Ggra6174.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6174.t2
Unique NameGgra6174.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:890836..892481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog930169.B5T_01195
Preferred namehisS
PFAMsHGTP_anticodon,tRNA-synt_His
Max annot lvl135619|Oceanospirillales
KEGG rclassRC00055,RC00523
KEGG koko:K01892
KEGG ReactionR03655
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue4.07e-70
EggNOG OGsCOG0124@1|root,COG0124@2|Bacteria,1MV2K@1224|Proteobacteria,1RPHI@1236|Gammaproteobacteria,1XIK3@135619|Oceanospirillales
EC6.1.1.21
Descriptionhistidyl-tRNA synthetase
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6174Ggra6174Gracilaria gracilis GNS1m malegenetig00000045_pilon 890836..892481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6174.t2Ggra6174.t2Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 890836..892481 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6174.t2.start1Ggra6174.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 890836..890838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6174.t2.CDS1Ggra6174.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 890836..890900 +
Ggra6174.t2.CDS2Ggra6174.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 891161..892481 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6174.t2.exon1Ggra6174.t2.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 890836..890900 +
Ggra6174.t2.exon2Ggra6174.t2.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 891161..892481 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6174.t2.intron1Ggra6174.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 890901..891160 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6174.t2.stop1Ggra6174.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 892479..892481 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6174.t2 ID=Ggra6174.t2|Name=Ggra6174.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MCVNTLEAKYETVFHALTGSHGLVRGCRDILGRSASHRRHLVNSFAAVCS
VYNFQEIETPILERADLFSQSLGEGSDVISSEMYHIAETDPALALRPEGT
VGVARALKEVGLLKCAPVYGTRVWYAGPMFRRERPQKGRYRQFWQIGVEA
IGDDSIATDLDTIALAAQYLHSIQCTTKLRLNTLGNKETRQVYNDALKQF
LRSRYWALSALSRGRYDNGNCMRILDSKLPEDCDVMSTAPQLRDFVDEFE
KERFKELCSLLEEACIPFVIDNRLVRGLDYYTSTAFEFLGPEGKAVCGGG
RYRNVSGGSGVGFAIGLDRVESEQYEGNASYDRNLENGVVVIGLSRTAER
SDCKIGKTARKLVKEFRDRGIKCVGRLEGGRLSKTVGRAVRSGAEAIVVI
GEQDLDQGMARVKFVGRDCEHDPQQMRMVDVVDALHRRCRHGGSAVVEGR
NVVQSVSGVEQ*
back to top

spliced messenger RNA

>Ggra6174.t2 ID=Ggra6174.t2|Name=Ggra6174.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000045_pilon:890836..892481+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTCAACACTCTTGAAGCGAAGTACGAAACAGTGTTTCATGCTCT
AACGGGAAGTCATGGTCTGGTTCGCGGTTGCCGAGATATCTTAGGTCGCT
CCGCTTCGCATCGAAGGCACCTCGTAAACTCGTTTGCTGCAGTATGTTCT
GTCTACAACTTTCAAGAAATTGAAACGCCTATACTGGAACGAGCGGACCT
ATTTTCGCAATCTCTCGGTGAGGGCTCCGACGTGATCTCATCAGAAATGT
ATCATATCGCGGAAACAGATCCCGCGCTCGCGCTTCGCCCCGAAGGAACT
GTTGGAGTCGCTCGCGCTTTAAAGGAAGTAGGCTTGCTCAAATGTGCTCC
CGTGTATGGAACGCGTGTGTGGTACGCAGGACCGATGTTTCGTCGCGAGA
GACCTCAAAAAGGTCGCTATCGGCAGTTTTGGCAGATAGGAGTTGAAGCC
ATTGGTGACGATTCCATAGCTACAGATTTGGATACCATAGCTTTGGCTGC
ACAATATCTCCACTCCATTCAATGTACCACCAAACTCCGATTAAATACCC
TCGGAAACAAAGAAACACGGCAAGTCTATAATGATGCTCTGAAGCAGTTT
CTGCGGAGTCGTTACTGGGCGTTGTCCGCGTTAAGTCGTGGACGATATGA
CAACGGTAACTGTATGCGTATTTTGGACAGCAAGTTGCCAGAAGACTGTG
ATGTCATGTCTACCGCACCACAATTGCGAGACTTTGTTGATGAGTTCGAA
AAGGAGCGTTTCAAAGAGCTTTGCAGTCTACTGGAGGAGGCATGCATTCC
GTTCGTGATTGATAATCGATTGGTCCGGGGCCTTGATTATTATACAAGTA
CAGCTTTTGAATTCCTTGGACCGGAAGGAAAGGCTGTTTGTGGCGGTGGG
AGATACAGAAATGTGAGTGGTGGTAGTGGTGTTGGATTTGCGATCGGACT
GGATCGCGTCGAAAGCGAGCAATATGAAGGAAATGCATCATATGACCGCA
ACCTCGAAAACGGTGTGGTCGTTATCGGACTCTCTAGAACTGCTGAGCGA
AGCGATTGCAAAATCGGGAAAACAGCAAGAAAACTAGTGAAAGAGTTCAG
GGACAGGGGGATTAAGTGTGTAGGTAGATTAGAGGGAGGGAGATTGTCGA
AAACAGTAGGACGCGCGGTGCGATCAGGTGCGGAAGCAATTGTAGTGATT
GGAGAACAAGACTTGGATCAAGGCATGGCGCGAGTAAAGTTTGTCGGCCG
TGACTGTGAACATGATCCACAGCAAATGAGGATGGTAGATGTAGTAGACG
CGTTGCACAGGCGATGTAGGCACGGTGGAAGTGCGGTTGTGGAAGGGCGG
AATGTGGTGCAAAGCGTAAGCGGAGTGGAGCAATAA
back to top

protein sequence of Ggra6174.t2

>Ggra6174.t2 ID=Ggra6174.t2|Name=Ggra6174.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MCVNTLEAKYETVFHALTGSHGLVRGCRDILGRSASHRRHLVNSFAAVCS
VYNFQEIETPILERADLFSQSLGEGSDVISSEMYHIAETDPALALRPEGT
VGVARALKEVGLLKCAPVYGTRVWYAGPMFRRERPQKGRYRQFWQIGVEA
IGDDSIATDLDTIALAAQYLHSIQCTTKLRLNTLGNKETRQVYNDALKQF
LRSRYWALSALSRGRYDNGNCMRILDSKLPEDCDVMSTAPQLRDFVDEFE
KERFKELCSLLEEACIPFVIDNRLVRGLDYYTSTAFEFLGPEGKAVCGGG
RYRNVSGGSGVGFAIGLDRVESEQYEGNASYDRNLENGVVVIGLSRTAER
SDCKIGKTARKLVKEFRDRGIKCVGRLEGGRLSKTVGRAVRSGAEAIVVI
GEQDLDQGMARVKFVGRDCEHDPQQMRMVDVVDALHRRCRHGGSAVVEGR
NVVQSVSGVEQ*
back to top

mRNA from alignment at tig00000045_pilon:890836..892481+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6174.t2 ID=Ggra6174.t2|Name=Ggra6174.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1646bp|location=Sequence derived from alignment at tig00000045_pilon:890836..892481+ (Gracilaria gracilis GNS1m male)
ATGTGTGTCAACACTCTTGAAGCGAAGTACGAAACAGTGTTTCATGCTCT
AACGGGAAGTCATGGGTATGTTCTTTTCAAATATATTTTATGTTGTAAGC
CTTTCCGACTGTGGATGACGATGGCAAATCAGTATAGACGATGTTGCAAT
CGAGCCCCAGAGCGTCGGTATATCAATGGCAGGCTTATTAGCTCACTGGC
TATCACCAACCTCTCGTTTTGAGGTGGTATAGTGATTCACCGTGTTGGTG
GGTCAGTCGCCTGCAAACAAATCTCACGCTTAGCATCAGAATCAAAATCT
GACCACGTCTTAAAGTTTCAAGCAGTCTGGTTCGCGGTTGCCGAGATATC
TTAGGTCGCTCCGCTTCGCATCGAAGGCACCTCGTAAACTCGTTTGCTGC
AGTATGTTCTGTCTACAACTTTCAAGAAATTGAAACGCCTATACTGGAAC
GAGCGGACCTATTTTCGCAATCTCTCGGTGAGGGCTCCGACGTGATCTCA
TCAGAAATGTATCATATCGCGGAAACAGATCCCGCGCTCGCGCTTCGCCC
CGAAGGAACTGTTGGAGTCGCTCGCGCTTTAAAGGAAGTAGGCTTGCTCA
AATGTGCTCCCGTGTATGGAACGCGTGTGTGGTACGCAGGACCGATGTTT
CGTCGCGAGAGACCTCAAAAAGGTCGCTATCGGCAGTTTTGGCAGATAGG
AGTTGAAGCCATTGGTGACGATTCCATAGCTACAGATTTGGATACCATAG
CTTTGGCTGCACAATATCTCCACTCCATTCAATGTACCACCAAACTCCGA
TTAAATACCCTCGGAAACAAAGAAACACGGCAAGTCTATAATGATGCTCT
GAAGCAGTTTCTGCGGAGTCGTTACTGGGCGTTGTCCGCGTTAAGTCGTG
GACGATATGACAACGGTAACTGTATGCGTATTTTGGACAGCAAGTTGCCA
GAAGACTGTGATGTCATGTCTACCGCACCACAATTGCGAGACTTTGTTGA
TGAGTTCGAAAAGGAGCGTTTCAAAGAGCTTTGCAGTCTACTGGAGGAGG
CATGCATTCCGTTCGTGATTGATAATCGATTGGTCCGGGGCCTTGATTAT
TATACAAGTACAGCTTTTGAATTCCTTGGACCGGAAGGAAAGGCTGTTTG
TGGCGGTGGGAGATACAGAAATGTGAGTGGTGGTAGTGGTGTTGGATTTG
CGATCGGACTGGATCGCGTCGAAAGCGAGCAATATGAAGGAAATGCATCA
TATGACCGCAACCTCGAAAACGGTGTGGTCGTTATCGGACTCTCTAGAAC
TGCTGAGCGAAGCGATTGCAAAATCGGGAAAACAGCAAGAAAACTAGTGA
AAGAGTTCAGGGACAGGGGGATTAAGTGTGTAGGTAGATTAGAGGGAGGG
AGATTGTCGAAAACAGTAGGACGCGCGGTGCGATCAGGTGCGGAAGCAAT
TGTAGTGATTGGAGAACAAGACTTGGATCAAGGCATGGCGCGAGTAAAGT
TTGTCGGCCGTGACTGTGAACATGATCCACAGCAAATGAGGATGGTAGAT
GTAGTAGACGCGTTGCACAGGCGATGTAGGCACGGTGGAAGTGCGGTTGT
GGAAGGGCGGAATGTGGTGCAAAGCGTAAGCGGAGTGGAGCAATAA
back to top

Coding sequence (CDS) from alignment at tig00000045_pilon:890836..892481+

>Ggra6174.t2 ID=Ggra6174.t2|Name=Ggra6174.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000045_pilon:890836..892481+ (Gracilaria gracilis GNS1m male)
ATGTGTGTCAACACTCTTGAAGCGAAGTACGAAACAGTGTTTCATGCTCT
AACGGGAAGTCATGGTCTGGTTCGCGGTTGCCGAGATATCTTAGGTCGCT
CCGCTTCGCATCGAAGGCACCTCGTAAACTCGTTTGCTGCAGTATGTTCT
GTCTACAACTTTCAAGAAATTGAAACGCCTATACTGGAACGAGCGGACCT
ATTTTCGCAATCTCTCGGTGAGGGCTCCGACGTGATCTCATCAGAAATGT
ATCATATCGCGGAAACAGATCCCGCGCTCGCGCTTCGCCCCGAAGGAACT
GTTGGAGTCGCTCGCGCTTTAAAGGAAGTAGGCTTGCTCAAATGTGCTCC
CGTGTATGGAACGCGTGTGTGGTACGCAGGACCGATGTTTCGTCGCGAGA
GACCTCAAAAAGGTCGCTATCGGCAGTTTTGGCAGATAGGAGTTGAAGCC
ATTGGTGACGATTCCATAGCTACAGATTTGGATACCATAGCTTTGGCTGC
ACAATATCTCCACTCCATTCAATGTACCACCAAACTCCGATTAAATACCC
TCGGAAACAAAGAAACACGGCAAGTCTATAATGATGCTCTGAAGCAGTTT
CTGCGGAGTCGTTACTGGGCGTTGTCCGCGTTAAGTCGTGGACGATATGA
CAACGGTAACTGTATGCGTATTTTGGACAGCAAGTTGCCAGAAGACTGTG
ATGTCATGTCTACCGCACCACAATTGCGAGACTTTGTTGATGAGTTCGAA
AAGGAGCGTTTCAAAGAGCTTTGCAGTCTACTGGAGGAGGCATGCATTCC
GTTCGTGATTGATAATCGATTGGTCCGGGGCCTTGATTATTATACAAGTA
CAGCTTTTGAATTCCTTGGACCGGAAGGAAAGGCTGTTTGTGGCGGTGGG
AGATACAGAAATGTGAGTGGTGGTAGTGGTGTTGGATTTGCGATCGGACT
GGATCGCGTCGAAAGCGAGCAATATGAAGGAAATGCATCATATGACCGCA
ACCTCGAAAACGGTGTGGTCGTTATCGGACTCTCTAGAACTGCTGAGCGA
AGCGATTGCAAAATCGGGAAAACAGCAAGAAAACTAGTGAAAGAGTTCAG
GGACAGGGGGATTAAGTGTGTAGGTAGATTAGAGGGAGGGAGATTGTCGA
AAACAGTAGGACGCGCGGTGCGATCAGGTGCGGAAGCAATTGTAGTGATT
GGAGAACAAGACTTGGATCAAGGCATGGCGCGAGTAAAGTTTGTCGGCCG
TGACTGTGAACATGATCCACAGCAAATGAGGATGGTAGATGTAGTAGACG
CGTTGCACAGGCGATGTAGGCACGGTGGAAGTGCGGTTGTGGAAGGGCGG
AATGTGGTGCAAAGCGTAAGCGGAGTGGAGCAATAA
back to top