Ggra622.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra622.t1
Unique NameGgra622.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length107
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:95486..95806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra622Ggra622Gracilaria gracilis GNS1m malegenetig00000895_pilon 95486..95806 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra622.t1.start1Ggra622.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 95486..95488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra622.t1.CDS1Ggra622.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 95486..95806 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra622.t1.exon1Ggra622.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 95486..95806 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra622.t1.stop1Ggra622.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 95804..95806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra622.t1Ggra622.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 95486..95806 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra622.t1 ID=Ggra622.t1|Name=Ggra622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=107bp
MADLGINTELLVLSGDLKQCKRPEDPYERHWMKGFDMFKEKAAVIERILR
EDLEKRRMGLLHWKSLDCEAIWRGVNEVVNQPMAFRLHITYREAKIRDLL
NAIGQR*
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spliced messenger RNA

>Ggra622.t1 ID=Ggra622.t1|Name=Ggra622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00000895_pilon:95486..95806+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATCTGGGGATTAACACTGAGTTGCTGGTCCTTTCGGGCGACCT
GAAACAATGCAAAAGACCAGAAGATCCGTATGAACGGCACTGGATGAAGG
GGTTTGATATGTTCAAAGAAAAAGCCGCGGTGATAGAGCGCATTTTGCGC
GAAGACCTAGAGAAACGCCGAATGGGCTTGCTTCATTGGAAAAGCCTCGA
CTGCGAAGCCATTTGGCGGGGGGTCAATGAGGTCGTGAACCAACCTATGG
CGTTCCGCCTACATATTACCTATCGAGAAGCAAAGATCCGCGACCTCCTC
AATGCTATAGGCCAAAGGTGA
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protein sequence of Ggra622.t1

>Ggra622.t1 ID=Ggra622.t1|Name=Ggra622.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=107bp
MADLGINTELLVLSGDLKQCKRPEDPYERHWMKGFDMFKEKAAVIERILR
EDLEKRRMGLLHWKSLDCEAIWRGVNEVVNQPMAFRLHITYREAKIRDLL
NAIGQR*
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mRNA from alignment at tig00000895_pilon:95486..95806+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra622.t1 ID=Ggra622.t1|Name=Ggra622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00000895_pilon:95486..95806+ (Gracilaria gracilis GNS1m male)
ATGGCCGATCTGGGGATTAACACTGAGTTGCTGGTCCTTTCGGGCGACCT
GAAACAATGCAAAAGACCAGAAGATCCGTATGAACGGCACTGGATGAAGG
GGTTTGATATGTTCAAAGAAAAAGCCGCGGTGATAGAGCGCATTTTGCGC
GAAGACCTAGAGAAACGCCGAATGGGCTTGCTTCATTGGAAAAGCCTCGA
CTGCGAAGCCATTTGGCGGGGGGTCAATGAGGTCGTGAACCAACCTATGG
CGTTCCGCCTACATATTACCTATCGAGAAGCAAAGATCCGCGACCTCCTC
AATGCTATAGGCCAAAGGTGA
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Coding sequence (CDS) from alignment at tig00000895_pilon:95486..95806+

>Ggra622.t1 ID=Ggra622.t1|Name=Ggra622.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=321bp|location=Sequence derived from alignment at tig00000895_pilon:95486..95806+ (Gracilaria gracilis GNS1m male)
ATGGCCGATCTGGGGATTAACACTGAGTTGCTGGTCCTTTCGGGCGACCT
GAAACAATGCAAAAGACCAGAAGATCCGTATGAACGGCACTGGATGAAGG
GGTTTGATATGTTCAAAGAAAAAGCCGCGGTGATAGAGCGCATTTTGCGC
GAAGACCTAGAGAAACGCCGAATGGGCTTGCTTCATTGGAAAAGCCTCGA
CTGCGAAGCCATTTGGCGGGGGGTCAATGAGGTCGTGAACCAACCTATGG
CGTTCCGCCTACATATTACCTATCGAGAAGCAAAGATCCGCGACCTCCTC
AATGCTATAGGCCAAAGGTGA
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