Ggra6228.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6228.t1
Unique Name	Ggra6228.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:89364..91565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6228	Ggra6228	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 89364..91565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6228.t1	Ggra6228.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 89364..91565 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6228.t1.start1	Ggra6228.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 89364..89366 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6228.t1.CDS1	Ggra6228.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 89364..89397 +
Ggra6228.t1.CDS2	Ggra6228.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 89504..90019 +
Ggra6228.t1.CDS3	Ggra6228.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 90172..91565 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6228.t1.exon1	Ggra6228.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 89364..89397 +
Ggra6228.t1.exon2	Ggra6228.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 89504..90019 +
Ggra6228.t1.exon3	Ggra6228.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 90172..91565 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6228.t1.intron1	Ggra6228.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000879_pilon 89398..89503 +
Ggra6228.t1.intron2	Ggra6228.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000879_pilon 90020..90171 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6228.t1.stop1	Ggra6228.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 91563..91565 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:89364..91565+
coding sequence from alignment at tig00000879_pilon:89364..91565+

mRNA sequence

>Ggra6228.t1 ID=Ggra6228.t1|Name=Ggra6228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp
MNNTQQALSNDDPEAIRRLQREWRIAKRKELEDKKRKKKYRTLETSVIQD
VAHNNHQYITMQSSSVSLPQSSAATAHFQLQPHMVQGQTTASNPLFANPM
QVGSAPSHSQPHTQVDYVDGKHHQATHHHSAANISRDVQSRSQENVQYPS
HHGVHSNRDPGQCSPSSLPHGIVQDNPGSINTSVGMSQHLGGHYLSPVRE
GSTFTTFGEHKVSHVQGTNEDERPMADVNRAENSVALSHAMTEEARQKME
VEEAQRRWRENKRKELAMKRARAASSKRGRKRTKFLHHHQIIGHPVQVVS
ANTPLHPTVPFTTSSGVTSGLPLSSSLHNPTTVDQLQVSSSEVPSAVVRS
MGASSSEPISTSIAMSSPAQVSVSFPLSSVPIPSSVAVPVVPALTIQHVQ
TPSFGTAHDPETGFSSLPLHPAHQFSGIVTTERVPQNGTDGSALNSIPAE
DSAMVYEPLSHNARDQRQTSGSPTSIPVAPVVCATDMMESRALQNEVSNN
ENGRGDSKLHSTTPAVCTPSHVKVNNENGVDHGIGDDEGHGSRAGKDDAD
YTVQTPIREQDKDTHANERATELEVRGTISTIDSEVHNTKPSPASERTVK
QFEEQGKRSEENVTGKEFEVPQETFQDAGDELMNSVTWQSLGSIENP*

spliced messenger RNA

>Ggra6228.t1 ID=Ggra6228.t1|Name=Ggra6228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00000879_pilon:89364..91565+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACACGCAGCAGGCGCTTTCAAACGATGATCCCGAAGCGATTCG
TCGCTTGCAGCGAGAATGGCGAATTGCCAAGCGAAAGGAGCTGGAGGACA
AGAAACGGAAGAAGAAATATCGAACGTTGGAAACGTCCGTCATCCAAGAT
GTTGCTCACAATAACCATCAGTATATAACCATGCAATCCAGTAGTGTTTC
TCTCCCCCAAAGCTCTGCAGCGACTGCACACTTTCAGCTTCAGCCTCATA
TGGTGCAAGGGCAAACCACTGCTTCGAATCCATTATTTGCGAATCCCATG
CAAGTCGGAAGCGCACCATCGCATTCACAGCCACACACACAGGTCGACTA
TGTCGATGGTAAGCATCATCAAGCGACGCACCACCATTCCGCAGCAAATA
TTTCACGCGACGTTCAGTCTAGATCGCAAGAAAACGTTCAATATCCCTCA
CATCACGGTGTTCATTCAAATCGGGATCCTGGCCAATGTTCCCCGTCGTC
TTTGCCCCACGGAATCGTTCAAGATAACCCTGGCTCAATTAATACATCTG
TGGGAATGTCGCAACATTTAGGCGGCCATTATTTATCGCCTGTAAGGGAA
GGTTCTACTTTCACTACTTTTGGAGAACATAAGGTTTCACACGTCCAAGG
CACAAATGAGGATGAGAGACCGATGGCTGATGTGAATCGCGCAGAAAATT
CCGTTGCTCTTAGTCACGCCATGACCGAAGAAGCTCGGCAGAAAATGGAA
GTTGAAGAAGCACAGCGAAGATGGAGGGAAAACAAACGGAAGGAACTCGC
TATGAAAAGGGCCAGGGCGGCTAGCTCGAAGCGGGGTCGAAAGCGCACGA
AGTTTCTTCATCATCATCAAATAATTGGCCACCCGGTACAGGTTGTTTCG
GCGAATACCCCTTTGCACCCAACAGTTCCATTCACAACTTCATCGGGAGT
AACAAGTGGATTACCACTATCATCATCGTTACACAACCCAACCACCGTCG
ATCAGCTTCAAGTTTCGTCCAGCGAAGTTCCTTCTGCCGTGGTTAGATCA
ATGGGAGCCTCGTCCTCTGAACCCATATCTACGTCAATTGCGATGTCAAG
CCCGGCTCAAGTGTCTGTATCTTTTCCCCTATCCTCTGTCCCAATTCCGT
CATCAGTTGCCGTACCTGTGGTTCCTGCGTTAACTATTCAACATGTACAA
ACTCCAAGCTTTGGAACCGCTCACGATCCCGAGACAGGATTCAGCTCTCT
TCCGTTGCATCCCGCTCATCAATTCTCAGGCATAGTAACAACAGAAAGAG
TACCTCAAAATGGTACCGATGGATCAGCTTTGAATAGCATCCCTGCCGAA
GACAGTGCTATGGTGTATGAACCTCTTTCCCACAACGCAAGGGACCAACG
TCAGACTTCTGGTTCTCCAACATCTATACCTGTAGCACCCGTGGTATGCG
CGACGGACATGATGGAATCGCGAGCATTGCAAAATGAAGTGTCTAATAAC
GAAAACGGAAGGGGTGATTCAAAATTGCACTCCACAACCCCAGCTGTTTG
CACTCCATCCCACGTTAAAGTAAACAACGAAAATGGAGTAGATCATGGGA
TCGGTGACGACGAGGGACATGGCTCGAGAGCTGGAAAAGACGACGCGGAT
TACACCGTTCAAACCCCAATAAGAGAACAGGACAAGGATACTCATGCCAA
TGAACGTGCGACGGAACTGGAGGTTAGAGGGACGATTTCAACAATAGACT
CCGAAGTCCATAACACAAAGCCTTCTCCAGCCAGCGAAAGAACTGTGAAA
CAGTTTGAAGAACAGGGAAAACGATCTGAGGAGAATGTAACGGGGAAGGA
ATTCGAGGTTCCACAAGAGACTTTTCAAGATGCCGGAGATGAGCTGATGA
ATTCGGTGACTTGGCAAAGTCTTGGAAGCATTGAGAACCCATAG

protein sequence of Ggra6228.t1

>Ggra6228.t1 ID=Ggra6228.t1|Name=Ggra6228.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=648bp
MNNTQQALSNDDPEAIRRLQREWRIAKRKELEDKKRKKKYRTLETSVIQD
VAHNNHQYITMQSSSVSLPQSSAATAHFQLQPHMVQGQTTASNPLFANPM
QVGSAPSHSQPHTQVDYVDGKHHQATHHHSAANISRDVQSRSQENVQYPS
HHGVHSNRDPGQCSPSSLPHGIVQDNPGSINTSVGMSQHLGGHYLSPVRE
GSTFTTFGEHKVSHVQGTNEDERPMADVNRAENSVALSHAMTEEARQKME
VEEAQRRWRENKRKELAMKRARAASSKRGRKRTKFLHHHQIIGHPVQVVS
ANTPLHPTVPFTTSSGVTSGLPLSSSLHNPTTVDQLQVSSSEVPSAVVRS
MGASSSEPISTSIAMSSPAQVSVSFPLSSVPIPSSVAVPVVPALTIQHVQ
TPSFGTAHDPETGFSSLPLHPAHQFSGIVTTERVPQNGTDGSALNSIPAE
DSAMVYEPLSHNARDQRQTSGSPTSIPVAPVVCATDMMESRALQNEVSNN
ENGRGDSKLHSTTPAVCTPSHVKVNNENGVDHGIGDDEGHGSRAGKDDAD
YTVQTPIREQDKDTHANERATELEVRGTISTIDSEVHNTKPSPASERTVK
QFEEQGKRSEENVTGKEFEVPQETFQDAGDELMNSVTWQSLGSIENP*

mRNA from alignment at tig00000879_pilon:89364..91565+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6228.t1 ID=Ggra6228.t1|Name=Ggra6228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000879_pilon:89364..91565+ (Gracilaria gracilis GNS1m male)
ATGAACAACACGCAGCAGGCGCTTTCAAACGATGGTATGTTTCTCTAGAT
GCATGTGTTCAGAGTGCGACAGGCGTACCCAAATATGATTCTAACTTGTT
TCATGTAAACTCTATTATCACCTGCTCGCGCCTTCTGCAGATCCCGAAGC
GATTCGTCGCTTGCAGCGAGAATGGCGAATTGCCAAGCGAAAGGAGCTGG
AGGACAAGAAACGGAAGAAGAAATATCGAACGTTGGAAACGTCCGTCATC
CAAGATGTTGCTCACAATAACCATCAGTATATAACCATGCAATCCAGTAG
TGTTTCTCTCCCCCAAAGCTCTGCAGCGACTGCACACTTTCAGCTTCAGC
CTCATATGGTGCAAGGGCAAACCACTGCTTCGAATCCATTATTTGCGAAT
CCCATGCAAGTCGGAAGCGCACCATCGCATTCACAGCCACACACACAGGT
CGACTATGTCGATGGTAAGCATCATCAAGCGACGCACCACCATTCCGCAG
CAAATATTTCACGCGACGTTCAGTCTAGATCGCAAGAAAACGTTCAATAT
CCCTCACATCACGGTGTTCATTCAAATCGGGATCCTGGCCAATGTTCCCC
GTCGTCTTTGCCCCACGGAATCGTTCAAGATAACCCTGGCTCAATTAATA
CATCTGGTATGTAGTCTTACTCTCAAGCGTGTGCTAACGATCTGTGGCAG
TCAATCCCGCAAGACTTGCGAAGATTGTCTGGTGAACCCGCCTCGTTTCC
ATCCAGCGACTGAAGCTAATAATTCGTCATGATTCTAACTCGACTATGCT
TCGAACAGTGGGAATGTCGCAACATTTAGGCGGCCATTATTTATCGCCTG
TAAGGGAAGGTTCTACTTTCACTACTTTTGGAGAACATAAGGTTTCACAC
GTCCAAGGCACAAATGAGGATGAGAGACCGATGGCTGATGTGAATCGCGC
AGAAAATTCCGTTGCTCTTAGTCACGCCATGACCGAAGAAGCTCGGCAGA
AAATGGAAGTTGAAGAAGCACAGCGAAGATGGAGGGAAAACAAACGGAAG
GAACTCGCTATGAAAAGGGCCAGGGCGGCTAGCTCGAAGCGGGGTCGAAA
GCGCACGAAGTTTCTTCATCATCATCAAATAATTGGCCACCCGGTACAGG
TTGTTTCGGCGAATACCCCTTTGCACCCAACAGTTCCATTCACAACTTCA
TCGGGAGTAACAAGTGGATTACCACTATCATCATCGTTACACAACCCAAC
CACCGTCGATCAGCTTCAAGTTTCGTCCAGCGAAGTTCCTTCTGCCGTGG
TTAGATCAATGGGAGCCTCGTCCTCTGAACCCATATCTACGTCAATTGCG
ATGTCAAGCCCGGCTCAAGTGTCTGTATCTTTTCCCCTATCCTCTGTCCC
AATTCCGTCATCAGTTGCCGTACCTGTGGTTCCTGCGTTAACTATTCAAC
ATGTACAAACTCCAAGCTTTGGAACCGCTCACGATCCCGAGACAGGATTC
AGCTCTCTTCCGTTGCATCCCGCTCATCAATTCTCAGGCATAGTAACAAC
AGAAAGAGTACCTCAAAATGGTACCGATGGATCAGCTTTGAATAGCATCC
CTGCCGAAGACAGTGCTATGGTGTATGAACCTCTTTCCCACAACGCAAGG
GACCAACGTCAGACTTCTGGTTCTCCAACATCTATACCTGTAGCACCCGT
GGTATGCGCGACGGACATGATGGAATCGCGAGCATTGCAAAATGAAGTGT
CTAATAACGAAAACGGAAGGGGTGATTCAAAATTGCACTCCACAACCCCA
GCTGTTTGCACTCCATCCCACGTTAAAGTAAACAACGAAAATGGAGTAGA
TCATGGGATCGGTGACGACGAGGGACATGGCTCGAGAGCTGGAAAAGACG
ACGCGGATTACACCGTTCAAACCCCAATAAGAGAACAGGACAAGGATACT
CATGCCAATGAACGTGCGACGGAACTGGAGGTTAGAGGGACGATTTCAAC
AATAGACTCCGAAGTCCATAACACAAAGCCTTCTCCAGCCAGCGAAAGAA
CTGTGAAACAGTTTGAAGAACAGGGAAAACGATCTGAGGAGAATGTAACG
GGGAAGGAATTCGAGGTTCCACAAGAGACTTTTCAAGATGCCGGAGATGA
GCTGATGAATTCGGTGACTTGGCAAAGTCTTGGAAGCATTGAGAACCCAT
AG

Coding sequence (CDS) from alignment at tig00000879_pilon:89364..91565+

>Ggra6228.t1 ID=Ggra6228.t1|Name=Ggra6228.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1944bp|location=Sequence derived from alignment at tig00000879_pilon:89364..91565+ (Gracilaria gracilis GNS1m male)
ATGAACAACACGCAGCAGGCGCTTTCAAACGATGATCCCGAAGCGATTCG
TCGCTTGCAGCGAGAATGGCGAATTGCCAAGCGAAAGGAGCTGGAGGACA
AGAAACGGAAGAAGAAATATCGAACGTTGGAAACGTCCGTCATCCAAGAT
GTTGCTCACAATAACCATCAGTATATAACCATGCAATCCAGTAGTGTTTC
TCTCCCCCAAAGCTCTGCAGCGACTGCACACTTTCAGCTTCAGCCTCATA
TGGTGCAAGGGCAAACCACTGCTTCGAATCCATTATTTGCGAATCCCATG
CAAGTCGGAAGCGCACCATCGCATTCACAGCCACACACACAGGTCGACTA
TGTCGATGGTAAGCATCATCAAGCGACGCACCACCATTCCGCAGCAAATA
TTTCACGCGACGTTCAGTCTAGATCGCAAGAAAACGTTCAATATCCCTCA
CATCACGGTGTTCATTCAAATCGGGATCCTGGCCAATGTTCCCCGTCGTC
TTTGCCCCACGGAATCGTTCAAGATAACCCTGGCTCAATTAATACATCTG
TGGGAATGTCGCAACATTTAGGCGGCCATTATTTATCGCCTGTAAGGGAA
GGTTCTACTTTCACTACTTTTGGAGAACATAAGGTTTCACACGTCCAAGG
CACAAATGAGGATGAGAGACCGATGGCTGATGTGAATCGCGCAGAAAATT
CCGTTGCTCTTAGTCACGCCATGACCGAAGAAGCTCGGCAGAAAATGGAA
GTTGAAGAAGCACAGCGAAGATGGAGGGAAAACAAACGGAAGGAACTCGC
TATGAAAAGGGCCAGGGCGGCTAGCTCGAAGCGGGGTCGAAAGCGCACGA
AGTTTCTTCATCATCATCAAATAATTGGCCACCCGGTACAGGTTGTTTCG
GCGAATACCCCTTTGCACCCAACAGTTCCATTCACAACTTCATCGGGAGT
AACAAGTGGATTACCACTATCATCATCGTTACACAACCCAACCACCGTCG
ATCAGCTTCAAGTTTCGTCCAGCGAAGTTCCTTCTGCCGTGGTTAGATCA
ATGGGAGCCTCGTCCTCTGAACCCATATCTACGTCAATTGCGATGTCAAG
CCCGGCTCAAGTGTCTGTATCTTTTCCCCTATCCTCTGTCCCAATTCCGT
CATCAGTTGCCGTACCTGTGGTTCCTGCGTTAACTATTCAACATGTACAA
ACTCCAAGCTTTGGAACCGCTCACGATCCCGAGACAGGATTCAGCTCTCT
TCCGTTGCATCCCGCTCATCAATTCTCAGGCATAGTAACAACAGAAAGAG
TACCTCAAAATGGTACCGATGGATCAGCTTTGAATAGCATCCCTGCCGAA
GACAGTGCTATGGTGTATGAACCTCTTTCCCACAACGCAAGGGACCAACG
TCAGACTTCTGGTTCTCCAACATCTATACCTGTAGCACCCGTGGTATGCG
CGACGGACATGATGGAATCGCGAGCATTGCAAAATGAAGTGTCTAATAAC
GAAAACGGAAGGGGTGATTCAAAATTGCACTCCACAACCCCAGCTGTTTG
CACTCCATCCCACGTTAAAGTAAACAACGAAAATGGAGTAGATCATGGGA
TCGGTGACGACGAGGGACATGGCTCGAGAGCTGGAAAAGACGACGCGGAT
TACACCGTTCAAACCCCAATAAGAGAACAGGACAAGGATACTCATGCCAA
TGAACGTGCGACGGAACTGGAGGTTAGAGGGACGATTTCAACAATAGACT
CCGAAGTCCATAACACAAAGCCTTCTCCAGCCAGCGAAAGAACTGTGAAA
CAGTTTGAAGAACAGGGAAAACGATCTGAGGAGAATGTAACGGGGAAGGA
ATTCGAGGTTCCACAAGAGACTTTTCAAGATGCCGGAGATGAGCTGATGA
ATTCGGTGACTTGGCAAAGTCTTGGAAGCATTGAGAACCCATAG