Ggra6189.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6189.t1
Unique Name	Ggra6189.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:927914..929059 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706917.1
PFAMs	PAD_porph
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00177
KEGG ko	ko:K10536
KEGG Reaction	R01416
KEGG Pathway	ko00330,ko01100,map00330,map01100
GOs	GO:0003674,GO:0003824,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0047632,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Evalue	2.67e-87
EggNOG OGs	COG2957@1\|root,2QUHM@2759\|Eukaryota
EC	3.5.3.12
Description	Porphyromonas-type peptidyl-arginine deiminase
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6189	Ggra6189	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 927914..929059 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6189.t1.start1	Ggra6189.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 927914..927916 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6189.t1.CDS1	Ggra6189.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 927914..929059 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6189.t1.exon1	Ggra6189.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 927914..929059 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6189.t1.stop1	Ggra6189.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 929057..929059 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6189.t1	Ggra6189.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 927914..929059 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:927914..929059+
coding sequence from alignment at tig00000045_pilon:927914..929059+

mRNA sequence

>Ggra6189.t1 ID=Ggra6189.t1|Name=Ggra6189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MKHQGFLISDWAQPHRILVGWPQRQDTWRQNGAPARDAIVRLINAILSNT
TNVQVSIVVGEGKQYKDIRELYSNKWPEACLKSDRISVEHVPMNDCWMRD
TGPLLIVDKNSSRHLLTGVCFRFNAWGGANGGCYVDYGKDDEVAFRLCSR
FEFEARHVNMILEGGSVSSDGQGTLLVTKECLLNPNRNPQLTQSDIEHTL
RTNLGARKVIWLPFGAAYDSDTDGHVDNMAIFIRRGHVLLLWADENVCPD
QHRRSELALQVLQNSTDAEGNSLFVHKVTAPPMLTRSKCEADGVQNVSAT
IAKERCEGEQLCASYVNVVITDEAVFAPAFGDEHADERARRELQASFTET
GQRIVMVSAREIVLGGGGLHCLTTTIPEYGQ*

spliced messenger RNA

>Ggra6189.t1 ID=Ggra6189.t1|Name=Ggra6189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000045_pilon:927914..929059+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCATCAGGGATTTTTGATATCAGACTGGGCCCAGCCTCACCGCAT
TCTGGTCGGATGGCCTCAGAGACAGGATACCTGGCGACAGAACGGTGCTC
CAGCTCGCGACGCCATAGTACGTTTAATAAACGCTATATTGTCAAACACT
ACCAATGTTCAAGTTTCTATCGTAGTTGGCGAAGGGAAGCAATACAAAGA
CATCCGCGAGCTATATAGCAACAAATGGCCTGAAGCATGCCTCAAGAGTG
ATCGCATATCTGTAGAGCATGTCCCCATGAACGACTGCTGGATGAGGGAC
ACCGGACCTCTATTGATCGTCGACAAAAATTCTTCGAGGCACCTTCTGAC
GGGAGTTTGCTTCAGATTTAATGCGTGGGGAGGCGCAAACGGTGGCTGTT
ATGTGGACTACGGCAAGGACGATGAAGTCGCTTTCCGTTTATGCTCCCGT
TTTGAATTTGAAGCGCGTCATGTGAACATGATACTAGAAGGTGGGTCAGT
GTCGTCAGATGGTCAAGGAACTCTCTTGGTAACCAAAGAATGTCTCCTAA
ACCCGAACCGAAATCCGCAGCTAACGCAAAGTGATATTGAACATACTCTG
CGCACAAACCTTGGAGCCAGAAAGGTTATATGGTTGCCTTTTGGAGCCGC
GTACGACTCCGACACGGATGGTCATGTAGACAACATGGCCATCTTCATCA
GACGGGGGCATGTACTATTGCTATGGGCGGATGAAAACGTATGCCCAGAT
CAGCATCGACGAAGCGAGCTTGCGCTCCAAGTGCTGCAAAATAGCACAGA
TGCAGAGGGGAACTCGCTTTTCGTTCACAAAGTGACAGCGCCACCAATGT
TGACAAGGTCAAAATGTGAGGCAGATGGCGTGCAGAATGTTTCAGCTACG
ATAGCAAAGGAACGCTGCGAAGGAGAGCAACTCTGTGCGAGTTATGTGAA
CGTGGTGATCACGGACGAAGCTGTGTTTGCTCCTGCTTTTGGTGACGAGC
ACGCTGATGAGAGGGCACGGAGAGAACTTCAGGCGTCGTTTACCGAAACG
GGCCAGAGGATTGTTATGGTGAGTGCGAGAGAGATTGTACTCGGTGGGGG
AGGCCTGCACTGCCTGACTACAACCATTCCCGAATATGGGCAATAA

protein sequence of Ggra6189.t1

>Ggra6189.t1 ID=Ggra6189.t1|Name=Ggra6189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MKHQGFLISDWAQPHRILVGWPQRQDTWRQNGAPARDAIVRLINAILSNT
TNVQVSIVVGEGKQYKDIRELYSNKWPEACLKSDRISVEHVPMNDCWMRD
TGPLLIVDKNSSRHLLTGVCFRFNAWGGANGGCYVDYGKDDEVAFRLCSR
FEFEARHVNMILEGGSVSSDGQGTLLVTKECLLNPNRNPQLTQSDIEHTL
RTNLGARKVIWLPFGAAYDSDTDGHVDNMAIFIRRGHVLLLWADENVCPD
QHRRSELALQVLQNSTDAEGNSLFVHKVTAPPMLTRSKCEADGVQNVSAT
IAKERCEGEQLCASYVNVVITDEAVFAPAFGDEHADERARRELQASFTET
GQRIVMVSAREIVLGGGGLHCLTTTIPEYGQ*

mRNA from alignment at tig00000045_pilon:927914..929059+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6189.t1 ID=Ggra6189.t1|Name=Ggra6189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000045_pilon:927914..929059+ (Gracilaria gracilis GNS1m male)
ATGAAGCATCAGGGATTTTTGATATCAGACTGGGCCCAGCCTCACCGCAT
TCTGGTCGGATGGCCTCAGAGACAGGATACCTGGCGACAGAACGGTGCTC
CAGCTCGCGACGCCATAGTACGTTTAATAAACGCTATATTGTCAAACACT
ACCAATGTTCAAGTTTCTATCGTAGTTGGCGAAGGGAAGCAATACAAAGA
CATCCGCGAGCTATATAGCAACAAATGGCCTGAAGCATGCCTCAAGAGTG
ATCGCATATCTGTAGAGCATGTCCCCATGAACGACTGCTGGATGAGGGAC
ACCGGACCTCTATTGATCGTCGACAAAAATTCTTCGAGGCACCTTCTGAC
GGGAGTTTGCTTCAGATTTAATGCGTGGGGAGGCGCAAACGGTGGCTGTT
ATGTGGACTACGGCAAGGACGATGAAGTCGCTTTCCGTTTATGCTCCCGT
TTTGAATTTGAAGCGCGTCATGTGAACATGATACTAGAAGGTGGGTCAGT
GTCGTCAGATGGTCAAGGAACTCTCTTGGTAACCAAAGAATGTCTCCTAA
ACCCGAACCGAAATCCGCAGCTAACGCAAAGTGATATTGAACATACTCTG
CGCACAAACCTTGGAGCCAGAAAGGTTATATGGTTGCCTTTTGGAGCCGC
GTACGACTCCGACACGGATGGTCATGTAGACAACATGGCCATCTTCATCA
GACGGGGGCATGTACTATTGCTATGGGCGGATGAAAACGTATGCCCAGAT
CAGCATCGACGAAGCGAGCTTGCGCTCCAAGTGCTGCAAAATAGCACAGA
TGCAGAGGGGAACTCGCTTTTCGTTCACAAAGTGACAGCGCCACCAATGT
TGACAAGGTCAAAATGTGAGGCAGATGGCGTGCAGAATGTTTCAGCTACG
ATAGCAAAGGAACGCTGCGAAGGAGAGCAACTCTGTGCGAGTTATGTGAA
CGTGGTGATCACGGACGAAGCTGTGTTTGCTCCTGCTTTTGGTGACGAGC
ACGCTGATGAGAGGGCACGGAGAGAACTTCAGGCGTCGTTTACCGAAACG
GGCCAGAGGATTGTTATGGTGAGTGCGAGAGAGATTGTACTCGGTGGGGG
AGGCCTGCACTGCCTGACTACAACCATTCCCGAATATGGGCAATAA

Coding sequence (CDS) from alignment at tig00000045_pilon:927914..929059+

>Ggra6189.t1 ID=Ggra6189.t1|Name=Ggra6189.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000045_pilon:927914..929059+ (Gracilaria gracilis GNS1m male)
ATGAAGCATCAGGGATTTTTGATATCAGACTGGGCCCAGCCTCACCGCAT
TCTGGTCGGATGGCCTCAGAGACAGGATACCTGGCGACAGAACGGTGCTC
CAGCTCGCGACGCCATAGTACGTTTAATAAACGCTATATTGTCAAACACT
ACCAATGTTCAAGTTTCTATCGTAGTTGGCGAAGGGAAGCAATACAAAGA
CATCCGCGAGCTATATAGCAACAAATGGCCTGAAGCATGCCTCAAGAGTG
ATCGCATATCTGTAGAGCATGTCCCCATGAACGACTGCTGGATGAGGGAC
ACCGGACCTCTATTGATCGTCGACAAAAATTCTTCGAGGCACCTTCTGAC
GGGAGTTTGCTTCAGATTTAATGCGTGGGGAGGCGCAAACGGTGGCTGTT
ATGTGGACTACGGCAAGGACGATGAAGTCGCTTTCCGTTTATGCTCCCGT
TTTGAATTTGAAGCGCGTCATGTGAACATGATACTAGAAGGTGGGTCAGT
GTCGTCAGATGGTCAAGGAACTCTCTTGGTAACCAAAGAATGTCTCCTAA
ACCCGAACCGAAATCCGCAGCTAACGCAAAGTGATATTGAACATACTCTG
CGCACAAACCTTGGAGCCAGAAAGGTTATATGGTTGCCTTTTGGAGCCGC
GTACGACTCCGACACGGATGGTCATGTAGACAACATGGCCATCTTCATCA
GACGGGGGCATGTACTATTGCTATGGGCGGATGAAAACGTATGCCCAGAT
CAGCATCGACGAAGCGAGCTTGCGCTCCAAGTGCTGCAAAATAGCACAGA
TGCAGAGGGGAACTCGCTTTTCGTTCACAAAGTGACAGCGCCACCAATGT
TGACAAGGTCAAAATGTGAGGCAGATGGCGTGCAGAATGTTTCAGCTACG
ATAGCAAAGGAACGCTGCGAAGGAGAGCAACTCTGTGCGAGTTATGTGAA
CGTGGTGATCACGGACGAAGCTGTGTTTGCTCCTGCTTTTGGTGACGAGC
ACGCTGATGAGAGGGCACGGAGAGAACTTCAGGCGTCGTTTACCGAAACG
GGCCAGAGGATTGTTATGGTGAGTGCGAGAGAGATTGTACTCGGTGGGGG
AGGCCTGCACTGCCTGACTACAACCATTCCCGAATATGGGCAATAA