Ggra6187.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6187.t1
Unique Name	Ggra6187.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:924388..925368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703842.1
PFAMs	Glyco_transf_34
Max annot lvl	2759\|Eukaryota
Evalue	4.69e-107
EggNOG OGs	2EAHV@1\|root,2SGRN@2759\|Eukaryota
Description	galactosyl transferase GMA12/MNN10 family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6187	Ggra6187	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 924388..925368 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6187.t1.start1	Ggra6187.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 924388..924390 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6187.t1.CDS1	Ggra6187.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 924388..925368 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6187.t1.exon1	Ggra6187.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 924388..925368 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6187.t1.stop1	Ggra6187.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 925366..925368 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6187.t1	Ggra6187.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 924388..925368 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:924388..925368+
coding sequence from alignment at tig00000045_pilon:924388..925368+

mRNA sequence

>Ggra6187.t1 ID=Ggra6187.t1|Name=Ggra6187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MVNDVWFFRELAEITLRNKRRYATRHAFEIVVHTPYETAGLFTPADCTEP
SVTRRLSDGRCFKHAARFQLDDRAPTFGKIKLALDACVGRDDYWLLWTDA
DALIVNQSISLLDVVDDAYHVIVAHDWFMLNAGVMLFRCSPWNKQFLQRV
YDARQFDKARALDQSAFHDFFTNHPDVKPRVKHLPKHAINVYTEEYRPGD
FILHFAGKLYEATPWGITDIARQFDVLSRVDDQQKISYFFNTPYLLNYFS
GTCVMGPPDKDPKRDCDPLDPRRLKLPEPLIAMSYPNRYRQLQYRNPRMK
HWKDPYDVPGATDIKIRRTHPPSSSA*

spliced messenger RNA

>Ggra6187.t1 ID=Ggra6187.t1|Name=Ggra6187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000045_pilon:924388..925368+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgGTCAACGACGTGTGGTTTTTCCGCGAGCTTGCAGAGATCACCCTCCG
CAACAAGCGACGTTATGCCACGCGTCATGCCTTCGAGATCGTTGTTCACA
CCCCGTATGAGACCGCCGGCCTGTTTACACCCGCCGACTGTACGGAACCT
TCCGTCACCCGCCGCCTTTCCGACGGCCGCTGTTTCAAACACGCCGCCCG
CTTTCAATTAGATGATCGCGCGCCCACCTTCGGTAAGATCAAGCTTGCGC
TTGATGCGTGTGTTGGCCGTGATGATTACTGGTTGTTGTGGACTGATGCC
GACGCGCTCATAGTTAATCAATCCATCTCACTCTTGGACGTGGTTGACGA
CGCCTATCATGTCATTGTGGCTCACGACTGGTTCATGTTGAATGCAGGCG
TCATGCTGTTCCGATGCTCCCCATGGAACAAGCAATTCCTGCAGCGTGTT
TACGACGCGCGTCAATTCGACAAGGCGCGCGCGCTCGATCAGAGTGCCTT
TCATGATTTCTTCACCAACCACCCCGACGTCAAGCCGCGCGTCAAGCACC
TGCCCAAACATGCCATTAATGTTTACACCGAGGAGTACCGACCCGGCGAC
TTTATCTTGCACTTTGCGGGCAAGTTGTATGAAGCCACGCCGTGGGGCAT
CACCGACATTGCGCGACAATTTGACGTCCTTTCTCGCGTCGACGACCAGC
AAAAAATCAGCTACTTCTTTAACACTCCATACTTACTCAACTACTTCTCC
GGCACTTGTGTCATGGGTCCGCCGGACAAAGACCCCAAGCGCGACTGTGA
TCCGCTGGACCCGCGTCGACTCAAGCTCCCAGAGCCACTAATTGCCATGA
GCTATCCTAATCGTTACCGCCAACTGCAGTACAGAAACCCCAGAATGAAA
CACTGGAAGGATCCCTACGACGTGCCAGGAGCCACTGACATCAAGATCCG
ACGCACTCATCCTCCTTCTTCCTCCGCGTAA

protein sequence of Ggra6187.t1

>Ggra6187.t1 ID=Ggra6187.t1|Name=Ggra6187.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MVNDVWFFRELAEITLRNKRRYATRHAFEIVVHTPYETAGLFTPADCTEP
SVTRRLSDGRCFKHAARFQLDDRAPTFGKIKLALDACVGRDDYWLLWTDA
DALIVNQSISLLDVVDDAYHVIVAHDWFMLNAGVMLFRCSPWNKQFLQRV
YDARQFDKARALDQSAFHDFFTNHPDVKPRVKHLPKHAINVYTEEYRPGD
FILHFAGKLYEATPWGITDIARQFDVLSRVDDQQKISYFFNTPYLLNYFS
GTCVMGPPDKDPKRDCDPLDPRRLKLPEPLIAMSYPNRYRQLQYRNPRMK
HWKDPYDVPGATDIKIRRTHPPSSSA*

mRNA from alignment at tig00000045_pilon:924388..925368+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6187.t1 ID=Ggra6187.t1|Name=Ggra6187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000045_pilon:924388..925368+ (Gracilaria gracilis GNS1m male)
atgGTCAACGACGTGTGGTTTTTCCGCGAGCTTGCAGAGATCACCCTCCG
CAACAAGCGACGTTATGCCACGCGTCATGCCTTCGAGATCGTTGTTCACA
CCCCGTATGAGACCGCCGGCCTGTTTACACCCGCCGACTGTACGGAACCT
TCCGTCACCCGCCGCCTTTCCGACGGCCGCTGTTTCAAACACGCCGCCCG
CTTTCAATTAGATGATCGCGCGCCCACCTTCGGTAAGATCAAGCTTGCGC
TTGATGCGTGTGTTGGCCGTGATGATTACTGGTTGTTGTGGACTGATGCC
GACGCGCTCATAGTTAATCAATCCATCTCACTCTTGGACGTGGTTGACGA
CGCCTATCATGTCATTGTGGCTCACGACTGGTTCATGTTGAATGCAGGCG
TCATGCTGTTCCGATGCTCCCCATGGAACAAGCAATTCCTGCAGCGTGTT
TACGACGCGCGTCAATTCGACAAGGCGCGCGCGCTCGATCAGAGTGCCTT
TCATGATTTCTTCACCAACCACCCCGACGTCAAGCCGCGCGTCAAGCACC
TGCCCAAACATGCCATTAATGTTTACACCGAGGAGTACCGACCCGGCGAC
TTTATCTTGCACTTTGCGGGCAAGTTGTATGAAGCCACGCCGTGGGGCAT
CACCGACATTGCGCGACAATTTGACGTCCTTTCTCGCGTCGACGACCAGC
AAAAAATCAGCTACTTCTTTAACACTCCATACTTACTCAACTACTTCTCC
GGCACTTGTGTCATGGGTCCGCCGGACAAAGACCCCAAGCGCGACTGTGA
TCCGCTGGACCCGCGTCGACTCAAGCTCCCAGAGCCACTAATTGCCATGA
GCTATCCTAATCGTTACCGCCAACTGCAGTACAGAAACCCCAGAATGAAA
CACTGGAAGGATCCCTACGACGTGCCAGGAGCCACTGACATCAAGATCCG
ACGCACTCATCCTCCTTCTTCCTCCGCGTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:924388..925368+

>Ggra6187.t1 ID=Ggra6187.t1|Name=Ggra6187.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000045_pilon:924388..925368+ (Gracilaria gracilis GNS1m male)
atgGTCAACGACGTGTGGTTTTTCCGCGAGCTTGCAGAGATCACCCTCCG
CAACAAGCGACGTTATGCCACGCGTCATGCCTTCGAGATCGTTGTTCACA
CCCCGTATGAGACCGCCGGCCTGTTTACACCCGCCGACTGTACGGAACCT
TCCGTCACCCGCCGCCTTTCCGACGGCCGCTGTTTCAAACACGCCGCCCG
CTTTCAATTAGATGATCGCGCGCCCACCTTCGGTAAGATCAAGCTTGCGC
TTGATGCGTGTGTTGGCCGTGATGATTACTGGTTGTTGTGGACTGATGCC
GACGCGCTCATAGTTAATCAATCCATCTCACTCTTGGACGTGGTTGACGA
CGCCTATCATGTCATTGTGGCTCACGACTGGTTCATGTTGAATGCAGGCG
TCATGCTGTTCCGATGCTCCCCATGGAACAAGCAATTCCTGCAGCGTGTT
TACGACGCGCGTCAATTCGACAAGGCGCGCGCGCTCGATCAGAGTGCCTT
TCATGATTTCTTCACCAACCACCCCGACGTCAAGCCGCGCGTCAAGCACC
TGCCCAAACATGCCATTAATGTTTACACCGAGGAGTACCGACCCGGCGAC
TTTATCTTGCACTTTGCGGGCAAGTTGTATGAAGCCACGCCGTGGGGCAT
CACCGACATTGCGCGACAATTTGACGTCCTTTCTCGCGTCGACGACCAGC
AAAAAATCAGCTACTTCTTTAACACTCCATACTTACTCAACTACTTCTCC
GGCACTTGTGTCATGGGTCCGCCGGACAAAGACCCCAAGCGCGACTGTGA
TCCGCTGGACCCGCGTCGACTCAAGCTCCCAGAGCCACTAATTGCCATGA
GCTATCCTAATCGTTACCGCCAACTGCAGTACAGAAACCCCAGAATGAAA
CACTGGAAGGATCCCTACGACGTGCCAGGAGCCACTGACATCAAGATCCG
ACGCACTCATCCTCCTTCTTCCTCCGCGTAA