCGGGCGAAGATTCTCACAGAAGAAGAAATTGCACAGATAACTGAAGAA
GAGCGGCGTCTTAAGGAAAGTGAGATAGAAGGGGATACCCAAGATCTAAC
GCGAAATGTATTGGACGTTGAACCTGCTCCCAAGAAACCGAAACTACTAA
ATTCTGATAGCAATGGAACTTCCGAGAAAGGTACTTCGCAGGAGAAAATC
GAAGGCTTCTCGTAG

protein sequence of Ggra6231.t1

>Ggra6231.t1 ID=Ggra6231.t1|Name=Ggra6231.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=655bp
LLVSRSPQSPRRAPRFCTIASISAEHANYSATLGKDAPGIPNADRSVTGI
KSSVNTIIVVWQVFRNLLIAFGAVLLSFFLNCSARLSAATAYLNRDRCIA
PIEIVATTGKRRSKTYFATVYPIVTTYRRISLSVPLRPALTAVISGNALP
ASLAHVTTHASAPSDDKPPLQKSLLGFACVMFTVAAALAAAETAITTLWP
WKVRELAEKEGEKSPFSALESDLTRFLTTILVSTTSATIFSTAIATELAG
EVFGTAAVGYVTAAMTVFFLFFGEILPKAVAVHAPAKVARIMVPFISTLS
IIVYPVGKLLAAVSTFILRLLKLPLESDTTVSEEELRLIVAGADRSGSIE
KYESQIIHNVLDLEETDVKSIMCPRVDMVAIPNENTMAQLLELEAESHYS
RMPVFEGTIDNIVGIALAKSLLRYLTEDPDLLQKTKVAEVMEPAFFVPES
MSVWVALEEMRKRRLHMAVVVDEYGGTAGLVTLEDILEEVVGEIYDEDDD
YEAESQFIASIGDGYYTVDGQTSLEKVAQAFNLVLSEDDLDDYGTISGFL
CAQMGGIPEQGEEVVVSHVRFQVTEANDRRIIRLRAKILTEEEIAQITEE
ERRLKESEIEGDTQDLTRNVLDVEPAPKKPKLLNSDSNGTSEKGTSQEKI
EGFS*

mRNA from alignment at tig00000879_pilon:96504..98468-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6231.t1 ID=Ggra6231.t1|Name=Ggra6231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000879_pilon:96504..98468- (Gracilaria gracilis GNS1m male)
TTGCTGGTTTCCCGATCACCTCAATCACCAAGGCGTGCTCCGCGATTTTG
CACCATTGCATCGATATCCGCGGAGCACGCCAACTATTCGGCAACGCTTG
GAAAAGACGCTCCTGGAATACCAAATGCGGACAGAAGTGTAACCGGTATT
AAGTCTTCGGTGAACACCATCATCGTAGTGTGGCAAGTTTTCCGGAATCT
GCTTATAGCCTTCGGTGCTGTTTTGCTTTCATTTTTTCTCAACTGCTCAG
CAAGATTGAGCGCCGCGACAGCATATCTCAATCGAGACAGATGCATTGCT
CCGATCGAGATCGTAGCCACAACTGGGAAGCGCCGTTCGAAAACGTATTT
TGCAACAGTATATCCAATCGTCACAACGTATCGTCGGATTTCCTTATCTG
TTCCTTTGCGCCCGGCATTGACTGCGGTAATCAGCGGTAATGCACTTCCG
GCAAGTCTCGCCCACGTTACTACTCATGCCTCAGCTCCCTCAGATGATAA
ACCGCCTCTACAGAAGAGTCTGCTAGGCTTTGCATGTGTGATGTTCACCG
TGGCAGCTGCTCTAGCGGCGGCCGAGACCGCTATTACAACACTCTGGCCA
TGGAAAGTGCGAGAACTCGCCGAGAAAGAAGGCGAGAAATCGCCATTTTC
TGCTTTGGAGTCCGACCTCACCCGTTTCCTGACAACAATCTTGGTTTCCA
CGACATCCGCAACGATATTCTCGACTGCAATCGCCACAGAGCTGGCTGGA
GAAGTTTTTGGAACTGCAGCCGTCGGTTACGTGACCGCTGCTATGACAGT
CTTCTTTCTTTTCTTTGGTGAAATACTCCCCAAGGCCGTTGCGGTTCACG
CTCCTGCAAAAGTTGCTCGCATCATGGTTCCATTCATTAGTACCTTGTCA
ATTATTGTATATCCAGTTGGAAAACTGCTTGCGGCTGTCTCAACTTTCAT
TTTACGGCTTCTAAAGCTTCCTTTAGAAAGTGACACAACAGTCAGTGAGG
AGGAACTGAGACTTATTGTTGCTGGTGCTGACCGTTCGGGGAGCATCGAA
AAGTATGAGTCTCAAATCATTCACAATGTCTTGGATCTTGAAGAAACTGA
TGTGAAATCTATCATGTGCCCTAGAGTGGACATGGTGGCCATCCCAAATG
AAAACACAATGGCCCAGTTGTTGGAATTGGAAGCTGAATCACACTATTCT
CGAATGCCAGTCTTCGAAGGCACTATCGATAATATAGTCGGTATTGCATT
GGCAAAATCGCTACTTCGTTACCTCACTGAAGATCCTGATCTTCTACAGA
AGACAAAAGTTGCTGAAGTTATGGAACCTGCATTTTTTGTTCCAGAATCT
ATGTCAGTTTGGGTAGCCCTGGAAGAAATGAGAAAGCGCCGGTTGCATAT
GGCTGTTGTAGTAGACGAGTATGGAGGAACTGCTGGCTTAGTTACTCTCG
AAGATATTCTAGAGGAGGTTGTGGGTGAGATTTATGATGAAGATGACGAT
TACGAAGCGGAATCACAGTTTATTGCAAGTATTGGAGATGGATACTACAC
CGTAGACGGTCAGACGAGTCTGGAAAAAGTAGCACAGGCATTTAATCTTG
TCTTATCGGAAGACGACCTGGATGATTATGGAACAATATCGGGCTTCCTC
TGCGCTCAGATGGGCGGTATTCCTGAACAGGGTGAAGAGGTCGTCGTATC
TCATGTAAGATTCCAAGTTACTGAAGCTAATGATCGCAGAATCATTAGGC
TTCGGGCGAAGATTCTCACAGAAGAAGAAATTGCACAGATAACTGAAGAA
GAGCGGCGTCTTAAGGAAAGTGAGATAGAAGGGGATACCCAAGATCTAAC
GCGAAATGTATTGGACGTTGAACCTGCTCCCAAGAAACCGAAACTACTAA
ATTCTGATAGCAATGGAACTTCCGAGAAAGGTACTTCGCAGGAGAAAATC
GAAGGCTTCTCGTAG

Coding sequence (CDS) from alignment at tig00000879_pilon:96504..98468-

>Ggra6231.t1 ID=Ggra6231.t1|Name=Ggra6231.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1965bp|location=Sequence derived from alignment at tig00000879_pilon:96504..98468- (Gracilaria gracilis GNS1m male)
TTGCTGGTTTCCCGATCACCTCAATCACCAAGGCGTGCTCCGCGATTTTG
CACCATTGCATCGATATCCGCGGAGCACGCCAACTATTCGGCAACGCTTG
GAAAAGACGCTCCTGGAATACCAAATGCGGACAGAAGTGTAACCGGTATT
AAGTCTTCGGTGAACACCATCATCGTAGTGTGGCAAGTTTTCCGGAATCT
GCTTATAGCCTTCGGTGCTGTTTTGCTTTCATTTTTTCTCAACTGCTCAG
CAAGATTGAGCGCCGCGACAGCATATCTCAATCGAGACAGATGCATTGCT
CCGATCGAGATCGTAGCCACAACTGGGAAGCGCCGTTCGAAAACGTATTT
TGCAACAGTATATCCAATCGTCACAACGTATCGTCGGATTTCCTTATCTG
TTCCTTTGCGCCCGGCATTGACTGCGGTAATCAGCGGTAATGCACTTCCG
GCAAGTCTCGCCCACGTTACTACTCATGCCTCAGCTCCCTCAGATGATAA
ACCGCCTCTACAGAAGAGTCTGCTAGGCTTTGCATGTGTGATGTTCACCG
TGGCAGCTGCTCTAGCGGCGGCCGAGACCGCTATTACAACACTCTGGCCA
TGGAAAGTGCGAGAACTCGCCGAGAAAGAAGGCGAGAAATCGCCATTTTC
TGCTTTGGAGTCCGACCTCACCCGTTTCCTGACAACAATCTTGGTTTCCA
CGACATCCGCAACGATATTCTCGACTGCAATCGCCACAGAGCTGGCTGGA
GAAGTTTTTGGAACTGCAGCCGTCGGTTACGTGACCGCTGCTATGACAGT
CTTCTTTCTTTTCTTTGGTGAAATACTCCCCAAGGCCGTTGCGGTTCACG
CTCCTGCAAAAGTTGCTCGCATCATGGTTCCATTCATTAGTACCTTGTCA
ATTATTGTATATCCAGTTGGAAAACTGCTTGCGGCTGTCTCAACTTTCAT
TTTACGGCTTCTAAAGCTTCCTTTAGAAAGTGACACAACAGTCAGTGAGG
AGGAACTGAGACTTATTGTTGCTGGTGCTGACCGTTCGGGGAGCATCGAA
AAGTATGAGTCTCAAATCATTCACAATGTCTTGGATCTTGAAGAAACTGA
TGTGAAATCTATCATGTGCCCTAGAGTGGACATGGTGGCCATCCCAAATG
AAAACACAATGGCCCAGTTGTTGGAATTGGAAGCTGAATCACACTATTCT
CGAATGCCAGTCTTCGAAGGCACTATCGATAATATAGTCGGTATTGCATT
GGCAAAATCGCTACTTCGTTACCTCACTGAAGATCCTGATCTTCTACAGA
AGACAAAAGTTGCTGAAGTTATGGAACCTGCATTTTTTGTTCCAGAATCT
ATGTCAGTTTGGGTAGCCCTGGAAGAAATGAGAAAGCGCCGGTTGCATAT
GGCTGTTGTAGTAGACGAGTATGGAGGAACTGCTGGCTTAGTTACTCTCG
AAGATATTCTAGAGGAGGTTGTGGGTGAGATTTATGATGAAGATGACGAT
TACGAAGCGGAATCACAGTTTATTGCAAGTATTGGAGATGGATACTACAC
CGTAGACGGTCAGACGAGTCTGGAAAAAGTAGCACAGGCATTTAATCTTG
TCTTATCGGAAGACGACCTGGATGATTATGGAACAATATCGGGCTTCCTC
TGCGCTCAGATGGGCGGTATTCCTGAACAGGGTGAAGAGGTCGTCGTATC
TCATGTAAGATTCCAAGTTACTGAAGCTAATGATCGCAGAATCATTAGGC
TTCGGGCGAAGATTCTCACAGAAGAAGAAATTGCACAGATAACTGAAGAA
GAGCGGCGTCTTAAGGAAAGTGAGATAGAAGGGGATACCCAAGATCTAAC
GCGAAATGTATTGGACGTTGAACCTGCTCCCAAGAAACCGAAACTACTAA
ATTCTGATAGCAATGGAACTTCCGAGAAAGGTACTTCGCAGGAGAAAATC
GAAGGCTTCTCGTAG