Ggra6192.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6192.t1
Unique Name	Ggra6192.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	740

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:933244..935463 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ11578
PFAMs	DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10899
GOs	GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016592,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363
Evalue	4.5e-121
EggNOG OGs	COG0514@1\|root,KOG0353@2759\|Eukaryota,37QA8@33090\|Viridiplantae,3GEUX@35493\|Streptophyta
EC	3.6.4.12
Description	Belongs to the helicase family. RecQ subfamily
COG category	L
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6192	Ggra6192	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 933244..935463 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6192.t1.start1	Ggra6192.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 933244..933246 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6192.t1.CDS1	Ggra6192.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 933244..935463 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6192.t1.exon1	Ggra6192.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 933244..935463 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6192.t1.stop1	Ggra6192.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 935461..935463 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6192.t1	Ggra6192.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 933244..935463 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:933244..935463+
coding sequence from alignment at tig00000045_pilon:933244..935463+

mRNA sequence

>Ggra6192.t1 ID=Ggra6192.t1|Name=Ggra6192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=740bp
MATDALPQRDELARELGDSVREKREQVSEAQRRLSELCAQLADAQRALSE
RLKLLRERADAAFDWLHACAWDARLQHALSDVFALSSFRPLQREALNATL
MARDVFAILPTGAGKSLIYQLAAVVDGGLTLVVSPLISLSMDQRSALEHR
SIRAQCLHSELSKKRQKAIYDSFLPSHAFNKTSNHPRANNTHSSEWINDD
VPPMVLFVTPEQVARSKRLLSRLEKLHEKGHLSRICVDEAHCCSSWGHDF
RLEYRKLGILRRQCPSTPIIALSATCDSRTVEDVTSVLEMQHPVIFRGGV
NRPNLFYEVRPKADTDAAVIVDIATWVSTEFKNQCGIIYVLSRKDAEKYA
AALAEHGIDAACYHGDLDFSVRTQVHTQWSSGQLNIVVATIAFGLGIDHP
HVRFIIHATMASSLEAYYQESGRAGRDGLPSKCIVLHKPRDFARMSAFVG
DKGPVRLQKMYEMYKYACSRGLGSGNLCRRELIVNSFGEKMPERSAEQCK
SCCDLCEARLGLMVPTLQSVDVTDLAKDLFKMIREFALLYPGKKTTILQI
ANDWGKSTKRSGERAKRGQKTASSAINVNTRVAIINELVLCGALKEFHRH
SSYAVNAYVTIGEEDVITNLDRIEIALWKENEARASLFAAKVRRTEMKEA
KAESSHVDDCEVILIEDSDEEQQDQNQDLKSERTVVESVKTEAKTEIFKH
DGSPSDIETNPNPPCDSPFAAEAKQLNSPPKKKQRRTLV*

spliced messenger RNA

>Ggra6192.t1 ID=Ggra6192.t1|Name=Ggra6192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2220bp|location=Sequence derived from alignment at tig00000045_pilon:933244..935463+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACTGACGCGCTGCCGCAGCGCGACgagctggcgcgtgagctggg
cgacagcgtgcgcgagaagcgcgagcaggtgagcgaagcgcagcggcggc
tgagcgAGCTATGCGCGCAGCTGGCCGACGCGCAGCGCGCGCTGTCGGAG
CGCCTCAAGCTGCTGCGTGAGCGCGCCGACGCCGCCTTCGATTGGCTGCA
CGCCTGCGCCTGGGACGCGCGTCTGCAGCACGCGCTCTCCGACGTGTTTG
CGCTTTCTTCCTTCCGCCCGCTGCAGCGCGAGGCGCTCAACGCCACGCTC
ATGGCGCGCGATGTGTTCGCCATTTTGCCCACTGGCGCGGGCAAGAGCCT
TATTTATCAGCTGGCCGCTGTCGTTGATGGCGGCCTCACGCTGGTTGTCT
CCCCCCTCATATCGCTGTCAATGGACCAGCGCTCCGCCCTTGAGCACCGC
AGCATTCGCGCACAATGCTTGCATTCCGAGTTGAGCAAGAAGCGCCAAAA
GGCCATATACGACTCCTTCCTGCCGTCGCATGCGTTCAACAAAACCTCCA
ACCACCCGCGCGCCAACAACACACACTCTTCGGAATGGATTAACGACGAC
GTGCCCCCCATGGTCTTGTTCGTCACACCGGAACAGGTAGCTCGCTCCAA
GCGCCTCTTGTCGCGCCTAGAAAAGCTGCATGAGAAGGGACACTTGTCTC
GCATTTGTGTTGATGAAGCACACTGCTGTTCCTCCTGGGGACATGATTTT
CGACTCGAGTATAGAAAGCTAGGCATCCTGAGAAGGCAATGCCCGTCCAC
CCCGATAATTGCGCTCTCTGCCACATGTGACTCGCGAACTGTGGAAGACG
TAACTTCCGTCCTTGAAATGCAACATCCCGTCATATTTCGCGGCGGCGTC
AACAGACCCAACCTCTTCTACGAAGTCCGCCCCAAAGCCGACACTGACGC
AGCCGTTATCGTAGATATCGCCACGTGGGTCAGCACAGAGTTCAAAAACC
AATGTGGCATCATCTATGTGCTATCGAGGAAAGATGCTGAAAAGTATGCC
GCAGCACTTGCTGAGCATGGCATCGACGCTGCTTGCTATCATGGCGATTT
GGACTTCTCTGTGCGCACACAAGTGCACACTCAGTGGAGCAGTGGCCAGT
TGAACATTGTCGTGGCTACCATAGCGTTTGGCCTTGGAATTGATCATCCA
CATGTACGCTTTATAATTCACGCCACTATGGCTTCTAGTCTAGAAGCCTA
CTATCAAGAAAGTGGTCGCGCAGGACGTGATGGTCTTCCTTCAAAATGCA
TTGTGCTTCATAAACCGAGGGACTTTGCAAGAATGAGTGCGTTTGTTGGT
GACAAGGGGCCAGTCCGTCTTCAAAAGATGTATGAAATGTACAAGTATGC
TTGCTCAAGGGGCTTGGGTAGCGGCAATCTGTGCAGACGGGAGCTCATCG
TCAATTCCTTTGGAGAGAAGATGCCAGAACGCTCTGCAGAACAATGTAAG
AGCTGCTGTGACTTGTGCGAAGCGAGACTAGGGCTGATGGTGCCAACGCT
GCAGTCCGTGGATGTGACAGATCTTGCGAAGGATCTCTTCAAGATGATCC
GAGAATTCGCCCTTCTCTATCCTGGCAAGAAGACTACCATCCTTCAGATT
GCAAATGATTGGGGTAAGTCGACCAAGAGATCCGGAGAAAGGGCCAAACG
CGGACAGAAAACAGCTTCGAGTGCGATCAACGTGAATACACGGGTGGCAA
TTATTAATGAGCTCGTGCTGTGTGGTGCATTGAAAGAATTTCACAGACAC
TCAAGCTATGCCGTGAACGCGTATGTGACTATCGGAGAGGAGGATGTCAT
AACGAATCTGGATCGAATTGAAATAGCTCTGTGGAAGGAGAACGAGGCTC
GTGCTTCACTGTTTGCGGCAAAGGTGCGGAGAACCGAAATGAAGGAAGCG
AAGGCAGAGTCTTCCCATGTTGATGATTGTGAGGTTATCTTgatcgaaga
tagtgatgaagagcaacaagatcaaaatcaagatcTAAAGAGCGAACGTA
CGGTAGTTGAAAGCGTGAAAACTGAAGCAAAGACTGAGATATTCAAACAT
GATGGCTCTCCCTCAGACATTGAAACTAATCCAAACCCGCCTTGCGACTC
TCCTTTTGCTGCTGAGGCCAAACAGTTAAATTCACCGCCAAAGAAAAAGC
AAAGAAGAACGCTTGTATAG

protein sequence of Ggra6192.t1

>Ggra6192.t1 ID=Ggra6192.t1|Name=Ggra6192.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=740bp
MATDALPQRDELARELGDSVREKREQVSEAQRRLSELCAQLADAQRALSE
RLKLLRERADAAFDWLHACAWDARLQHALSDVFALSSFRPLQREALNATL
MARDVFAILPTGAGKSLIYQLAAVVDGGLTLVVSPLISLSMDQRSALEHR
SIRAQCLHSELSKKRQKAIYDSFLPSHAFNKTSNHPRANNTHSSEWINDD
VPPMVLFVTPEQVARSKRLLSRLEKLHEKGHLSRICVDEAHCCSSWGHDF
RLEYRKLGILRRQCPSTPIIALSATCDSRTVEDVTSVLEMQHPVIFRGGV
NRPNLFYEVRPKADTDAAVIVDIATWVSTEFKNQCGIIYVLSRKDAEKYA
AALAEHGIDAACYHGDLDFSVRTQVHTQWSSGQLNIVVATIAFGLGIDHP
HVRFIIHATMASSLEAYYQESGRAGRDGLPSKCIVLHKPRDFARMSAFVG
DKGPVRLQKMYEMYKYACSRGLGSGNLCRRELIVNSFGEKMPERSAEQCK
SCCDLCEARLGLMVPTLQSVDVTDLAKDLFKMIREFALLYPGKKTTILQI
ANDWGKSTKRSGERAKRGQKTASSAINVNTRVAIINELVLCGALKEFHRH
SSYAVNAYVTIGEEDVITNLDRIEIALWKENEARASLFAAKVRRTEMKEA
KAESSHVDDCEVILIEDSDEEQQDQNQDLKSERTVVESVKTEAKTEIFKH
DGSPSDIETNPNPPCDSPFAAEAKQLNSPPKKKQRRTLV*

mRNA from alignment at tig00000045_pilon:933244..935463+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6192.t1 ID=Ggra6192.t1|Name=Ggra6192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2220bp|location=Sequence derived from alignment at tig00000045_pilon:933244..935463+ (Gracilaria gracilis GNS1m male)
ATGGCTACTGACGCGCTGCCGCAGCGCGACgagctggcgcgtgagctggg
cgacagcgtgcgcgagaagcgcgagcaggtgagcgaagcgcagcggcggc
tgagcgAGCTATGCGCGCAGCTGGCCGACGCGCAGCGCGCGCTGTCGGAG
CGCCTCAAGCTGCTGCGTGAGCGCGCCGACGCCGCCTTCGATTGGCTGCA
CGCCTGCGCCTGGGACGCGCGTCTGCAGCACGCGCTCTCCGACGTGTTTG
CGCTTTCTTCCTTCCGCCCGCTGCAGCGCGAGGCGCTCAACGCCACGCTC
ATGGCGCGCGATGTGTTCGCCATTTTGCCCACTGGCGCGGGCAAGAGCCT
TATTTATCAGCTGGCCGCTGTCGTTGATGGCGGCCTCACGCTGGTTGTCT
CCCCCCTCATATCGCTGTCAATGGACCAGCGCTCCGCCCTTGAGCACCGC
AGCATTCGCGCACAATGCTTGCATTCCGAGTTGAGCAAGAAGCGCCAAAA
GGCCATATACGACTCCTTCCTGCCGTCGCATGCGTTCAACAAAACCTCCA
ACCACCCGCGCGCCAACAACACACACTCTTCGGAATGGATTAACGACGAC
GTGCCCCCCATGGTCTTGTTCGTCACACCGGAACAGGTAGCTCGCTCCAA
GCGCCTCTTGTCGCGCCTAGAAAAGCTGCATGAGAAGGGACACTTGTCTC
GCATTTGTGTTGATGAAGCACACTGCTGTTCCTCCTGGGGACATGATTTT
CGACTCGAGTATAGAAAGCTAGGCATCCTGAGAAGGCAATGCCCGTCCAC
CCCGATAATTGCGCTCTCTGCCACATGTGACTCGCGAACTGTGGAAGACG
TAACTTCCGTCCTTGAAATGCAACATCCCGTCATATTTCGCGGCGGCGTC
AACAGACCCAACCTCTTCTACGAAGTCCGCCCCAAAGCCGACACTGACGC
AGCCGTTATCGTAGATATCGCCACGTGGGTCAGCACAGAGTTCAAAAACC
AATGTGGCATCATCTATGTGCTATCGAGGAAAGATGCTGAAAAGTATGCC
GCAGCACTTGCTGAGCATGGCATCGACGCTGCTTGCTATCATGGCGATTT
GGACTTCTCTGTGCGCACACAAGTGCACACTCAGTGGAGCAGTGGCCAGT
TGAACATTGTCGTGGCTACCATAGCGTTTGGCCTTGGAATTGATCATCCA
CATGTACGCTTTATAATTCACGCCACTATGGCTTCTAGTCTAGAAGCCTA
CTATCAAGAAAGTGGTCGCGCAGGACGTGATGGTCTTCCTTCAAAATGCA
TTGTGCTTCATAAACCGAGGGACTTTGCAAGAATGAGTGCGTTTGTTGGT
GACAAGGGGCCAGTCCGTCTTCAAAAGATGTATGAAATGTACAAGTATGC
TTGCTCAAGGGGCTTGGGTAGCGGCAATCTGTGCAGACGGGAGCTCATCG
TCAATTCCTTTGGAGAGAAGATGCCAGAACGCTCTGCAGAACAATGTAAG
AGCTGCTGTGACTTGTGCGAAGCGAGACTAGGGCTGATGGTGCCAACGCT
GCAGTCCGTGGATGTGACAGATCTTGCGAAGGATCTCTTCAAGATGATCC
GAGAATTCGCCCTTCTCTATCCTGGCAAGAAGACTACCATCCTTCAGATT
GCAAATGATTGGGGTAAGTCGACCAAGAGATCCGGAGAAAGGGCCAAACG
CGGACAGAAAACAGCTTCGAGTGCGATCAACGTGAATACACGGGTGGCAA
TTATTAATGAGCTCGTGCTGTGTGGTGCATTGAAAGAATTTCACAGACAC
TCAAGCTATGCCGTGAACGCGTATGTGACTATCGGAGAGGAGGATGTCAT
AACGAATCTGGATCGAATTGAAATAGCTCTGTGGAAGGAGAACGAGGCTC
GTGCTTCACTGTTTGCGGCAAAGGTGCGGAGAACCGAAATGAAGGAAGCG
AAGGCAGAGTCTTCCCATGTTGATGATTGTGAGGTTATCTTgatcgaaga
tagtgatgaagagcaacaagatcaaaatcaagatcTAAAGAGCGAACGTA
CGGTAGTTGAAAGCGTGAAAACTGAAGCAAAGACTGAGATATTCAAACAT
GATGGCTCTCCCTCAGACATTGAAACTAATCCAAACCCGCCTTGCGACTC
TCCTTTTGCTGCTGAGGCCAAACAGTTAAATTCACCGCCAAAGAAAAAGC
AAAGAAGAACGCTTGTATAG

Coding sequence (CDS) from alignment at tig00000045_pilon:933244..935463+

>Ggra6192.t1 ID=Ggra6192.t1|Name=Ggra6192.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2220bp|location=Sequence derived from alignment at tig00000045_pilon:933244..935463+ (Gracilaria gracilis GNS1m male)
ATGGCTACTGACGCGCTGCCGCAGCGCGACgagctggcgcgtgagctggg
cgacagcgtgcgcgagaagcgcgagcaggtgagcgaagcgcagcggcggc
tgagcgAGCTATGCGCGCAGCTGGCCGACGCGCAGCGCGCGCTGTCGGAG
CGCCTCAAGCTGCTGCGTGAGCGCGCCGACGCCGCCTTCGATTGGCTGCA
CGCCTGCGCCTGGGACGCGCGTCTGCAGCACGCGCTCTCCGACGTGTTTG
CGCTTTCTTCCTTCCGCCCGCTGCAGCGCGAGGCGCTCAACGCCACGCTC
ATGGCGCGCGATGTGTTCGCCATTTTGCCCACTGGCGCGGGCAAGAGCCT
TATTTATCAGCTGGCCGCTGTCGTTGATGGCGGCCTCACGCTGGTTGTCT
CCCCCCTCATATCGCTGTCAATGGACCAGCGCTCCGCCCTTGAGCACCGC
AGCATTCGCGCACAATGCTTGCATTCCGAGTTGAGCAAGAAGCGCCAAAA
GGCCATATACGACTCCTTCCTGCCGTCGCATGCGTTCAACAAAACCTCCA
ACCACCCGCGCGCCAACAACACACACTCTTCGGAATGGATTAACGACGAC
GTGCCCCCCATGGTCTTGTTCGTCACACCGGAACAGGTAGCTCGCTCCAA
GCGCCTCTTGTCGCGCCTAGAAAAGCTGCATGAGAAGGGACACTTGTCTC
GCATTTGTGTTGATGAAGCACACTGCTGTTCCTCCTGGGGACATGATTTT
CGACTCGAGTATAGAAAGCTAGGCATCCTGAGAAGGCAATGCCCGTCCAC
CCCGATAATTGCGCTCTCTGCCACATGTGACTCGCGAACTGTGGAAGACG
TAACTTCCGTCCTTGAAATGCAACATCCCGTCATATTTCGCGGCGGCGTC
AACAGACCCAACCTCTTCTACGAAGTCCGCCCCAAAGCCGACACTGACGC
AGCCGTTATCGTAGATATCGCCACGTGGGTCAGCACAGAGTTCAAAAACC
AATGTGGCATCATCTATGTGCTATCGAGGAAAGATGCTGAAAAGTATGCC
GCAGCACTTGCTGAGCATGGCATCGACGCTGCTTGCTATCATGGCGATTT
GGACTTCTCTGTGCGCACACAAGTGCACACTCAGTGGAGCAGTGGCCAGT
TGAACATTGTCGTGGCTACCATAGCGTTTGGCCTTGGAATTGATCATCCA
CATGTACGCTTTATAATTCACGCCACTATGGCTTCTAGTCTAGAAGCCTA
CTATCAAGAAAGTGGTCGCGCAGGACGTGATGGTCTTCCTTCAAAATGCA
TTGTGCTTCATAAACCGAGGGACTTTGCAAGAATGAGTGCGTTTGTTGGT
GACAAGGGGCCAGTCCGTCTTCAAAAGATGTATGAAATGTACAAGTATGC
TTGCTCAAGGGGCTTGGGTAGCGGCAATCTGTGCAGACGGGAGCTCATCG
TCAATTCCTTTGGAGAGAAGATGCCAGAACGCTCTGCAGAACAATGTAAG
AGCTGCTGTGACTTGTGCGAAGCGAGACTAGGGCTGATGGTGCCAACGCT
GCAGTCCGTGGATGTGACAGATCTTGCGAAGGATCTCTTCAAGATGATCC
GAGAATTCGCCCTTCTCTATCCTGGCAAGAAGACTACCATCCTTCAGATT
GCAAATGATTGGGGTAAGTCGACCAAGAGATCCGGAGAAAGGGCCAAACG
CGGACAGAAAACAGCTTCGAGTGCGATCAACGTGAATACACGGGTGGCAA
TTATTAATGAGCTCGTGCTGTGTGGTGCATTGAAAGAATTTCACAGACAC
TCAAGCTATGCCGTGAACGCGTATGTGACTATCGGAGAGGAGGATGTCAT
AACGAATCTGGATCGAATTGAAATAGCTCTGTGGAAGGAGAACGAGGCTC
GTGCTTCACTGTTTGCGGCAAAGGTGCGGAGAACCGAAATGAAGGAAGCG
AAGGCAGAGTCTTCCCATGTTGATGATTGTGAGGTTATCTTgatcgaaga
tagtgatgaagagcaacaagatcaaaatcaagatcTAAAGAGCGAACGTA
CGGTAGTTGAAAGCGTGAAAACTGAAGCAAAGACTGAGATATTCAAACAT
GATGGCTCTCCCTCAGACATTGAAACTAATCCAAACCCGCCTTGCGACTC
TCCTTTTGCTGCTGAGGCCAAACAGTTAAATTCACCGCCAAAGAAAAAGC
AAAGAAGAACGCTTGTATAG