Ggra6176.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6176.t1
Unique Name	Ggra6176.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	650

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:896763..898712 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6176	Ggra6176	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 896763..898712 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6176.t1.start1	Ggra6176.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 896763..896765 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6176.t1.CDS1	Ggra6176.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 896763..898712 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6176.t1.exon1	Ggra6176.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 896763..898712 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6176.t1.stop1	Ggra6176.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 898710..898712 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6176.t1	Ggra6176.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 896763..898712 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:896763..898712+
coding sequence from alignment at tig00000045_pilon:896763..898712+

mRNA sequence

>Ggra6176.t1 ID=Ggra6176.t1|Name=Ggra6176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=650bp
MAEFGLFLLEAVVGIALDRVFNPHENSALIKEVDELRSNVIGLRHQVASL
DRLIQNVTGNVPDEVLRFRRVRKNVHNRLSCFDPTLVDFATELVASLLNG
HALGFQLKVHASKKALNRGQAFETHGFEVILAASKTVTQNTMLLKDFLDD
ITQYASFQPMSKLEKPIITLNMVCGSTIDFKTLELMRYRIALRLVTLNAI
ALNWNTPGMGSLTLNNVPLSNLDDSMCKYVYNTEMDANMQVENFPNKFWS
GEFKRLTDLLRSSVESSISCFRVLILSFDDWITNDDAEHHGFSSKIRTFV
SGSTTRCVEVRLKDYSHWDHINLEQILFWGLSMSIVVFRFATMEQLTLML
EASTQITMKYSGMMDDVKRVLFVETSSIDNVGHLRQEVKNVASKRRLIEP
RDEEDILFEKSYISIENMMAYIRGRGESMKSIINSDVTGESRDLMISIAR
ILNREVAMDEAIHEGGAVMKFASKIRGKWASSRIELVRQDGEMLLSNGDL
NAGFVMQKANHVYDGEYVDFRGVPRQSSVHLKLNLRVYGMPHLFRYSWFR
KWRALSELADLVQDHNLFLGVVCEEKKTLKRSAGGSKGRIVSSISVRAIG
GGNWNDYLHARLQYCILQVGELQKKEASWVVLRVLLKLIPGLSAFCRKP*

spliced messenger RNA

>Ggra6176.t1 ID=Ggra6176.t1|Name=Ggra6176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000045_pilon:896763..898712+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAATTTGGCCTGTTCCTTCTGGAGGCGGTTGTGGGCATAGCTCT
CGATCGCGTGTTCAATCCACATGAAAATTCGGCGCTCATCAAAGAAGTGG
ACGAACTGAGAAGCAACGTCATCGGTCTGCGACACCAGGTTGCCTCCTTG
GATCGGCTCATTCAAAACGTCACTGGAAATGTACCAGACGAGGTACTTCG
CTTTCGTAGGGTTCGCAAAAATGTCCACAATCGTTTGAGCTGCTTCGACC
CGACCTTAGTTGACTTTGCGACGGAACTCGTCGCATCATTATTGAACGGT
CATGCTCTGGGGTTTCAGCTCAAAGTCCATGCCAGTAAGAAGGCCCTCAA
TCGGGGCCAGGCTTTCGAGACACATGGATTTGAGGTCATATTGGCAGCCA
GCAAAACTGTGACGCAGAACACAATGCTTTTGAAAGACTTTTTGGATGAT
ATAACTCAATACGCTAGTTTTCAACCCATGTCGAAACTTGAAAAGCCAAT
CATTACGTTGAACATGGTTTGTGGAAGCACTATTGACTTCAAGACTCTCG
AACTCATGAGGTACCGAATTGCATTACGATTGGTTACTCTCAATGCAATC
GCGCTGAATTGGAACACTCCAGGTATGGGATCGTTGACACTTAACAACGT
ACCTCTCAGTAACCTGGACGATTCCATGTGCAAATATGTCTACAACACAG
AAATGGATGCGAACATGCAAGTCGAGAACTTCCCTAACAAGTTCTGGTCA
GGCGAATTCAAACGGCTTACAGATTTGTTAAGGAGCAGTGTTGAGTCTTC
AATCTCGTGCTTCAGGGTACTCATTCTTTCGTTTGATGACTGGATCACAA
ACGACGATGCAGAGCACCACGGTTTCTCATCTAAGATCCGCACTTTTGTT
TCAGGAAGCACTACACGGTGTGTTGAAGTGAGGTTGAAAGATTATTCTCA
TTGGGATCACATCAACCTGGAGCAGATTCTGTTTTGGGGCTTATCGATGA
GCATCGTTGTGTTTCGATTTGCCACGATGGAGCAACTAACTCTCATGCTG
GAAGCAAGCACGCAGATCACCATGAAATACTCAGGTATGATGGACGATGT
TAAGCGTGTCTTGTTTGTCGAGACATCATCAATAGACAACGTGGGTCATC
TTAGACAAGAAGTTAAGAACGTTGCTAGCAAGAGAAGGCTGATAGAGCCA
AGAGATGAAGAAGACATTCTGTTTGAGAAAAGCTACATTTCGATTGAGAA
TATGATGGCGTATATTAGAGGACGAGGAGAGAGTATGAAAAGCATCATCA
ACAGCGACGTGACAGGCGAATCTCGTGATCTGATGATCTCTATTGCTCGC
ATCTTAAATAGGGAAGTGGCGATGGATGAAGCCATACACGAAGGTGGTGC
AGTGATGAAGTTCGCTTCCAAAATAAGAGGCAAATGGGCATCATCGAGGA
TAGAATTAGTAAGGCAAGATGGTGAAATGTTATTGTCCAATGGTGATCTG
AACGCTGGCTTCGTTATGCAGAAAGCGAATCATGTATACGACGGGGAGTA
CGTGGACTTTCGTGGAGTGCCAAGACAAAGTTCAGTCCATCTGAAGTTGA
ATCTCCGAGTTTACGGAATGCCTCATTTGTTTCGATACTCTTGGTTCAGG
AAATGGCGTGCACTTTCGGAGCTTGCTGACCTTGTCCAAGACCACAACCT
CTTCCTAGGTGTCGTTTGCGAAGAGAAGAAGACATTGAAAAGGAGTGCGG
GCGGGTCTAAGGGACGGATTGTTTCGAGTATTTCGGTACGTGCAATTGGT
GGAGGCAATTGGAATGACTACCTTCATGCAAGACTACAGTATTGTATCTT
GCAAGTCGGCGAACTCCAGAAGAAGGAAGCAAGCTGGGTGGTATTGCGAG
TTTTGCTCAAACTAATTCCGGGGCTGTCTGCGTTTTGCAGAAAGCCGTAA

protein sequence of Ggra6176.t1

>Ggra6176.t1 ID=Ggra6176.t1|Name=Ggra6176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=650bp
MAEFGLFLLEAVVGIALDRVFNPHENSALIKEVDELRSNVIGLRHQVASL
DRLIQNVTGNVPDEVLRFRRVRKNVHNRLSCFDPTLVDFATELVASLLNG
HALGFQLKVHASKKALNRGQAFETHGFEVILAASKTVTQNTMLLKDFLDD
ITQYASFQPMSKLEKPIITLNMVCGSTIDFKTLELMRYRIALRLVTLNAI
ALNWNTPGMGSLTLNNVPLSNLDDSMCKYVYNTEMDANMQVENFPNKFWS
GEFKRLTDLLRSSVESSISCFRVLILSFDDWITNDDAEHHGFSSKIRTFV
SGSTTRCVEVRLKDYSHWDHINLEQILFWGLSMSIVVFRFATMEQLTLML
EASTQITMKYSGMMDDVKRVLFVETSSIDNVGHLRQEVKNVASKRRLIEP
RDEEDILFEKSYISIENMMAYIRGRGESMKSIINSDVTGESRDLMISIAR
ILNREVAMDEAIHEGGAVMKFASKIRGKWASSRIELVRQDGEMLLSNGDL
NAGFVMQKANHVYDGEYVDFRGVPRQSSVHLKLNLRVYGMPHLFRYSWFR
KWRALSELADLVQDHNLFLGVVCEEKKTLKRSAGGSKGRIVSSISVRAIG
GGNWNDYLHARLQYCILQVGELQKKEASWVVLRVLLKLIPGLSAFCRKP*

mRNA from alignment at tig00000045_pilon:896763..898712+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6176.t1 ID=Ggra6176.t1|Name=Ggra6176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000045_pilon:896763..898712+ (Gracilaria gracilis GNS1m male)
ATGGCCGAATTTGGCCTGTTCCTTCTGGAGGCGGTTGTGGGCATAGCTCT
CGATCGCGTGTTCAATCCACATGAAAATTCGGCGCTCATCAAAGAAGTGG
ACGAACTGAGAAGCAACGTCATCGGTCTGCGACACCAGGTTGCCTCCTTG
GATCGGCTCATTCAAAACGTCACTGGAAATGTACCAGACGAGGTACTTCG
CTTTCGTAGGGTTCGCAAAAATGTCCACAATCGTTTGAGCTGCTTCGACC
CGACCTTAGTTGACTTTGCGACGGAACTCGTCGCATCATTATTGAACGGT
CATGCTCTGGGGTTTCAGCTCAAAGTCCATGCCAGTAAGAAGGCCCTCAA
TCGGGGCCAGGCTTTCGAGACACATGGATTTGAGGTCATATTGGCAGCCA
GCAAAACTGTGACGCAGAACACAATGCTTTTGAAAGACTTTTTGGATGAT
ATAACTCAATACGCTAGTTTTCAACCCATGTCGAAACTTGAAAAGCCAAT
CATTACGTTGAACATGGTTTGTGGAAGCACTATTGACTTCAAGACTCTCG
AACTCATGAGGTACCGAATTGCATTACGATTGGTTACTCTCAATGCAATC
GCGCTGAATTGGAACACTCCAGGTATGGGATCGTTGACACTTAACAACGT
ACCTCTCAGTAACCTGGACGATTCCATGTGCAAATATGTCTACAACACAG
AAATGGATGCGAACATGCAAGTCGAGAACTTCCCTAACAAGTTCTGGTCA
GGCGAATTCAAACGGCTTACAGATTTGTTAAGGAGCAGTGTTGAGTCTTC
AATCTCGTGCTTCAGGGTACTCATTCTTTCGTTTGATGACTGGATCACAA
ACGACGATGCAGAGCACCACGGTTTCTCATCTAAGATCCGCACTTTTGTT
TCAGGAAGCACTACACGGTGTGTTGAAGTGAGGTTGAAAGATTATTCTCA
TTGGGATCACATCAACCTGGAGCAGATTCTGTTTTGGGGCTTATCGATGA
GCATCGTTGTGTTTCGATTTGCCACGATGGAGCAACTAACTCTCATGCTG
GAAGCAAGCACGCAGATCACCATGAAATACTCAGGTATGATGGACGATGT
TAAGCGTGTCTTGTTTGTCGAGACATCATCAATAGACAACGTGGGTCATC
TTAGACAAGAAGTTAAGAACGTTGCTAGCAAGAGAAGGCTGATAGAGCCA
AGAGATGAAGAAGACATTCTGTTTGAGAAAAGCTACATTTCGATTGAGAA
TATGATGGCGTATATTAGAGGACGAGGAGAGAGTATGAAAAGCATCATCA
ACAGCGACGTGACAGGCGAATCTCGTGATCTGATGATCTCTATTGCTCGC
ATCTTAAATAGGGAAGTGGCGATGGATGAAGCCATACACGAAGGTGGTGC
AGTGATGAAGTTCGCTTCCAAAATAAGAGGCAAATGGGCATCATCGAGGA
TAGAATTAGTAAGGCAAGATGGTGAAATGTTATTGTCCAATGGTGATCTG
AACGCTGGCTTCGTTATGCAGAAAGCGAATCATGTATACGACGGGGAGTA
CGTGGACTTTCGTGGAGTGCCAAGACAAAGTTCAGTCCATCTGAAGTTGA
ATCTCCGAGTTTACGGAATGCCTCATTTGTTTCGATACTCTTGGTTCAGG
AAATGGCGTGCACTTTCGGAGCTTGCTGACCTTGTCCAAGACCACAACCT
CTTCCTAGGTGTCGTTTGCGAAGAGAAGAAGACATTGAAAAGGAGTGCGG
GCGGGTCTAAGGGACGGATTGTTTCGAGTATTTCGGTACGTGCAATTGGT
GGAGGCAATTGGAATGACTACCTTCATGCAAGACTACAGTATTGTATCTT
GCAAGTCGGCGAACTCCAGAAGAAGGAAGCAAGCTGGGTGGTATTGCGAG
TTTTGCTCAAACTAATTCCGGGGCTGTCTGCGTTTTGCAGAAAGCCGTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:896763..898712+

>Ggra6176.t1 ID=Ggra6176.t1|Name=Ggra6176.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1950bp|location=Sequence derived from alignment at tig00000045_pilon:896763..898712+ (Gracilaria gracilis GNS1m male)
ATGGCCGAATTTGGCCTGTTCCTTCTGGAGGCGGTTGTGGGCATAGCTCT
CGATCGCGTGTTCAATCCACATGAAAATTCGGCGCTCATCAAAGAAGTGG
ACGAACTGAGAAGCAACGTCATCGGTCTGCGACACCAGGTTGCCTCCTTG
GATCGGCTCATTCAAAACGTCACTGGAAATGTACCAGACGAGGTACTTCG
CTTTCGTAGGGTTCGCAAAAATGTCCACAATCGTTTGAGCTGCTTCGACC
CGACCTTAGTTGACTTTGCGACGGAACTCGTCGCATCATTATTGAACGGT
CATGCTCTGGGGTTTCAGCTCAAAGTCCATGCCAGTAAGAAGGCCCTCAA
TCGGGGCCAGGCTTTCGAGACACATGGATTTGAGGTCATATTGGCAGCCA
GCAAAACTGTGACGCAGAACACAATGCTTTTGAAAGACTTTTTGGATGAT
ATAACTCAATACGCTAGTTTTCAACCCATGTCGAAACTTGAAAAGCCAAT
CATTACGTTGAACATGGTTTGTGGAAGCACTATTGACTTCAAGACTCTCG
AACTCATGAGGTACCGAATTGCATTACGATTGGTTACTCTCAATGCAATC
GCGCTGAATTGGAACACTCCAGGTATGGGATCGTTGACACTTAACAACGT
ACCTCTCAGTAACCTGGACGATTCCATGTGCAAATATGTCTACAACACAG
AAATGGATGCGAACATGCAAGTCGAGAACTTCCCTAACAAGTTCTGGTCA
GGCGAATTCAAACGGCTTACAGATTTGTTAAGGAGCAGTGTTGAGTCTTC
AATCTCGTGCTTCAGGGTACTCATTCTTTCGTTTGATGACTGGATCACAA
ACGACGATGCAGAGCACCACGGTTTCTCATCTAAGATCCGCACTTTTGTT
TCAGGAAGCACTACACGGTGTGTTGAAGTGAGGTTGAAAGATTATTCTCA
TTGGGATCACATCAACCTGGAGCAGATTCTGTTTTGGGGCTTATCGATGA
GCATCGTTGTGTTTCGATTTGCCACGATGGAGCAACTAACTCTCATGCTG
GAAGCAAGCACGCAGATCACCATGAAATACTCAGGTATGATGGACGATGT
TAAGCGTGTCTTGTTTGTCGAGACATCATCAATAGACAACGTGGGTCATC
TTAGACAAGAAGTTAAGAACGTTGCTAGCAAGAGAAGGCTGATAGAGCCA
AGAGATGAAGAAGACATTCTGTTTGAGAAAAGCTACATTTCGATTGAGAA
TATGATGGCGTATATTAGAGGACGAGGAGAGAGTATGAAAAGCATCATCA
ACAGCGACGTGACAGGCGAATCTCGTGATCTGATGATCTCTATTGCTCGC
ATCTTAAATAGGGAAGTGGCGATGGATGAAGCCATACACGAAGGTGGTGC
AGTGATGAAGTTCGCTTCCAAAATAAGAGGCAAATGGGCATCATCGAGGA
TAGAATTAGTAAGGCAAGATGGTGAAATGTTATTGTCCAATGGTGATCTG
AACGCTGGCTTCGTTATGCAGAAAGCGAATCATGTATACGACGGGGAGTA
CGTGGACTTTCGTGGAGTGCCAAGACAAAGTTCAGTCCATCTGAAGTTGA
ATCTCCGAGTTTACGGAATGCCTCATTTGTTTCGATACTCTTGGTTCAGG
AAATGGCGTGCACTTTCGGAGCTTGCTGACCTTGTCCAAGACCACAACCT
CTTCCTAGGTGTCGTTTGCGAAGAGAAGAAGACATTGAAAAGGAGTGCGG
GCGGGTCTAAGGGACGGATTGTTTCGAGTATTTCGGTACGTGCAATTGGT
GGAGGCAATTGGAATGACTACCTTCATGCAAGACTACAGTATTGTATCTT
GCAAGTCGGCGAACTCCAGAAGAAGGAAGCAAGCTGGGTGGTATTGCGAG
TTTTGCTCAAACTAATTCCGGGGCTGTCTGCGTTTTGCAGAAAGCCGTAA