Ggra6185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6185.t1
Unique NameGgra6185.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:919326..921337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709338.1
PFAMsMetallophos
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K01525,ko:K22132
KEGG ReactionR00125
KEGG Pathwayko00230,map00230
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0031090,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805,GO:0098852
Evalue4.72e-97
EggNOG OGsCOG0639@1|root,KOG0371@2759|Eukaryota
EC3.6.1.41
Descriptionphosphoprotein phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6185Ggra6185Gracilaria gracilis GNS1m malegenetig00000045_pilon 919326..921337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6185.t1Ggra6185.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 919326..921337 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6185.t1.stop1Ggra6185.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 919326..919328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6185.t1.CDS1Ggra6185.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 919326..920637 -
Ggra6185.t1.CDS2Ggra6185.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 921177..921337 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6185.t1.exon1Ggra6185.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 919326..920637 -
Ggra6185.t1.exon2Ggra6185.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 921177..921337 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6185.t1.intron1Ggra6185.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 920638..921176 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6185.t1.start1Ggra6185.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 921335..921337 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6185.t1 ID=Ggra6185.t1|Name=Ggra6185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp
MAAVLHPPLASTARPTARPPPPPPPPPPPPLLRDYIDVYGYVHRAMPCTY
RPFTHQPPPPPPPPPPPPPPPPLSPRRSKLILTRRVHAWTLRSSSPPAHA
AAAAAAAAAATAAHSLPSLPTVALHAPPIAPELLLCAAPPVLTYVFQRGL
ITTTRKRRPADPPYRYLRLLYGSITPLSPGYLTASNPRAAGVRALKNWYR
SAARWRLLQPPPVKLLLSRRMAPLPDATALRQQPPPPPPAVRAVSPSHAD
RTLGLSPRLIVVGDVHGCIDEVQALLRLADYSPGDQVIFLGDLVAKGPDS
AAVVQLAREIGARMVRGNHDYEVIRFCAAKRRGVDAIVSPEHARIASTLS
SHDFKFLSDAPWFIECAPWKHLFVHAGFIPGVKLTQQNPRLMMNMRSVLN
DGTVSAKTVAGCEWARLWQGPHTVVFGHDACRGLQQYPFAKGIDTGCVYG
GRLTALLLPENRLLSVAAKRAYVSPRKLRSVRTAVSTATR*
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spliced messenger RNA

>Ggra6185.t1 ID=Ggra6185.t1|Name=Ggra6185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000045_pilon:919326..921337- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCGTGTTGCATCCGCCTCTTGCGTCGACAGCCCGACCGACCGC
CCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGCGCG
ACTATATCGACGTATATGGATACGTACACCGAGCCATGCCATGCACTTAT
CGCCCCTTTACTCACCAACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCGCTGTCGCCACGTCGCTCCAAGCTCATCCTCACGC
GCCGCGTGCACGCGTGGACGCTACGATCCTCCTCGCCGCCCGCGCACGCC
GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCGGCACACAGCCTGCC
GTCGCTGCCCACCGTCGCGCTGCACGCGCCGCCCATCGCGCCGGAGCTTC
TGCTGTGCGCCGCGCCGCCCGTGCTCACGTACGTCTTCCAGCGCGGCTTG
ATCACCACCACGCGCAAGCGACGACCCGCCGACCCGCCTTACCGCTATCT
GCGCCTGCTGTACGGCTCCATCACCCCCTTGTCGCCCGGCTATCTTACCG
CGTCCAACCCGCGCGCTGCCGGCGTGCGCGCGCTTAAGAATTGGTACCGC
AGCGCCGCGCGATGGCGCTTGTTGCAGCCCCCACCTGTCAAGCTCTTGTT
GTCGCGACGCATGGCGCCGCTGCCCGATGCAACCGCCCTCCGCCAACAGC
CGCCGCCGCCGCCGCCTGCCGTGCGCGCCGTGTCGCCGTCGCACGCCGAT
CGCACCTTGGGGCTGTCGCCGCGCCTCATCGTCGTCGGCGATGTGCACGG
CTGCATCGATGAGGTGCAGGCCCTGTTGAGGCTTGCCGATTACTCGCCGG
GCGATCAGGTCATCTTTTTGGGCGATTTGGTGGCAAAGGGCCCGGACAGC
GCCGCTGTCGTGCAGCTTGCCAGGGAGATTGGCGCCAGGATGGTGCGCGG
CAATCATGATTATGAAGTCATTCGCTTTTGCGCCGCCAAGCGACGCGGCG
TCGACGCCATCGTGTCGCCGGAACATGCGCGTATTGCCTCCACTCTGTCC
TCGCATGACTTCAAGTTTCTCAGCGATGCGCCGTGGTTCATCGAGTGTGC
GCCTTGGAAGCACCTCTTCGTGCACGCTGGCTTCATCCCGGGCGTCAAGC
TCACCCAGCAGAACCCCAGACTCATGATGAACATGAGGAGCGTGTTGAAC
GACGGCACTGTGAGCGCAAAGACCGTGGCGGGCTGTGAGTGGGCCAGGTT
GTGGCAGGGCCCCCATACCGTCGTGTTTGGACATGACGCCTGTAGAGGCT
TGCAGCAGTACCCGTTCGCAAAGGGAATTGATACGGGCTGCGTTTATGGC
GGACGACTTACTGCGCTCTTGCTGCCGGAGAATCGATTGCTTTCTGTCGC
TGCCAAGCGCGCCTATGTTTCACCAAGGAAACTCAGATCCGTTCGCACCG
CCGTTTCTACCGCTACACGCTAA
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protein sequence of Ggra6185.t1

>Ggra6185.t1 ID=Ggra6185.t1|Name=Ggra6185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MAAVLHPPLASTARPTARPPPPPPPPPPPPLLRDYIDVYGYVHRAMPCTY
RPFTHQPPPPPPPPPPPPPPPPLSPRRSKLILTRRVHAWTLRSSSPPAHA
AAAAAAAAAATAAHSLPSLPTVALHAPPIAPELLLCAAPPVLTYVFQRGL
ITTTRKRRPADPPYRYLRLLYGSITPLSPGYLTASNPRAAGVRALKNWYR
SAARWRLLQPPPVKLLLSRRMAPLPDATALRQQPPPPPPAVRAVSPSHAD
RTLGLSPRLIVVGDVHGCIDEVQALLRLADYSPGDQVIFLGDLVAKGPDS
AAVVQLAREIGARMVRGNHDYEVIRFCAAKRRGVDAIVSPEHARIASTLS
SHDFKFLSDAPWFIECAPWKHLFVHAGFIPGVKLTQQNPRLMMNMRSVLN
DGTVSAKTVAGCEWARLWQGPHTVVFGHDACRGLQQYPFAKGIDTGCVYG
GRLTALLLPENRLLSVAAKRAYVSPRKLRSVRTAVSTATR*
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mRNA from alignment at tig00000045_pilon:919326..921337-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6185.t1 ID=Ggra6185.t1|Name=Ggra6185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2012bp|location=Sequence derived from alignment at tig00000045_pilon:919326..921337- (Gracilaria gracilis GNS1m male)
ATGGCGGCCGTGTTGCATCCGCCTCTTGCGTCGACAGCCCGACCGACCGC
CCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGCGCG
ACTATATCGACGTATATGGATACGTACACCGAGCCATGCCATGCACTTAT
CGCCCCTTTACGTCAGCCGTGCCGCGGTCGCGCACCGTCTCGCTCCTGCT
CATGTGCTGCGCGTGTGCCGCAGACTCGAGACGTCCGCCGCGGTCGGCGC
GCGGGCCCCCCACCGCGTCGCGAGGCACACCTGTTCACTGAACACAACAC
ACACAAAGTCGCCCACCGCACGCGCTCGCGAGAGAAGCGCTGCGCCGTGC
GCCGCCGTATCTGATGTTACACCGTGCGCTGCTCTGCGCCTTTGTTTGGC
TGTTCTCCGTAACTTTTTCCCGCCCCCGCCACCGCGCGCACGTGTGCGCG
TTGTGCTGCGTCCGAGCGCGCGCCGCCGCCGCACGCCCGCACGCCGCCAA
TCTGCGCCGCGCGCGCCGCCAGATCGAGCGCACACGCTGCGCCCTGCCCC
ACGCCGCCGCCCGCCGCCGTGCCGCCCGCTGCCAGCGCGCTCGTCCACCA
TGAGCGCCGCCACCGCCGCCTTTCTGTCGCCCACGCCGCTGCCGTCGTCG
CGTCGCGCGCCCCGCGTGCGCCCGCGTCGCCGCCCGCGCTCATCGGCCAG
TCACCAACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCTGTCGCCACGTCGCTCCAAGCTCATCCTCACGCGCCGCGTGCAC
GCGTGGACGCTACGATCCTCCTCGCCGCCCGCGCACGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCCGCCACCGCGGCACACAGCCTGCCGTCGCTGCCCA
CCGTCGCGCTGCACGCGCCGCCCATCGCGCCGGAGCTTCTGCTGTGCGCC
GCGCCGCCCGTGCTCACGTACGTCTTCCAGCGCGGCTTGATCACCACCAC
GCGCAAGCGACGACCCGCCGACCCGCCTTACCGCTATCTGCGCCTGCTGT
ACGGCTCCATCACCCCCTTGTCGCCCGGCTATCTTACCGCGTCCAACCCG
CGCGCTGCCGGCGTGCGCGCGCTTAAGAATTGGTACCGCAGCGCCGCGCG
ATGGCGCTTGTTGCAGCCCCCACCTGTCAAGCTCTTGTTGTCGCGACGCA
TGGCGCCGCTGCCCGATGCAACCGCCCTCCGCCAACAGCCGCCGCCGCCG
CCGCCTGCCGTGCGCGCCGTGTCGCCGTCGCACGCCGATCGCACCTTGGG
GCTGTCGCCGCGCCTCATCGTCGTCGGCGATGTGCACGGCTGCATCGATG
AGGTGCAGGCCCTGTTGAGGCTTGCCGATTACTCGCCGGGCGATCAGGTC
ATCTTTTTGGGCGATTTGGTGGCAAAGGGCCCGGACAGCGCCGCTGTCGT
GCAGCTTGCCAGGGAGATTGGCGCCAGGATGGTGCGCGGCAATCATGATT
ATGAAGTCATTCGCTTTTGCGCCGCCAAGCGACGCGGCGTCGACGCCATC
GTGTCGCCGGAACATGCGCGTATTGCCTCCACTCTGTCCTCGCATGACTT
CAAGTTTCTCAGCGATGCGCCGTGGTTCATCGAGTGTGCGCCTTGGAAGC
ACCTCTTCGTGCACGCTGGCTTCATCCCGGGCGTCAAGCTCACCCAGCAG
AACCCCAGACTCATGATGAACATGAGGAGCGTGTTGAACGACGGCACTGT
GAGCGCAAAGACCGTGGCGGGCTGTGAGTGGGCCAGGTTGTGGCAGGGCC
CCCATACCGTCGTGTTTGGACATGACGCCTGTAGAGGCTTGCAGCAGTAC
CCGTTCGCAAAGGGAATTGATACGGGCTGCGTTTATGGCGGACGACTTAC
TGCGCTCTTGCTGCCGGAGAATCGATTGCTTTCTGTCGCTGCCAAGCGCG
CCTATGTTTCACCAAGGAAACTCAGATCCGTTCGCACCGCCGTTTCTACC
GCTACACGCTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:919326..921337-

>Ggra6185.t1 ID=Ggra6185.t1|Name=Ggra6185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00000045_pilon:919326..921337- (Gracilaria gracilis GNS1m male)
ATGGCGGCCGTGTTGCATCCGCCTCTTGCGTCGACAGCCCGACCGACCGC
CCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGCGCG
ACTATATCGACGTATATGGATACGTACACCGAGCCATGCCATGCACTTAT
CGCCCCTTTACTCACCAACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCGCTGTCGCCACGTCGCTCCAAGCTCATCCTCACGC
GCCGCGTGCACGCGTGGACGCTACGATCCTCCTCGCCGCCCGCGCACGCC
GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCGGCACACAGCCTGCC
GTCGCTGCCCACCGTCGCGCTGCACGCGCCGCCCATCGCGCCGGAGCTTC
TGCTGTGCGCCGCGCCGCCCGTGCTCACGTACGTCTTCCAGCGCGGCTTG
ATCACCACCACGCGCAAGCGACGACCCGCCGACCCGCCTTACCGCTATCT
GCGCCTGCTGTACGGCTCCATCACCCCCTTGTCGCCCGGCTATCTTACCG
CGTCCAACCCGCGCGCTGCCGGCGTGCGCGCGCTTAAGAATTGGTACCGC
AGCGCCGCGCGATGGCGCTTGTTGCAGCCCCCACCTGTCAAGCTCTTGTT
GTCGCGACGCATGGCGCCGCTGCCCGATGCAACCGCCCTCCGCCAACAGC
CGCCGCCGCCGCCGCCTGCCGTGCGCGCCGTGTCGCCGTCGCACGCCGAT
CGCACCTTGGGGCTGTCGCCGCGCCTCATCGTCGTCGGCGATGTGCACGG
CTGCATCGATGAGGTGCAGGCCCTGTTGAGGCTTGCCGATTACTCGCCGG
GCGATCAGGTCATCTTTTTGGGCGATTTGGTGGCAAAGGGCCCGGACAGC
GCCGCTGTCGTGCAGCTTGCCAGGGAGATTGGCGCCAGGATGGTGCGCGG
CAATCATGATTATGAAGTCATTCGCTTTTGCGCCGCCAAGCGACGCGGCG
TCGACGCCATCGTGTCGCCGGAACATGCGCGTATTGCCTCCACTCTGTCC
TCGCATGACTTCAAGTTTCTCAGCGATGCGCCGTGGTTCATCGAGTGTGC
GCCTTGGAAGCACCTCTTCGTGCACGCTGGCTTCATCCCGGGCGTCAAGC
TCACCCAGCAGAACCCCAGACTCATGATGAACATGAGGAGCGTGTTGAAC
GACGGCACTGTGAGCGCAAAGACCGTGGCGGGCTGTGAGTGGGCCAGGTT
GTGGCAGGGCCCCCATACCGTCGTGTTTGGACATGACGCCTGTAGAGGCT
TGCAGCAGTACCCGTTCGCAAAGGGAATTGATACGGGCTGCGTTTATGGC
GGACGACTTACTGCGCTCTTGCTGCCGGAGAATCGATTGCTTTCTGTCGC
TGCCAAGCGCGCCTATGTTTCACCAAGGAAACTCAGATCCGTTCGCACCG
CCGTTTCTACCGCTACACGCTAA
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