Ggra6179.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6179.t1
Unique NameGgra6179.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:904168..905427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000016211
Preferred namePLA2G7
PFAMsPAF-AH_p_II
Max annot lvl33208|Metazoa
KEGG rclassRC00037,RC00094
KEGG koko:K01062
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko01110,ko01130,map00565,map01100,map01110,map01130
GOsGO:0002009,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0003674,GO:0003824,GO:0003847,GO:0004620,GO:0004623,GO:0005488,GO:0005543,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009611,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010941,GO:0012505,GO:0016020,GO:0016042,GO:0016043,GO:0016298,GO:0016331,GO:0016787,GO:0016788,GO:0017144,GO:0019637,GO:0030258,GO:0030334,GO:0030335,GO:0031347,GO:0031349,GO:0031984,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0032994,GO:0034358,GO:0034362,GO:0034367,GO:0034368,GO:0034369,GO:0034374,GO:0034440,GO:0034441,GO:0040012,GO:0040017,GO:0042060,GO:0042175,GO:0042981,GO:0043062,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044237,GO:0044238,GO:0044255,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046469,GO:0046486,GO:0047499,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0050727,GO:0050729,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0050920,GO:0050921,GO:0051270,GO:0051272,GO:0052689,GO:0055114,GO:0060429,GO:0060548,GO:0065007,GO:0065008,GO:0071675,GO:0071677,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0080134,GO:0090025,GO:0090026,GO:0097006,GO:0097164,GO:0098827,GO:1901564,GO:1901575,GO:1990777,GO:2000145,GO:2000147
Evalue9.74e-26
EggNOG OGsCOG4188@1|root,KOG3847@2759|Eukaryota,38D7T@33154|Opisthokonta,3BE36@33208|Metazoa,3D3K0@33213|Bilateria,487PE@7711|Chordata
EC3.1.1.47
Description1-alkyl-2-acetylglycerophosphocholine esterase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6179Ggra6179Gracilaria gracilis GNS1m malegenetig00000045_pilon 904168..905427 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6179.t1.start1Ggra6179.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 904168..904170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6179.t1.CDS1Ggra6179.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 904168..905427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6179.t1.exon1Ggra6179.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 904168..905427 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6179.t1.stop1Ggra6179.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 905425..905427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6179.t1Ggra6179.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 904168..905427 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6179.t1 ID=Ggra6179.t1|Name=Ggra6179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MPRLQFIGPGLELCRASPADLLRQRQPNLSRAVCVQTGVGRRSNFSMTER
PSGRYDVSVADVLVPPLRARVYYPTTNSSASALRAPWLAPSNEFPHEVVT
NALRFVRVPLAQVFGVPLHTVASRTLPASYGAPLVPSQKLPKLPVHIFSH
GLGGATGGYNHVCMEIASHGGIVFAPEHSDGSAFVAKVDGERVEYTRYNP
LSHGASELEFRENQLQTRVSDLEQTLKNIHSINVGESSLQAVDGAPKAPI
LTGRLDVSNVHVCGHSFGGATVLAFSRRTAVNSVICLDAWMRSLTRKVTD
LDVGQAKLLFVDQGLSNMRESISAREGLPRMSGGGTCDAVVIEGASHNNS
SDFALRLPRWVAVASGMTRRHSDPLKLLEQQALVVKEFLNGDWRSFRERV
REGDVDGIGIAPLGRARCI*
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spliced messenger RNA

>Ggra6179.t1 ID=Ggra6179.t1|Name=Ggra6179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000045_pilon:904168..905427+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGGCTCCAGTTCATAGGGCCGGGACTGGAGCTTTGCCGTGCATC
GCCTGCTGACCTTCTGCGACAGCGCCAACCCAACTTGTCGCGTGCAGTGT
GTGTTCAAACGGGCGTAGGCCGTCGTTCCAATTTTTCAATGACTGAGCGA
CCAAGCGGTCGTTACGACGTCTCGGTAGCCGACGTACTTGTACCTCCTTT
ACGGGCACGGGTATATTATCCGACGACCAATTCGTCAGCTAGTGCTCTAC
GAGCGCCGTGGCTAGCGCCGTCCAACGAATTTCCGCACGAGGTTGTAACG
AATGCGTTGCGATTCGTGCGCGTTCCGCTTGCTCAAGTATTCGGCGTGCC
CCTTCACACTGTAGCAAGCAGGACACTGCCGGCTTCGTATGGAGCGCCAT
TGGTTCCGTCGCAAAAGCTGCCCAAGCTACCCGTGCACATATTTTCACAT
GGACTAGGAGGGGCAACCGGTGGATACAACCATGTTTGTATGGAGATTGC
ATCGCATGGGGGAATCGTTTTTGCTCCGGAACATTCGGATGGTAGCGCGT
TTGTGGCCAAAGTAGATGGCGAACGGGTGGAATATACAAGATACAATCCA
CTGTCTCACGGCGCTTCTGAGCTGGAATTCAGGGAGAATCAGCTGCAAAC
TAGGGTATCGGACCTTGAACAGACTTTGAAGAACATTCATAGCATTAACG
TTGGAGAAAGTAGTCTGCAAGCTGTGGACGGAGCGCCAAAAGCTCCAATA
CTAACTGGAAGATTAGATGTGAGCAATGTTCACGTGTGCGGGCACTCGTT
CGGGGGAGCAACTGTATTGGCGTTTTCCAGGCGCACAGCGGTGAACTCGG
TGATTTGCCTGGACGCATGGATGCGCTCTCTAACACGAAAGGTAACGGAC
TTGGACGTGGGACAGGCAAAGTTGCTGTTTGTGGATCAGGGGTTGTCCAA
TATGCGCGAGAGCATATCGGCCAGAGAGGGGTTGCCTCGCATGTCTGGAG
GTGGAACATGTGATGCGGTTGTGATCGAAGGAGCGTCTCACAACAACTCA
TCAGATTTTGCGCTGAGGCTTCCGAGGTGGGTGGCGGTTGCCAGCGGGAT
GACGAGGCGGCATAGTGATCCGCTGAAACTGCTCGAACAGCAGGCGCTGG
TGGTGAAGGAATTCCTGAACGGGGATTGGAGGTCTTTCAGGGAGCGCGTG
AGGGAGGGTGACGTTGACGGCATAGGAATAGCGCCGCTGGGGCGGGCGAG
GTGCATCTAG
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protein sequence of Ggra6179.t1

>Ggra6179.t1 ID=Ggra6179.t1|Name=Ggra6179.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MPRLQFIGPGLELCRASPADLLRQRQPNLSRAVCVQTGVGRRSNFSMTER
PSGRYDVSVADVLVPPLRARVYYPTTNSSASALRAPWLAPSNEFPHEVVT
NALRFVRVPLAQVFGVPLHTVASRTLPASYGAPLVPSQKLPKLPVHIFSH
GLGGATGGYNHVCMEIASHGGIVFAPEHSDGSAFVAKVDGERVEYTRYNP
LSHGASELEFRENQLQTRVSDLEQTLKNIHSINVGESSLQAVDGAPKAPI
LTGRLDVSNVHVCGHSFGGATVLAFSRRTAVNSVICLDAWMRSLTRKVTD
LDVGQAKLLFVDQGLSNMRESISAREGLPRMSGGGTCDAVVIEGASHNNS
SDFALRLPRWVAVASGMTRRHSDPLKLLEQQALVVKEFLNGDWRSFRERV
REGDVDGIGIAPLGRARCI*
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mRNA from alignment at tig00000045_pilon:904168..905427+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6179.t1 ID=Ggra6179.t1|Name=Ggra6179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000045_pilon:904168..905427+ (Gracilaria gracilis GNS1m male)
ATGCCACGGCTCCAGTTCATAGGGCCGGGACTGGAGCTTTGCCGTGCATC
GCCTGCTGACCTTCTGCGACAGCGCCAACCCAACTTGTCGCGTGCAGTGT
GTGTTCAAACGGGCGTAGGCCGTCGTTCCAATTTTTCAATGACTGAGCGA
CCAAGCGGTCGTTACGACGTCTCGGTAGCCGACGTACTTGTACCTCCTTT
ACGGGCACGGGTATATTATCCGACGACCAATTCGTCAGCTAGTGCTCTAC
GAGCGCCGTGGCTAGCGCCGTCCAACGAATTTCCGCACGAGGTTGTAACG
AATGCGTTGCGATTCGTGCGCGTTCCGCTTGCTCAAGTATTCGGCGTGCC
CCTTCACACTGTAGCAAGCAGGACACTGCCGGCTTCGTATGGAGCGCCAT
TGGTTCCGTCGCAAAAGCTGCCCAAGCTACCCGTGCACATATTTTCACAT
GGACTAGGAGGGGCAACCGGTGGATACAACCATGTTTGTATGGAGATTGC
ATCGCATGGGGGAATCGTTTTTGCTCCGGAACATTCGGATGGTAGCGCGT
TTGTGGCCAAAGTAGATGGCGAACGGGTGGAATATACAAGATACAATCCA
CTGTCTCACGGCGCTTCTGAGCTGGAATTCAGGGAGAATCAGCTGCAAAC
TAGGGTATCGGACCTTGAACAGACTTTGAAGAACATTCATAGCATTAACG
TTGGAGAAAGTAGTCTGCAAGCTGTGGACGGAGCGCCAAAAGCTCCAATA
CTAACTGGAAGATTAGATGTGAGCAATGTTCACGTGTGCGGGCACTCGTT
CGGGGGAGCAACTGTATTGGCGTTTTCCAGGCGCACAGCGGTGAACTCGG
TGATTTGCCTGGACGCATGGATGCGCTCTCTAACACGAAAGGTAACGGAC
TTGGACGTGGGACAGGCAAAGTTGCTGTTTGTGGATCAGGGGTTGTCCAA
TATGCGCGAGAGCATATCGGCCAGAGAGGGGTTGCCTCGCATGTCTGGAG
GTGGAACATGTGATGCGGTTGTGATCGAAGGAGCGTCTCACAACAACTCA
TCAGATTTTGCGCTGAGGCTTCCGAGGTGGGTGGCGGTTGCCAGCGGGAT
GACGAGGCGGCATAGTGATCCGCTGAAACTGCTCGAACAGCAGGCGCTGG
TGGTGAAGGAATTCCTGAACGGGGATTGGAGGTCTTTCAGGGAGCGCGTG
AGGGAGGGTGACGTTGACGGCATAGGAATAGCGCCGCTGGGGCGGGCGAG
GTGCATCTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:904168..905427+

>Ggra6179.t1 ID=Ggra6179.t1|Name=Ggra6179.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000045_pilon:904168..905427+ (Gracilaria gracilis GNS1m male)
ATGCCACGGCTCCAGTTCATAGGGCCGGGACTGGAGCTTTGCCGTGCATC
GCCTGCTGACCTTCTGCGACAGCGCCAACCCAACTTGTCGCGTGCAGTGT
GTGTTCAAACGGGCGTAGGCCGTCGTTCCAATTTTTCAATGACTGAGCGA
CCAAGCGGTCGTTACGACGTCTCGGTAGCCGACGTACTTGTACCTCCTTT
ACGGGCACGGGTATATTATCCGACGACCAATTCGTCAGCTAGTGCTCTAC
GAGCGCCGTGGCTAGCGCCGTCCAACGAATTTCCGCACGAGGTTGTAACG
AATGCGTTGCGATTCGTGCGCGTTCCGCTTGCTCAAGTATTCGGCGTGCC
CCTTCACACTGTAGCAAGCAGGACACTGCCGGCTTCGTATGGAGCGCCAT
TGGTTCCGTCGCAAAAGCTGCCCAAGCTACCCGTGCACATATTTTCACAT
GGACTAGGAGGGGCAACCGGTGGATACAACCATGTTTGTATGGAGATTGC
ATCGCATGGGGGAATCGTTTTTGCTCCGGAACATTCGGATGGTAGCGCGT
TTGTGGCCAAAGTAGATGGCGAACGGGTGGAATATACAAGATACAATCCA
CTGTCTCACGGCGCTTCTGAGCTGGAATTCAGGGAGAATCAGCTGCAAAC
TAGGGTATCGGACCTTGAACAGACTTTGAAGAACATTCATAGCATTAACG
TTGGAGAAAGTAGTCTGCAAGCTGTGGACGGAGCGCCAAAAGCTCCAATA
CTAACTGGAAGATTAGATGTGAGCAATGTTCACGTGTGCGGGCACTCGTT
CGGGGGAGCAACTGTATTGGCGTTTTCCAGGCGCACAGCGGTGAACTCGG
TGATTTGCCTGGACGCATGGATGCGCTCTCTAACACGAAAGGTAACGGAC
TTGGACGTGGGACAGGCAAAGTTGCTGTTTGTGGATCAGGGGTTGTCCAA
TATGCGCGAGAGCATATCGGCCAGAGAGGGGTTGCCTCGCATGTCTGGAG
GTGGAACATGTGATGCGGTTGTGATCGAAGGAGCGTCTCACAACAACTCA
TCAGATTTTGCGCTGAGGCTTCCGAGGTGGGTGGCGGTTGCCAGCGGGAT
GACGAGGCGGCATAGTGATCCGCTGAAACTGCTCGAACAGCAGGCGCTGG
TGGTGAAGGAATTCCTGAACGGGGATTGGAGGTCTTTCAGGGAGCGCGTG
AGGGAGGGTGACGTTGACGGCATAGGAATAGCGCCGCTGGGGCGGGCGAG
GTGCATCTAG
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