Ggra6180.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6180.t1
Unique NameGgra6180.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:905795..907003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705722.1
Max annot lvl130081.XP_005705722.1|-
Evalue3.29e-115
EggNOG OGsCOG0473@1|root,KOG0786@2759|Eukaryota
Description3-isopropylmalate dehydrogenase activity
COG categoryCE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6180Ggra6180Gracilaria gracilis GNS1m malegenetig00000045_pilon 905795..907003 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6180.t1.start1Ggra6180.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 905795..905797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6180.t1.CDS1Ggra6180.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 905795..907003 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6180.t1.exon1Ggra6180.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 905795..907003 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6180.t1.stop1Ggra6180.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 907001..907003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6180.t1Ggra6180.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 905795..907003 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6180.t1 ID=Ggra6180.t1|Name=Ggra6180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MVAFVTHALSVAGARPRPSRVCPRMGPVKGSSQNPYQIAVLPGDGAGPAV
ATAAVRVLEELTTYAEIHFDFRYGDYGADAYEKCGKLVTPETVQICRESD
AVLRSYQGFERGVGKDGSAHLQLRDELGLFAQFRPVIIYPALASQSTLRK
EVVSAVDIMLVREISAGALGAESITEEESEVSEIRYSKGQISAIANAALQ
VALQRNGNILNVDKADALSISRFWRRIVHETIEREAKGNDGILLTDMYVD
DFVREVILRPGDFDVVVTSNLFGDILAEVIAALAGPSRYSPSFWVNREGL
GVYGPGDIYNASAYPDKNVEASPIALIRSASMMLKYALEEPAAAGIIQQA
LRTSMEEIVGTSASNGNGHPIVGTSESTDIVTRSMQLMRQYEQVCDPTEC
GE*
back to top

spliced messenger RNA

>Ggra6180.t1 ID=Ggra6180.t1|Name=Ggra6180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000045_pilon:905795..907003+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCTTCGTCACCCATGCATTGTCAGTAGCTGGCGCGCGTCCGCG
CCCTTCCCGCGTTTGCCCGCGCATGGGCCCCGTCAAGGGATCGTCGCAGA
ATCCTTATCAGATAGCAGTGTTGCCTGGCGATGGTGCGGGCCCCGCCGTG
GCTACGGCGGCCGTGCGCGTGCTGGAGGAGCTCACTACCTACGCCGAGAT
CCACTTCGATTTCAGGTATGGCGATTACGGCGCTGATGCGTACGAGAAGT
GCGGTAAACTGGTCACGCCGGAGACCGTGCAGATTTGTCGCGAATCTGAT
GCTGTCTTGCGAAGCTACCAGGGTTTTGAAAGAGGTGTTGGAAAGGATGG
AAGTGCCCATTTGCAGCTCAGGGATGAGCTTGGTTTGTTTGCTCAGTTCC
GACCTGTTATTATTTATCCGGCTCTGGCTTCGCAAAGCACGCTCAGGAAG
GAGGTTGTCAGCGCTGTGGACATCATGCTCGTGAGAGAAATTTCGGCCGG
TGCGCTCGGAGCGGAAAGCATCACAGAAGAAGAGAGTGAAGTGAGTGAGA
TTCGCTACTCCAAAGGTCAGATCTCTGCAATTGCAAACGCCGCACTGCAG
GTTGCTCTGCAACGAAATGGAAACATTCTCAACGTTGACAAGGCAGATGC
ATTGTCAATCTCAAGGTTTTGGAGAAGAATCGTGCACGAGACCATCGAAC
GCGAGGCCAAAGGGAACGACGGCATTTTGCTCACCGACATGTACGTTGAT
GACTTTGTCAGGGAAGTTATACTACGTCCCGGAGATTTTGATGTAGTGGT
CACAAGTAATCTTTTCGGTGACATTCTTGCTGAGGTTATTGCCGCTCTGG
CAGGACCTTCTCGATATTCTCCAAGTTTTTGGGTCAATCGCGAGGGACTT
GGCGTATATGGCCCGGGTGATATTTACAATGCTTCTGCATATCCAGATAA
GAATGTGGAGGCCTCTCCCATTGCATTGATAAGGTCTGCGAGTATGATGC
TTAAGTACGCTCTGGAAGAACCTGCAGCTGCGGGTATTATACAGCAGGCG
TTAAGAACGAGTATGGAAGAGATTGTTGGAACTTCGGCCTCGAACGGAAA
TGGACATCCTATAGTGGGAACCTCAGAATCCACTGATATAGTAACCAGGA
GTATGCAATTGATGAGGCAATATGAACAGGTTTGTGATCCGACTGAGTGT
GGAGAATAG
back to top

protein sequence of Ggra6180.t1

>Ggra6180.t1 ID=Ggra6180.t1|Name=Ggra6180.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MVAFVTHALSVAGARPRPSRVCPRMGPVKGSSQNPYQIAVLPGDGAGPAV
ATAAVRVLEELTTYAEIHFDFRYGDYGADAYEKCGKLVTPETVQICRESD
AVLRSYQGFERGVGKDGSAHLQLRDELGLFAQFRPVIIYPALASQSTLRK
EVVSAVDIMLVREISAGALGAESITEEESEVSEIRYSKGQISAIANAALQ
VALQRNGNILNVDKADALSISRFWRRIVHETIEREAKGNDGILLTDMYVD
DFVREVILRPGDFDVVVTSNLFGDILAEVIAALAGPSRYSPSFWVNREGL
GVYGPGDIYNASAYPDKNVEASPIALIRSASMMLKYALEEPAAAGIIQQA
LRTSMEEIVGTSASNGNGHPIVGTSESTDIVTRSMQLMRQYEQVCDPTEC
GE*
back to top

mRNA from alignment at tig00000045_pilon:905795..907003+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6180.t1 ID=Ggra6180.t1|Name=Ggra6180.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000045_pilon:905795..907003+ (Gracilaria gracilis GNS1m male)
ATGGTCGCCTTCGTCACCCATGCATTGTCAGTAGCTGGCGCGCGTCCGCG
CCCTTCCCGCGTTTGCCCGCGCATGGGCCCCGTCAAGGGATCGTCGCAGA
ATCCTTATCAGATAGCAGTGTTGCCTGGCGATGGTGCGGGCCCCGCCGTG
GCTACGGCGGCCGTGCGCGTGCTGGAGGAGCTCACTACCTACGCCGAGAT
CCACTTCGATTTCAGGTATGGCGATTACGGCGCTGATGCGTACGAGAAGT
GCGGTAAACTGGTCACGCCGGAGACCGTGCAGATTTGTCGCGAATCTGAT
GCTGTCTTGCGAAGCTACCAGGGTTTTGAAAGAGGTGTTGGAAAGGATGG
AAGTGCCCATTTGCAGCTCAGGGATGAGCTTGGTTTGTTTGCTCAGTTCC
GACCTGTTATTATTTATCCGGCTCTGGCTTCGCAAAGCACGCTCAGGAAG
GAGGTTGTCAGCGCTGTGGACATCATGCTCGTGAGAGAAATTTCGGCCGG
TGCGCTCGGAGCGGAAAGCATCACAGAAGAAGAGAGTGAAGTGAGTGAGA
TTCGCTACTCCAAAGGTCAGATCTCTGCAATTGCAAACGCCGCACTGCAG
GTTGCTCTGCAACGAAATGGAAACATTCTCAACGTTGACAAGGCAGATGC
ATTGTCAATCTCAAGGTTTTGGAGAAGAATCGTGCACGAGACCATCGAAC
GCGAGGCCAAAGGGAACGACGGCATTTTGCTCACCGACATGTACGTTGAT
GACTTTGTCAGGGAAGTTATACTACGTCCCGGAGATTTTGATGTAGTGGT
CACAAGTAATCTTTTCGGTGACATTCTTGCTGAGGTTATTGCCGCTCTGG
CAGGACCTTCTCGATATTCTCCAAGTTTTTGGGTCAATCGCGAGGGACTT
GGCGTATATGGCCCGGGTGATATTTACAATGCTTCTGCATATCCAGATAA
GAATGTGGAGGCCTCTCCCATTGCATTGATAAGGTCTGCGAGTATGATGC
TTAAGTACGCTCTGGAAGAACCTGCAGCTGCGGGTATTATACAGCAGGCG
TTAAGAACGAGTATGGAAGAGATTGTTGGAACTTCGGCCTCGAACGGAAA
TGGACATCCTATAGTGGGAACCTCAGAATCCACTGATATAGTAACCAGGA
GTATGCAATTGATGAGGCAATATGAACAGGTTTGTGATCCGACTGAGTGT
GGAGAATAG
back to top

Coding sequence (CDS) from alignment at tig00000045_pilon:905795..907003+

>Ggra6180.t1 ID=Ggra6180.t1|Name=Ggra6180.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000045_pilon:905795..907003+ (Gracilaria gracilis GNS1m male)
ATGGTCGCCTTCGTCACCCATGCATTGTCAGTAGCTGGCGCGCGTCCGCG
CCCTTCCCGCGTTTGCCCGCGCATGGGCCCCGTCAAGGGATCGTCGCAGA
ATCCTTATCAGATAGCAGTGTTGCCTGGCGATGGTGCGGGCCCCGCCGTG
GCTACGGCGGCCGTGCGCGTGCTGGAGGAGCTCACTACCTACGCCGAGAT
CCACTTCGATTTCAGGTATGGCGATTACGGCGCTGATGCGTACGAGAAGT
GCGGTAAACTGGTCACGCCGGAGACCGTGCAGATTTGTCGCGAATCTGAT
GCTGTCTTGCGAAGCTACCAGGGTTTTGAAAGAGGTGTTGGAAAGGATGG
AAGTGCCCATTTGCAGCTCAGGGATGAGCTTGGTTTGTTTGCTCAGTTCC
GACCTGTTATTATTTATCCGGCTCTGGCTTCGCAAAGCACGCTCAGGAAG
GAGGTTGTCAGCGCTGTGGACATCATGCTCGTGAGAGAAATTTCGGCCGG
TGCGCTCGGAGCGGAAAGCATCACAGAAGAAGAGAGTGAAGTGAGTGAGA
TTCGCTACTCCAAAGGTCAGATCTCTGCAATTGCAAACGCCGCACTGCAG
GTTGCTCTGCAACGAAATGGAAACATTCTCAACGTTGACAAGGCAGATGC
ATTGTCAATCTCAAGGTTTTGGAGAAGAATCGTGCACGAGACCATCGAAC
GCGAGGCCAAAGGGAACGACGGCATTTTGCTCACCGACATGTACGTTGAT
GACTTTGTCAGGGAAGTTATACTACGTCCCGGAGATTTTGATGTAGTGGT
CACAAGTAATCTTTTCGGTGACATTCTTGCTGAGGTTATTGCCGCTCTGG
CAGGACCTTCTCGATATTCTCCAAGTTTTTGGGTCAATCGCGAGGGACTT
GGCGTATATGGCCCGGGTGATATTTACAATGCTTCTGCATATCCAGATAA
GAATGTGGAGGCCTCTCCCATTGCATTGATAAGGTCTGCGAGTATGATGC
TTAAGTACGCTCTGGAAGAACCTGCAGCTGCGGGTATTATACAGCAGGCG
TTAAGAACGAGTATGGAAGAGATTGTTGGAACTTCGGCCTCGAACGGAAA
TGGACATCCTATAGTGGGAACCTCAGAATCCACTGATATAGTAACCAGGA
GTATGCAATTGATGAGGCAATATGAACAGGTTTGTGATCCGACTGAGTGT
GGAGAATAG
back to top