Ggra620.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra620.t1
Unique NameGgra620.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:88035..88723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra620Ggra620Gracilaria gracilis GNS1m malegenetig00000895_pilon 88035..88723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra620.t1Ggra620.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 88035..88723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra620.t1.CDS1Ggra620.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 88035..88037 +
Ggra620.t1.CDS2Ggra620.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000895_pilon 88168..88334 +
Ggra620.t1.CDS3Ggra620.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000895_pilon 88408..88723 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra620.t1.exon1Ggra620.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 88035..88037 +
Ggra620.t1.exon2Ggra620.t1.exon2Gracilaria gracilis GNS1m maleexontig00000895_pilon 88168..88334 +
Ggra620.t1.exon3Ggra620.t1.exon3Gracilaria gracilis GNS1m maleexontig00000895_pilon 88408..88723 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra620.t1.start1Ggra620.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 88035..88037 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra620.t1.intron1Ggra620.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000895_pilon 88038..88167 +
Ggra620.t1.intron2Ggra620.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000895_pilon 88335..88407 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra620.t1.stop1Ggra620.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 88721..88723 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra620.t1 ID=Ggra620.t1|Name=Ggra620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MSGDDRERFNLCQTTASDNSRLMTRCLPSETPAYKYADLRNIESSHWCFQ
CLQNNSVTDSSWSGSEGNLSSWSLEQQTGNPSAGQLIADVFRFVGYHHPF
ADALALLLQEEQMCNHFGDEIESAHLTGDCSGNRSEEDESEDIFTDDTMS
VGSRERSWLRW*
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spliced messenger RNA

>Ggra620.t1 ID=Ggra620.t1|Name=Ggra620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000895_pilon:88035..88723+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGAGATGATAGAGAACGATTCAATTTGTGTCAGACTACTGCGTC
CGATAATTCAAGGCTAATGACGCGCTGCTTGCCGAGCGAAACTCCAGCCT
ATAAATATGCTGACTTGCGGAACATCGAAAGCTCTCACTGGTGTTTTCAA
TGCTTGCAAAATAACTCTGTTACGGATTCTTCATGGTCTGGCAGTGAGGG
TAACCTCTCTAGTTGGTCGTTGGAACAACAAACTGGAAACCCGTCAGCAG
GGCAGCTCATTGCAGATGTGTTCCGTTTTGTCGGCTATCACCACCCCTTT
GCTGATGCACTTGCACTTTTGCTGCAGGAAGAGCAAATGTGCAACCATTT
TGGCGACGAAATAGAATCAGCCCACTTAACCGGCGATTGCAGCGGCAATC
GCTCCGAGGAGGATGAAAGCGAAGACATCTTCACAGACGATACCATGTCA
GTAGGGTCAAGGGAAAGGTCGTGGTTGAGATGGTAA
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protein sequence of Ggra620.t1

>Ggra620.t1 ID=Ggra620.t1|Name=Ggra620.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MSGDDRERFNLCQTTASDNSRLMTRCLPSETPAYKYADLRNIESSHWCFQ
CLQNNSVTDSSWSGSEGNLSSWSLEQQTGNPSAGQLIADVFRFVGYHHPF
ADALALLLQEEQMCNHFGDEIESAHLTGDCSGNRSEEDESEDIFTDDTMS
VGSRERSWLRW*
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mRNA from alignment at tig00000895_pilon:88035..88723+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra620.t1 ID=Ggra620.t1|Name=Ggra620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=689bp|location=Sequence derived from alignment at tig00000895_pilon:88035..88723+ (Gracilaria gracilis GNS1m male)
ATGGTACGTCTGATATCTACGGCGGCTATTTGGATGTCAACGCAAACACT
AAGATTCAAGGGCACGTGGAACCTCTCGACACCAAGCCCGTCACACAGAC
TGACATGCAATGGAGCGATTGTCACCTAATTAGAGCGGAGATGATAGAGA
ACGATTCAATTTGTGTCAGACTACTGCGTCCGATAATTCAAGGCTAATGA
CGCGCTGCTTGCCGAGCGAAACTCCAGCCTATAAATATGCTGACTTGCGG
AACATCGAAAGCTCTCACTGGTGTTTTCAATGCTTGCAAAATAACTCTGT
GTATGTTCTCCCAATATACCTTCTAACTGCTTTCACACGGAAGTGAAATG
GAACCGGCCTGTCCAAGCAGCAGTACGGATTCTTCATGGTCTGGCAGTGA
GGGTAACCTCTCTAGTTGGTCGTTGGAACAACAAACTGGAAACCCGTCAG
CAGGGCAGCTCATTGCAGATGTGTTCCGTTTTGTCGGCTATCACCACCCC
TTTGCTGATGCACTTGCACTTTTGCTGCAGGAAGAGCAAATGTGCAACCA
TTTTGGCGACGAAATAGAATCAGCCCACTTAACCGGCGATTGCAGCGGCA
ATCGCTCCGAGGAGGATGAAAGCGAAGACATCTTCACAGACGATACCATG
TCAGTAGGGTCAAGGGAAAGGTCGTGGTTGAGATGGTAA
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Coding sequence (CDS) from alignment at tig00000895_pilon:88035..88723+

>Ggra620.t1 ID=Ggra620.t1|Name=Ggra620.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000895_pilon:88035..88723+ (Gracilaria gracilis GNS1m male)
ATGAGCGGAGATGATAGAGAACGATTCAATTTGTGTCAGACTACTGCGTC
CGATAATTCAAGGCTAATGACGCGCTGCTTGCCGAGCGAAACTCCAGCCT
ATAAATATGCTGACTTGCGGAACATCGAAAGCTCTCACTGGTGTTTTCAA
TGCTTGCAAAATAACTCTGTTACGGATTCTTCATGGTCTGGCAGTGAGGG
TAACCTCTCTAGTTGGTCGTTGGAACAACAAACTGGAAACCCGTCAGCAG
GGCAGCTCATTGCAGATGTGTTCCGTTTTGTCGGCTATCACCACCCCTTT
GCTGATGCACTTGCACTTTTGCTGCAGGAAGAGCAAATGTGCAACCATTT
TGGCGACGAAATAGAATCAGCCCACTTAACCGGCGATTGCAGCGGCAATC
GCTCCGAGGAGGATGAAAGCGAAGACATCTTCACAGACGATACCATGTCA
GTAGGGTCAAGGGAAAGGTCGTGGTTGAGATGGTAA
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