Ggra6183.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6183.t1
Unique NameGgra6183.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:914684..916112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6183Ggra6183Gracilaria gracilis GNS1m malegenetig00000045_pilon 914684..916112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6183.t1Ggra6183.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 914684..916112 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6183.t1.start1Ggra6183.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 914684..914686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6183.t1.CDS1Ggra6183.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 914684..914689 +
Ggra6183.t1.CDS2Ggra6183.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 914776..914794 +
Ggra6183.t1.CDS3Ggra6183.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000045_pilon 915511..916112 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6183.t1.exon1Ggra6183.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 914684..914689 +
Ggra6183.t1.exon2Ggra6183.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 914776..914794 +
Ggra6183.t1.exon3Ggra6183.t1.exon3Gracilaria gracilis GNS1m maleexontig00000045_pilon 915511..916112 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6183.t1.intron1Ggra6183.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 914690..914775 +
Ggra6183.t1.intron2Ggra6183.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000045_pilon 914795..915510 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6183.t1.stop1Ggra6183.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 916110..916112 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6183.t1 ID=Ggra6183.t1|Name=Ggra6183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MKGFYVKADQTASNQQIAEIADRLMRCENGLRDLWAEQQGQDEERKAVIL
LREEKENETGQKIMARLMECEKGLRELRAERQIQTEEYKSATLRCGYYER
KIDEDMQKLRKKLNDVGKEIGSLRGPGNGRWQAGVKSNAGPKERRDFSKL
NTDWSWGCVGRGEAHMYRKNKRCFSCGLVRDSKGIHRCVPDNERVMESSA
PASNANGA*
back to top

spliced messenger RNA

>Ggra6183.t1 ID=Ggra6183.t1|Name=Ggra6183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000045_pilon:914684..916112+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgaaGGGGTTTTATGTTAAAGCAGACCAAACCGCCAGTAACCAGCAAAT
AGCGGAGATCGCTGACAGGCTGATGCGTTGCGAGAACGGCTTGCGCGACC
TTTGGGCCGAACAGCAAGGCCAAGACGAGGAGAGAAAGGCCGTGATATTA
CTCCGCGAAGAAAAGGAAAACGAAACAGGACAAAAGATCATGGCGAGGCT
GATGGAGTGTGAGAAAGGTTTGCGTGAACTTCGGGCCGAAAGGCAAATCC
AAACCGAGGAGTACAAATCGGCGACTTTGCGATGCGGGTACTACGAAAGG
AAGATTGATGAAGACATGCAGAAGCTCAGAAAGAAGCTAAACGATGTCGG
AAAGGAAATTGGAAGCCTGAGGGGCCCTGGAAACGGCAGATGGCAGGCAG
GAGTGAAATCCAACGCTGGTCCCAAAGAAAGACGTGACTTTAGCAAGTTA
AACACGGACTGGTCTTGGGGCTGCGTCGGAAGAGGGGAGGCTCACATGTA
CCGCAAGAACAAACGGTGCTTTTCATGTGGGCTGGTCCGGGATTCGAAAG
GAATACACCGCTGCGTTCCTGACAACGAACGTGTGATGGAGAGTTCTGCG
CCTGCAAGTAATGCGAATGGTGCATAA
back to top

protein sequence of Ggra6183.t1

>Ggra6183.t1 ID=Ggra6183.t1|Name=Ggra6183.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MKGFYVKADQTASNQQIAEIADRLMRCENGLRDLWAEQQGQDEERKAVIL
LREEKENETGQKIMARLMECEKGLRELRAERQIQTEEYKSATLRCGYYER
KIDEDMQKLRKKLNDVGKEIGSLRGPGNGRWQAGVKSNAGPKERRDFSKL
NTDWSWGCVGRGEAHMYRKNKRCFSCGLVRDSKGIHRCVPDNERVMESSA
PASNANGA*
back to top

mRNA from alignment at tig00000045_pilon:914684..916112+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6183.t1 ID=Ggra6183.t1|Name=Ggra6183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1429bp|location=Sequence derived from alignment at tig00000045_pilon:914684..916112+ (Gracilaria gracilis GNS1m male)
atgaaGGTAAGTGCTTAAATCTACTCTGCACAGAGCTTCTATCATATGAG
GTTGCTGACGATGACACATTTCTGTACCTTGCATTCACTAAGGGGTTTTA
TGTTAAAGCAGGTACGTATATGGCCAAATGTCACAATGCTGCGACGAAAA
TGAGCAGCCCTTCACGCGATACAAACGATTTTGGCCTCACAAAACTGCGC
CTTCATCAATACAGAGGACTAGCTGTCGCTTTGGACAAACTTGTCCAATA
AGGAAAATGCTGCTTCTTAGGCACCTGGGGAGAGCAAGGCAGCAGTCTGC
AACTCGTCACAGTTACACCCTCCgcaccccgctcggacgcatctttcacc
accatgttcttcctcaaaggccagatcctcctcgcaaacagacCCCTATG
ACTTGCAATCACCACTTCTCTGACCAGACCCATTCACGCACACTCCGCCG
TGGCAATGCAGCCTATTCTTGCAATCCCAAAATGGTTTCtgcccgcatgt
cccgtggctggtcgtaattgcttctactacacttagggtaacaCAGAGGA
CGATCGAATTGAATGAAACGAGGCGAACTCTGCCGAACATCCCTGCTTTT
GCTCAAATCAGAACGGGCTGCACGACGTAAGCCATGCGCTTTCGTCTCCT
CTTTGCTATAAAAGGCAAGCTCACAGagtacgggaagcagatctgccttt
caacgcaaatagcaacctccgtaacttgaaagaatgatcgacccgatatc
tctcattgcgattcccgtcttgtcggctgtctttgcgggaattgcttcgc
aattgcaaactcgcggactCCATGGAGACCAAACCGCCAGTAACCAGCAA
ATAGCGGAGATCGCTGACAGGCTGATGCGTTGCGAGAACGGCTTGCGCGA
CCTTTGGGCCGAACAGCAAGGCCAAGACGAGGAGAGAAAGGCCGTGATAT
TACTCCGCGAAGAAAAGGAAAACGAAACAGGACAAAAGATCATGGCGAGG
CTGATGGAGTGTGAGAAAGGTTTGCGTGAACTTCGGGCCGAAAGGCAAAT
CCAAACCGAGGAGTACAAATCGGCGACTTTGCGATGCGGGTACTACGAAA
GGAAGATTGATGAAGACATGCAGAAGCTCAGAAAGAAGCTAAACGATGTC
GGAAAGGAAATTGGAAGCCTGAGGGGCCCTGGAAACGGCAGATGGCAGGC
AGGAGTGAAATCCAACGCTGGTCCCAAAGAAAGACGTGACTTTAGCAAGT
TAAACACGGACTGGTCTTGGGGCTGCGTCGGAAGAGGGGAGGCTCACATG
TACCGCAAGAACAAACGGTGCTTTTCATGTGGGCTGGTCCGGGATTCGAA
AGGAATACACCGCTGCGTTCCTGACAACGAACGTGTGATGGAGAGTTCTG
CGCCTGCAAGTAATGCGAATGGTGCATAA
back to top

Coding sequence (CDS) from alignment at tig00000045_pilon:914684..916112+

>Ggra6183.t1 ID=Ggra6183.t1|Name=Ggra6183.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000045_pilon:914684..916112+ (Gracilaria gracilis GNS1m male)
atgaaGGGGTTTTATGTTAAAGCAGACCAAACCGCCAGTAACCAGCAAAT
AGCGGAGATCGCTGACAGGCTGATGCGTTGCGAGAACGGCTTGCGCGACC
TTTGGGCCGAACAGCAAGGCCAAGACGAGGAGAGAAAGGCCGTGATATTA
CTCCGCGAAGAAAAGGAAAACGAAACAGGACAAAAGATCATGGCGAGGCT
GATGGAGTGTGAGAAAGGTTTGCGTGAACTTCGGGCCGAAAGGCAAATCC
AAACCGAGGAGTACAAATCGGCGACTTTGCGATGCGGGTACTACGAAAGG
AAGATTGATGAAGACATGCAGAAGCTCAGAAAGAAGCTAAACGATGTCGG
AAAGGAAATTGGAAGCCTGAGGGGCCCTGGAAACGGCAGATGGCAGGCAG
GAGTGAAATCCAACGCTGGTCCCAAAGAAAGACGTGACTTTAGCAAGTTA
AACACGGACTGGTCTTGGGGCTGCGTCGGAAGAGGGGAGGCTCACATGTA
CCGCAAGAACAAACGGTGCTTTTCATGTGGGCTGGTCCGGGATTCGAAAG
GAATACACCGCTGCGTTCCTGACAACGAACGTGTGATGGAGAGTTCTGCG
CCTGCAAGTAATGCGAATGGTGCATAA
back to top