Ggra6221.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6221.t1
Unique NameGgra6221.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000167_piloncontigtig00000167_pilon:200399..200806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6221Ggra6221Gracilaria gracilis GNS1m malegenetig00000167_pilon 200399..200806 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6221.t1.stop1Ggra6221.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000167_pilon 200399..200401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6221.t1.CDS1Ggra6221.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000167_pilon 200399..200806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6221.t1.exon1Ggra6221.t1.exon1Gracilaria gracilis GNS1m maleexontig00000167_pilon 200399..200806 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6221.t1.start1Ggra6221.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000167_pilon 200804..200806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6221.t1Ggra6221.t1Gracilaria gracilis GNS1m malepolypeptidetig00000167_pilon 200399..200806 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6221.t1 ID=Ggra6221.t1|Name=Ggra6221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=136bp
MRQLRRLSSSSLRTVQVQTDAATAVIVSVFRVASVHAAVVRFPSTLLLSP
FSQMPVLEQLVVSEAVGKGPTPLEPVLCMHHALRLYCPHLQTARLQTVRL
QTVRLPYPAYAAYKGRKLQAIGCGLTVGKKCSDGP*
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spliced messenger RNA

>Ggra6221.t1 ID=Ggra6221.t1|Name=Ggra6221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000167_pilon:200399..200806- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAATTGCGCCGACTGAGCTCTTCTTCGCTACGAACCGTGCAAGT
ACAGACGGATGCTGCAACTGCTGTCATCGTCTCTGTGTTTCGCGTCGCGA
GTGTGCACGCTGCAGTTGTACGCTTCCCATCCACGCTGCTACTCTCGCCG
TTCTCACAGATGCCTGTTCTGGAACAGCTGGTGGTATCAGAAGCTGTTGG
CAAGGGACCAACTCCCCTGGAACCTGTGCTGTGTATGCACCATGCGCTGC
GGCTGTACTGCCCGCACTTGCAGACCGCGCGTCTGCAGACCGTGCGTCTG
CAGACCGTGCGTCTGCCGTACCCGGCGTATGCGGCATATAAAGGCAGAAA
GCTGCAGGCCATCGGATGTGGGCTCACGGTGGGGAAGAAATGCAGTGATG
GACCATGA
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protein sequence of Ggra6221.t1

>Ggra6221.t1 ID=Ggra6221.t1|Name=Ggra6221.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=136bp
MRQLRRLSSSSLRTVQVQTDAATAVIVSVFRVASVHAAVVRFPSTLLLSP
FSQMPVLEQLVVSEAVGKGPTPLEPVLCMHHALRLYCPHLQTARLQTVRL
QTVRLPYPAYAAYKGRKLQAIGCGLTVGKKCSDGP*
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mRNA from alignment at tig00000167_pilon:200399..200806-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6221.t1 ID=Ggra6221.t1|Name=Ggra6221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000167_pilon:200399..200806- (Gracilaria gracilis GNS1m male)
ATGCGCCAATTGCGCCGACTGAGCTCTTCTTCGCTACGAACCGTGCAAGT
ACAGACGGATGCTGCAACTGCTGTCATCGTCTCTGTGTTTCGCGTCGCGA
GTGTGCACGCTGCAGTTGTACGCTTCCCATCCACGCTGCTACTCTCGCCG
TTCTCACAGATGCCTGTTCTGGAACAGCTGGTGGTATCAGAAGCTGTTGG
CAAGGGACCAACTCCCCTGGAACCTGTGCTGTGTATGCACCATGCGCTGC
GGCTGTACTGCCCGCACTTGCAGACCGCGCGTCTGCAGACCGTGCGTCTG
CAGACCGTGCGTCTGCCGTACCCGGCGTATGCGGCATATAAAGGCAGAAA
GCTGCAGGCCATCGGATGTGGGCTCACGGTGGGGAAGAAATGCAGTGATG
GACCATGA
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Coding sequence (CDS) from alignment at tig00000167_pilon:200399..200806-

>Ggra6221.t1 ID=Ggra6221.t1|Name=Ggra6221.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000167_pilon:200399..200806- (Gracilaria gracilis GNS1m male)
ATGCGCCAATTGCGCCGACTGAGCTCTTCTTCGCTACGAACCGTGCAAGT
ACAGACGGATGCTGCAACTGCTGTCATCGTCTCTGTGTTTCGCGTCGCGA
GTGTGCACGCTGCAGTTGTACGCTTCCCATCCACGCTGCTACTCTCGCCG
TTCTCACAGATGCCTGTTCTGGAACAGCTGGTGGTATCAGAAGCTGTTGG
CAAGGGACCAACTCCCCTGGAACCTGTGCTGTGTATGCACCATGCGCTGC
GGCTGTACTGCCCGCACTTGCAGACCGCGCGTCTGCAGACCGTGCGTCTG
CAGACCGTGCGTCTGCCGTACCCGGCGTATGCGGCATATAAAGGCAGAAA
GCTGCAGGCCATCGGATGTGGGCTCACGGTGGGGAAGAAATGCAGTGATG
GACCATGA
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