Ggra6193.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6193.t1
Unique NameGgra6193.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length593
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:937006..938921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5059.CADAFLAP00005321
PFAMszf-MYND
Max annot lvl4751|Fungi
KEGG koko:K17656
Evalue5.68e-07
EggNOG OGs2AZB7@1|root,2S05G@2759|Eukaryota,3A1XH@33154|Opisthokonta,3P39F@4751|Fungi,3QVFU@4890|Ascomycota,20HYV@147545|Eurotiomycetes,3S8ZJ@5042|Eurotiales
DescriptionMYND domain protein
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6193Ggra6193Gracilaria gracilis GNS1m malegenetig00000045_pilon 937006..938921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6193.t1Ggra6193.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 937006..938921 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6193.t1.stop1Ggra6193.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 937006..937008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6193.t1.CDS1Ggra6193.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 937006..938542 -
Ggra6193.t1.CDS2Ggra6193.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 938680..938921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6193.t1.exon1Ggra6193.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 937006..938542 -
Ggra6193.t1.exon2Ggra6193.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 938680..938921 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6193.t1.intron1Ggra6193.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 938543..938679 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6193.t1.start1Ggra6193.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 938919..938921 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6193.t1 ID=Ggra6193.t1|Name=Ggra6193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp
MSIVPCYQLAVGREHLFTTHYTYVAVPDNVPPPEMTRLMLRDDAPMPTPR
FTGNVLALEQLQQRIQQQPHDIIVERRTSTYRFNIHPGASGARERLDAVY
NHSFVIYPCPEQCGEDAFEVRFGSPKSHRLSYERFPDWGEKELDCYIERA
VVLGHAHRLTTERLAEEDPLAFWAFLLRYRTYFPRLARASADQKWKKELM
LEVRAANRLGTGEFDEHGIMHTGRAIPAFKTWLDVLTTDNRQDHAETGFV
AAMSIAMKMGKNMPGSAVEREGAGIIMEMSENMRNSNIARAVCLAQQNGE
MMRDAGGDVDARRRAETLFSEKFGELFGEDMSEAREEGHLKLVGQCQLCS
NCGKREQQPRLLLRCGRCRVAWYCDRTCQRGDWAAHKKVCGKNPNIRPEP
SAVRAVVFPGDPAVKPYATWIRGRTYDDHRRYVANSVLKCEVNDIKRTAA
ALGVVQRGGDEDGKIVMLHAGSGRVNARACAVAERATLPSLQMTTFSIGR
LAKVRGNAVLVKVRRGSRSCHQQSMGDFSMQNYLDRWGVFSYLAPEDEDG
TSGDGGAHGDRKSFGFAVPIQTSPERVAGVMTVMRDAMRTMQ*
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spliced messenger RNA

>Ggra6193.t1 ID=Ggra6193.t1|Name=Ggra6193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000045_pilon:937006..938921- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATTGTCCCTTGCTACCAGCTGGCCGTCGGTCGCGAACACCTCTT
CACCACCCACTACACCTATGTCGCTGTGCCTGACAATGTCCCGCCCCCCG
AAATGACGCGCCTCATGCTTCGCGATGATGCGCCCATGCCGACGCCGCGC
TTCACTGGCAATGTGCTGGCGCTGGAGCAGTTGCAGCAGCGTATTCAACA
GCAGCCGCACGACATCATTGTCGAACGCAGGACCTCAACGTACAGGTTCA
ACATTCACCCAGGCGCGTCGGGCGCGCGTGAGCGCCTTGATGCAGTGTAC
AACCACTCCTTCGTGATCTACCCATGCCCGGAACAGTGTGGCGAGGATGC
GTTCGAAGTGCGCTTTGGATCACCAAAGTCGCACCGTCTTTCGTACGAGC
GCTTCCCGGACTGGGGTGAGAAGGAGCTGGACTGCTACATCGAGCGCGCA
GTGGTATTAGGCCACGCGCACCGTCTCACCACTGAACGGCTGGCGGAAGA
AGACCCGTTAGCTTTCTGGGCATTCTTGTTGCGCTATCGTACATACTTCC
CGCGCCTCGCGCGTGCATCGGCCGACCAGAAGTGGAAGAAGGAGCTCATG
TTGGAAGTGCGTGCGGCGAACCGGCTGGGGACAGGTGAGTTCGACGAGCA
TGGCATAATGCACACGGGGCGCGCGATCCCTGCTTTCAAGACCTGGCTGG
ACGTGCTCACAACCGACAATAGGCAGGACCATGCTGAGACTGGGTTCGTC
GCCGCAATGAGCATTGCCATGAAGATGGGGAAGAACATGCCTGGGTCGGC
AGTAGAACGGGAAGGGGCCGGCATCATCATGGAAATGAGCGAGAACATGC
GCAACTCAAACATCGCTCGCGCGGTCTGTCTGGCGCAGCAGAACGGTGAG
ATGATGCGCGATGCAGGGGGCGACGTGGACGCGCGGCGACGCGCCGAGAC
ATTGTTCTCAGAAAAGTTCGGCGAGCTATTTGGCGAGGACATGAGCGAAG
CGCGTGAAGAGGGCCACTTGAAGTTGGTTGGCCAGTGCCAACTGTGCTCA
AACTGTGGTAAGCGCGAACAACAGCCGAGGTTATTGCTCCGCTGCGGCCG
ATGCAGGGTGGCCTGGTACTGCGACCGAACGTGTCAGCGCGGCGATTGGG
CTGCGCACAAAAAAGTGTGTGGGAAGAATCCAAACATCCGTCCAGAGCCG
TCGGCCGTGCGTGCCGTCGTGTTCCCGGGCGATCCCGCCGTCAAGCCGTA
TGCGACATGGATCCGCGGACGGACTTATGATGACCACCGACGGTATGTCG
CAAACAGTGTATTGAAGTGCGAGGTAAACGACATAAAACGCACAGCGGCG
GCGCTCGGCGTCGTGCAGAGGGGTGGGGACGAGGATGGGAAGATTGTGAT
GCTGCATGCAGGTAGCGGACGGGTGAATGCGCGAGCGTGCGCCGTTGCAG
AACGAGCGACGCTGCCTTCGTTACAGATGACCACGTTCAGTATCGGACGC
TTGGCAAAGGTGCGCGGCAATGCCGTGCTGGTGAAAGTGCGACGCGGGAG
TAGGAGTTGTCACCAACAGAGCATGGGCGACTTCTCCATGCAGAACTACC
TCGACCGATGGGGGGTGTTCTCCTACTTGGCCCCCGAAGACGAAGACGGA
ACGTCCGGCGACGGAGGGGCGCATGGTGATAGGAAATCCTTCGGGTTTGC
TGTACCGATTCAAACGAGCCCGGAGCGAGTTGCTGGAGTGATGACGGTAA
TGCGCGATGCGATGCGGACGATGCAATGA
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protein sequence of Ggra6193.t1

>Ggra6193.t1 ID=Ggra6193.t1|Name=Ggra6193.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=593bp
MSIVPCYQLAVGREHLFTTHYTYVAVPDNVPPPEMTRLMLRDDAPMPTPR
FTGNVLALEQLQQRIQQQPHDIIVERRTSTYRFNIHPGASGARERLDAVY
NHSFVIYPCPEQCGEDAFEVRFGSPKSHRLSYERFPDWGEKELDCYIERA
VVLGHAHRLTTERLAEEDPLAFWAFLLRYRTYFPRLARASADQKWKKELM
LEVRAANRLGTGEFDEHGIMHTGRAIPAFKTWLDVLTTDNRQDHAETGFV
AAMSIAMKMGKNMPGSAVEREGAGIIMEMSENMRNSNIARAVCLAQQNGE
MMRDAGGDVDARRRAETLFSEKFGELFGEDMSEAREEGHLKLVGQCQLCS
NCGKREQQPRLLLRCGRCRVAWYCDRTCQRGDWAAHKKVCGKNPNIRPEP
SAVRAVVFPGDPAVKPYATWIRGRTYDDHRRYVANSVLKCEVNDIKRTAA
ALGVVQRGGDEDGKIVMLHAGSGRVNARACAVAERATLPSLQMTTFSIGR
LAKVRGNAVLVKVRRGSRSCHQQSMGDFSMQNYLDRWGVFSYLAPEDEDG
TSGDGGAHGDRKSFGFAVPIQTSPERVAGVMTVMRDAMRTMQ*
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mRNA from alignment at tig00000045_pilon:937006..938921-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6193.t1 ID=Ggra6193.t1|Name=Ggra6193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1916bp|location=Sequence derived from alignment at tig00000045_pilon:937006..938921- (Gracilaria gracilis GNS1m male)
ATGTCCATTGTCCCTTGCTACCAGCTGGCCGTCGGTCGCGAACACCTCTT
CACCACCCACTACACCTATGTCGCTGTGCCTGACAATGTCCCGCCCCCCG
AAATGACGCGCCTCATGCTTCGCGATGATGCGCCCATGCCGACGCCGCGC
TTCACTGGCAATGTGCTGGCGCTGGAGCAGTTGCAGCAGCGTATTCAACA
GCAGCCGCACGACATCATTGTCGAACGCAGGACCTCAACGTAGTGAATGC
ATTCACTCACACCAGTCGCGATACAATACAAATCCCACAGCATGATCCAC
ACCTTCGCAAGCTCTTTCGTCTGCTTGAAAACCCCGTTGTGCAGCGCCAT
TTTCTCGTTCGTCCCATGCAGCCATTCAGCAGGTTCAACATTCACCCAGG
CGCGTCGGGCGCGCGTGAGCGCCTTGATGCAGTGTACAACCACTCCTTCG
TGATCTACCCATGCCCGGAACAGTGTGGCGAGGATGCGTTCGAAGTGCGC
TTTGGATCACCAAAGTCGCACCGTCTTTCGTACGAGCGCTTCCCGGACTG
GGGTGAGAAGGAGCTGGACTGCTACATCGAGCGCGCAGTGGTATTAGGCC
ACGCGCACCGTCTCACCACTGAACGGCTGGCGGAAGAAGACCCGTTAGCT
TTCTGGGCATTCTTGTTGCGCTATCGTACATACTTCCCGCGCCTCGCGCG
TGCATCGGCCGACCAGAAGTGGAAGAAGGAGCTCATGTTGGAAGTGCGTG
CGGCGAACCGGCTGGGGACAGGTGAGTTCGACGAGCATGGCATAATGCAC
ACGGGGCGCGCGATCCCTGCTTTCAAGACCTGGCTGGACGTGCTCACAAC
CGACAATAGGCAGGACCATGCTGAGACTGGGTTCGTCGCCGCAATGAGCA
TTGCCATGAAGATGGGGAAGAACATGCCTGGGTCGGCAGTAGAACGGGAA
GGGGCCGGCATCATCATGGAAATGAGCGAGAACATGCGCAACTCAAACAT
CGCTCGCGCGGTCTGTCTGGCGCAGCAGAACGGTGAGATGATGCGCGATG
CAGGGGGCGACGTGGACGCGCGGCGACGCGCCGAGACATTGTTCTCAGAA
AAGTTCGGCGAGCTATTTGGCGAGGACATGAGCGAAGCGCGTGAAGAGGG
CCACTTGAAGTTGGTTGGCCAGTGCCAACTGTGCTCAAACTGTGGTAAGC
GCGAACAACAGCCGAGGTTATTGCTCCGCTGCGGCCGATGCAGGGTGGCC
TGGTACTGCGACCGAACGTGTCAGCGCGGCGATTGGGCTGCGCACAAAAA
AGTGTGTGGGAAGAATCCAAACATCCGTCCAGAGCCGTCGGCCGTGCGTG
CCGTCGTGTTCCCGGGCGATCCCGCCGTCAAGCCGTATGCGACATGGATC
CGCGGACGGACTTATGATGACCACCGACGGTATGTCGCAAACAGTGTATT
GAAGTGCGAGGTAAACGACATAAAACGCACAGCGGCGGCGCTCGGCGTCG
TGCAGAGGGGTGGGGACGAGGATGGGAAGATTGTGATGCTGCATGCAGGT
AGCGGACGGGTGAATGCGCGAGCGTGCGCCGTTGCAGAACGAGCGACGCT
GCCTTCGTTACAGATGACCACGTTCAGTATCGGACGCTTGGCAAAGGTGC
GCGGCAATGCCGTGCTGGTGAAAGTGCGACGCGGGAGTAGGAGTTGTCAC
CAACAGAGCATGGGCGACTTCTCCATGCAGAACTACCTCGACCGATGGGG
GGTGTTCTCCTACTTGGCCCCCGAAGACGAAGACGGAACGTCCGGCGACG
GAGGGGCGCATGGTGATAGGAAATCCTTCGGGTTTGCTGTACCGATTCAA
ACGAGCCCGGAGCGAGTTGCTGGAGTGATGACGGTAATGCGCGATGCGAT
GCGGACGATGCAATGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:937006..938921-

>Ggra6193.t1 ID=Ggra6193.t1|Name=Ggra6193.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1779bp|location=Sequence derived from alignment at tig00000045_pilon:937006..938921- (Gracilaria gracilis GNS1m male)
ATGTCCATTGTCCCTTGCTACCAGCTGGCCGTCGGTCGCGAACACCTCTT
CACCACCCACTACACCTATGTCGCTGTGCCTGACAATGTCCCGCCCCCCG
AAATGACGCGCCTCATGCTTCGCGATGATGCGCCCATGCCGACGCCGCGC
TTCACTGGCAATGTGCTGGCGCTGGAGCAGTTGCAGCAGCGTATTCAACA
GCAGCCGCACGACATCATTGTCGAACGCAGGACCTCAACGTACAGGTTCA
ACATTCACCCAGGCGCGTCGGGCGCGCGTGAGCGCCTTGATGCAGTGTAC
AACCACTCCTTCGTGATCTACCCATGCCCGGAACAGTGTGGCGAGGATGC
GTTCGAAGTGCGCTTTGGATCACCAAAGTCGCACCGTCTTTCGTACGAGC
GCTTCCCGGACTGGGGTGAGAAGGAGCTGGACTGCTACATCGAGCGCGCA
GTGGTATTAGGCCACGCGCACCGTCTCACCACTGAACGGCTGGCGGAAGA
AGACCCGTTAGCTTTCTGGGCATTCTTGTTGCGCTATCGTACATACTTCC
CGCGCCTCGCGCGTGCATCGGCCGACCAGAAGTGGAAGAAGGAGCTCATG
TTGGAAGTGCGTGCGGCGAACCGGCTGGGGACAGGTGAGTTCGACGAGCA
TGGCATAATGCACACGGGGCGCGCGATCCCTGCTTTCAAGACCTGGCTGG
ACGTGCTCACAACCGACAATAGGCAGGACCATGCTGAGACTGGGTTCGTC
GCCGCAATGAGCATTGCCATGAAGATGGGGAAGAACATGCCTGGGTCGGC
AGTAGAACGGGAAGGGGCCGGCATCATCATGGAAATGAGCGAGAACATGC
GCAACTCAAACATCGCTCGCGCGGTCTGTCTGGCGCAGCAGAACGGTGAG
ATGATGCGCGATGCAGGGGGCGACGTGGACGCGCGGCGACGCGCCGAGAC
ATTGTTCTCAGAAAAGTTCGGCGAGCTATTTGGCGAGGACATGAGCGAAG
CGCGTGAAGAGGGCCACTTGAAGTTGGTTGGCCAGTGCCAACTGTGCTCA
AACTGTGGTAAGCGCGAACAACAGCCGAGGTTATTGCTCCGCTGCGGCCG
ATGCAGGGTGGCCTGGTACTGCGACCGAACGTGTCAGCGCGGCGATTGGG
CTGCGCACAAAAAAGTGTGTGGGAAGAATCCAAACATCCGTCCAGAGCCG
TCGGCCGTGCGTGCCGTCGTGTTCCCGGGCGATCCCGCCGTCAAGCCGTA
TGCGACATGGATCCGCGGACGGACTTATGATGACCACCGACGGTATGTCG
CAAACAGTGTATTGAAGTGCGAGGTAAACGACATAAAACGCACAGCGGCG
GCGCTCGGCGTCGTGCAGAGGGGTGGGGACGAGGATGGGAAGATTGTGAT
GCTGCATGCAGGTAGCGGACGGGTGAATGCGCGAGCGTGCGCCGTTGCAG
AACGAGCGACGCTGCCTTCGTTACAGATGACCACGTTCAGTATCGGACGC
TTGGCAAAGGTGCGCGGCAATGCCGTGCTGGTGAAAGTGCGACGCGGGAG
TAGGAGTTGTCACCAACAGAGCATGGGCGACTTCTCCATGCAGAACTACC
TCGACCGATGGGGGGTGTTCTCCTACTTGGCCCCCGAAGACGAAGACGGA
ACGTCCGGCGACGGAGGGGCGCATGGTGATAGGAAATCCTTCGGGTTTGC
TGTACCGATTCAAACGAGCCCGGAGCGAGTTGCTGGAGTGATGACGGTAA
TGCGCGATGCGATGCGGACGATGCAATGA
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