Ggra6171.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6171.t1
Unique NameGgra6171.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:879772..880719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog643562.Daes_0406
PFAMsGlycos_transf_2
Max annot lvl28221|Deltaproteobacteria
Evalue2.08e-28
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1R13V@1224|Proteobacteria,43D64@68525|delta/epsilon subdivisions,2X8CV@28221|Deltaproteobacteria,2M96X@213115|Desulfovibrionales
DescriptionPFAM Glycosyl transferase family 2
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6171Ggra6171Gracilaria gracilis GNS1m malegenetig00000045_pilon 879772..880719 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6171.t1.stop1Ggra6171.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 879772..879774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6171.t1.CDS1Ggra6171.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 879772..880719 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6171.t1.exon1Ggra6171.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 879772..880719 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6171.t1.start1Ggra6171.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 880717..880719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6171.t1Ggra6171.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 879772..880719 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6171.t1 ID=Ggra6171.t1|Name=Ggra6171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MNSFTLLPGGFRPWRSAPSSLSVPLYIVLGFFFALSYRIGTLFPRQIRSK
SKHETFFRSKLVSKGHPLDLSLAVVIPVFTASNDEKELLEATVDIITSSG
GYEVIVVDDCSPFPPCPKKCTLVRHLNNQGPGGARYTGVKIALESGVHSI
AFLDSDCIPTPNWAEEHAKLQKMLPGIWAGRTFSHGHSRIDQFHERNGTL
MPFIRNGNIDDVYFAPTCNLSVSAEIAKHVPFDTAFPMSFEDFDFCLRAA
KLSYQIRISRKPMLQHRFKTSFLGFCRQAWKYGRSEKNMTDKHPSFIGDM
STCNNVALLWAEIQH*
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spliced messenger RNA

>Ggra6171.t1 ID=Ggra6171.t1|Name=Ggra6171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000045_pilon:879772..880719- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCATTCACTCTGCTGCCTGGAGGTTTTCGACCTTGGCGTTCTGC
GCCCAGCAGCTTGTCCGTGCCGTTGTACATCGTTCTTGGATTTTTTTTCG
CACTTTCTTATCGAATTGGCACACTATTTCCTCGTCAAATAAGATCCAAA
TCCAAACATGAAACGTTCTTCAGGTCAAAGCTTGTCTCCAAAGGTCACCC
TCTTGATTTGAGTCTAGCAGTCGTGATCCCGGTCTTCACTGCATCCAATG
ACGAAAAGGAACTGTTAGAAGCTACCGTTGATATCATTACGTCCAGTGGT
GGCTATGAGGTTATTGTCGTTGATGACTGTTCACCGTTTCCCCCGTGCCC
CAAGAAATGCACCCTAGTTCGCCATTTGAACAATCAGGGCCCAGGGGGTG
CAAGGTACACGGGTGTGAAAATCGCCCTAGAAAGTGGCGTGCATAGCATT
GCGTTCTTGGACAGCGACTGCATTCCGACACCCAACTGGGCTGAGGAACA
CGCCAAGTTACAAAAGATGCTGCCCGGAATCTGGGCTGGGCGCACTTTTT
CACATGGCCATTCCAGAATAGATCAGTTTCATGAACGAAATGGCACGTTA
ATGCCATTCATTCGCAATGGGAACATTGATGATGTGTATTTTGCCCCCAC
TTGCAATCTTTCTGTGTCCGCTGAGATAGCAAAACACGTTCCGTTTGACA
CAGCCTTTCCAATGTCCTTTGAAGACTTTGACTTTTGTCTTCGTGCTGCT
AAGCTTAGCTACCAAATTCGTATATCGAGAAAGCCGATGTTACAACACAG
ATTCAAGACTAGTTTCCTAGGTTTTTGCCGACAAGCATGGAAGTATGGGC
GATCGGAGAAGAATATGACCGACAAGCATCCATCATTTATTGGAGACATG
TCGACTTGTAATAATGTTGCTTTGCTCTGGGCAGAAATTCAACACTGA
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protein sequence of Ggra6171.t1

>Ggra6171.t1 ID=Ggra6171.t1|Name=Ggra6171.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MNSFTLLPGGFRPWRSAPSSLSVPLYIVLGFFFALSYRIGTLFPRQIRSK
SKHETFFRSKLVSKGHPLDLSLAVVIPVFTASNDEKELLEATVDIITSSG
GYEVIVVDDCSPFPPCPKKCTLVRHLNNQGPGGARYTGVKIALESGVHSI
AFLDSDCIPTPNWAEEHAKLQKMLPGIWAGRTFSHGHSRIDQFHERNGTL
MPFIRNGNIDDVYFAPTCNLSVSAEIAKHVPFDTAFPMSFEDFDFCLRAA
KLSYQIRISRKPMLQHRFKTSFLGFCRQAWKYGRSEKNMTDKHPSFIGDM
STCNNVALLWAEIQH*
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mRNA from alignment at tig00000045_pilon:879772..880719-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6171.t1 ID=Ggra6171.t1|Name=Ggra6171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000045_pilon:879772..880719- (Gracilaria gracilis GNS1m male)
ATGAACTCATTCACTCTGCTGCCTGGAGGTTTTCGACCTTGGCGTTCTGC
GCCCAGCAGCTTGTCCGTGCCGTTGTACATCGTTCTTGGATTTTTTTTCG
CACTTTCTTATCGAATTGGCACACTATTTCCTCGTCAAATAAGATCCAAA
TCCAAACATGAAACGTTCTTCAGGTCAAAGCTTGTCTCCAAAGGTCACCC
TCTTGATTTGAGTCTAGCAGTCGTGATCCCGGTCTTCACTGCATCCAATG
ACGAAAAGGAACTGTTAGAAGCTACCGTTGATATCATTACGTCCAGTGGT
GGCTATGAGGTTATTGTCGTTGATGACTGTTCACCGTTTCCCCCGTGCCC
CAAGAAATGCACCCTAGTTCGCCATTTGAACAATCAGGGCCCAGGGGGTG
CAAGGTACACGGGTGTGAAAATCGCCCTAGAAAGTGGCGTGCATAGCATT
GCGTTCTTGGACAGCGACTGCATTCCGACACCCAACTGGGCTGAGGAACA
CGCCAAGTTACAAAAGATGCTGCCCGGAATCTGGGCTGGGCGCACTTTTT
CACATGGCCATTCCAGAATAGATCAGTTTCATGAACGAAATGGCACGTTA
ATGCCATTCATTCGCAATGGGAACATTGATGATGTGTATTTTGCCCCCAC
TTGCAATCTTTCTGTGTCCGCTGAGATAGCAAAACACGTTCCGTTTGACA
CAGCCTTTCCAATGTCCTTTGAAGACTTTGACTTTTGTCTTCGTGCTGCT
AAGCTTAGCTACCAAATTCGTATATCGAGAAAGCCGATGTTACAACACAG
ATTCAAGACTAGTTTCCTAGGTTTTTGCCGACAAGCATGGAAGTATGGGC
GATCGGAGAAGAATATGACCGACAAGCATCCATCATTTATTGGAGACATG
TCGACTTGTAATAATGTTGCTTTGCTCTGGGCAGAAATTCAACACTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:879772..880719-

>Ggra6171.t1 ID=Ggra6171.t1|Name=Ggra6171.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000045_pilon:879772..880719- (Gracilaria gracilis GNS1m male)
ATGAACTCATTCACTCTGCTGCCTGGAGGTTTTCGACCTTGGCGTTCTGC
GCCCAGCAGCTTGTCCGTGCCGTTGTACATCGTTCTTGGATTTTTTTTCG
CACTTTCTTATCGAATTGGCACACTATTTCCTCGTCAAATAAGATCCAAA
TCCAAACATGAAACGTTCTTCAGGTCAAAGCTTGTCTCCAAAGGTCACCC
TCTTGATTTGAGTCTAGCAGTCGTGATCCCGGTCTTCACTGCATCCAATG
ACGAAAAGGAACTGTTAGAAGCTACCGTTGATATCATTACGTCCAGTGGT
GGCTATGAGGTTATTGTCGTTGATGACTGTTCACCGTTTCCCCCGTGCCC
CAAGAAATGCACCCTAGTTCGCCATTTGAACAATCAGGGCCCAGGGGGTG
CAAGGTACACGGGTGTGAAAATCGCCCTAGAAAGTGGCGTGCATAGCATT
GCGTTCTTGGACAGCGACTGCATTCCGACACCCAACTGGGCTGAGGAACA
CGCCAAGTTACAAAAGATGCTGCCCGGAATCTGGGCTGGGCGCACTTTTT
CACATGGCCATTCCAGAATAGATCAGTTTCATGAACGAAATGGCACGTTA
ATGCCATTCATTCGCAATGGGAACATTGATGATGTGTATTTTGCCCCCAC
TTGCAATCTTTCTGTGTCCGCTGAGATAGCAAAACACGTTCCGTTTGACA
CAGCCTTTCCAATGTCCTTTGAAGACTTTGACTTTTGTCTTCGTGCTGCT
AAGCTTAGCTACCAAATTCGTATATCGAGAAAGCCGATGTTACAACACAG
ATTCAAGACTAGTTTCCTAGGTTTTTGCCGACAAGCATGGAAGTATGGGC
GATCGGAGAAGAATATGACCGACAAGCATCCATCATTTATTGGAGACATG
TCGACTTGTAATAATGTTGCTTTGCTCTGGGCAGAAATTCAACACTGA
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