Ggra6167.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6167.t1
Unique NameGgra6167.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:761166..761840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10116.ENSRNOP00000016792
Preferred nameTMEM66
PFAMsSARAF
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
Evalue1.22e-18
EggNOG OGs28KQW@1|root,2QT6Y@2759|Eukaryota,38PN7@33154|Opisthokonta,3BDYH@33208|Metazoa,3CSU9@33213|Bilateria,489E2@7711|Chordata,497RR@7742|Vertebrata,3JF3W@40674|Mammalia,35C4Y@314146|Euarchontoglires,4Q40U@9989|Rodentia
DescriptionStore-operated calcium entry-associated regulatory factor
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6167Ggra6167Gracilaria gracilis GNS1m malegenetig00000045_pilon 761166..761840 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6167.t1.stop1Ggra6167.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 761166..761168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6167.t1.CDS1Ggra6167.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 761166..761840 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6167.t1.exon1Ggra6167.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 761166..761840 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6167.t1.start1Ggra6167.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 761838..761840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6167.t1Ggra6167.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 761166..761840 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6167.t1 ID=Ggra6167.t1|Name=Ggra6167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=225bp
MQSSSLLAIYLFVSLATSLASGTEHKGNAFGGSSPNPDRIYLPGVVKLSF
VAHTYTTPRRTAPRPELTCIGGEASDRTDLYPSRVDCYNAGVDPDANGEP
IPRWECVGAVDRSVVVDKWSVNCEGWSFDRDLFIVKGSCWLEYKLSFSHH
GSAPTTMDSVADGGSTASGTSVHQWFLHVLWNIILLVVVVSGVAFCFFRP
ETPLSAEREPLVNAQQNYAATAGT*
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spliced messenger RNA

>Ggra6167.t1 ID=Ggra6167.t1|Name=Ggra6167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000045_pilon:761166..761840- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCCTCCTCGCTTCTAGCCATTTACCTTTTTGTATCATTGGCTAC
CTCGTTGGCATCTGGCACTGAGCACAAAGGCAATGCTTTCGGTGGCTCTT
CGCCCAATCCCGACCGCATCTACTTGCCGGGTGTGGTCAAGCTTTCATTT
GTCGCACATACCTACACCACTCCCCGTCGAACAGCGCCACGCCCCGAACT
CACATGTATCGGCGGAGAGGCAAGCGACCGTACTGACCTGTATCCATCGC
GCGTGGACTGCTACAATGCTGGTGTAGATCCCGATGCAAATGGGGAACCA
ATTCCGAGATGGGAATGTGTTGGCGCCGTCGACAGGAGCGTTGTTGTTGA
CAAATGGTCCGTCAACTGCGAGGGCTGGAGCTTCGACCGTGATCTTTTCA
TCGTCAAAGGGAGTTGTTGGCTCGAGTACAAATTGTCGTTTTCTCATCAT
GGTTCCGCTCCGACTACGATGGACAGCGTCGCGGATGGAGGGAGCACGGC
CAGCGGAACAAGTGTGCACCAATGGTTTCTGCACGTGTTGTGGAATATTA
TACTTCTTGTGGTCGTCGTCAGTGGAGTCGCGTTTTGCTTTTTCCGCCCC
GAAACCCCGCTTTCTGCAGAACGGGAGCCACTCGTTAACGCTCAGCAGAA
CTACGCCGCCACCGCCGGAACATAG
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protein sequence of Ggra6167.t1

>Ggra6167.t1 ID=Ggra6167.t1|Name=Ggra6167.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=225bp
MQSSSLLAIYLFVSLATSLASGTEHKGNAFGGSSPNPDRIYLPGVVKLSF
VAHTYTTPRRTAPRPELTCIGGEASDRTDLYPSRVDCYNAGVDPDANGEP
IPRWECVGAVDRSVVVDKWSVNCEGWSFDRDLFIVKGSCWLEYKLSFSHH
GSAPTTMDSVADGGSTASGTSVHQWFLHVLWNIILLVVVVSGVAFCFFRP
ETPLSAEREPLVNAQQNYAATAGT*
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mRNA from alignment at tig00000045_pilon:761166..761840-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6167.t1 ID=Ggra6167.t1|Name=Ggra6167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000045_pilon:761166..761840- (Gracilaria gracilis GNS1m male)
ATGCAATCCTCCTCGCTTCTAGCCATTTACCTTTTTGTATCATTGGCTAC
CTCGTTGGCATCTGGCACTGAGCACAAAGGCAATGCTTTCGGTGGCTCTT
CGCCCAATCCCGACCGCATCTACTTGCCGGGTGTGGTCAAGCTTTCATTT
GTCGCACATACCTACACCACTCCCCGTCGAACAGCGCCACGCCCCGAACT
CACATGTATCGGCGGAGAGGCAAGCGACCGTACTGACCTGTATCCATCGC
GCGTGGACTGCTACAATGCTGGTGTAGATCCCGATGCAAATGGGGAACCA
ATTCCGAGATGGGAATGTGTTGGCGCCGTCGACAGGAGCGTTGTTGTTGA
CAAATGGTCCGTCAACTGCGAGGGCTGGAGCTTCGACCGTGATCTTTTCA
TCGTCAAAGGGAGTTGTTGGCTCGAGTACAAATTGTCGTTTTCTCATCAT
GGTTCCGCTCCGACTACGATGGACAGCGTCGCGGATGGAGGGAGCACGGC
CAGCGGAACAAGTGTGCACCAATGGTTTCTGCACGTGTTGTGGAATATTA
TACTTCTTGTGGTCGTCGTCAGTGGAGTCGCGTTTTGCTTTTTCCGCCCC
GAAACCCCGCTTTCTGCAGAACGGGAGCCACTCGTTAACGCTCAGCAGAA
CTACGCCGCCACCGCCGGAACATAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:761166..761840-

>Ggra6167.t1 ID=Ggra6167.t1|Name=Ggra6167.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=675bp|location=Sequence derived from alignment at tig00000045_pilon:761166..761840- (Gracilaria gracilis GNS1m male)
ATGCAATCCTCCTCGCTTCTAGCCATTTACCTTTTTGTATCATTGGCTAC
CTCGTTGGCATCTGGCACTGAGCACAAAGGCAATGCTTTCGGTGGCTCTT
CGCCCAATCCCGACCGCATCTACTTGCCGGGTGTGGTCAAGCTTTCATTT
GTCGCACATACCTACACCACTCCCCGTCGAACAGCGCCACGCCCCGAACT
CACATGTATCGGCGGAGAGGCAAGCGACCGTACTGACCTGTATCCATCGC
GCGTGGACTGCTACAATGCTGGTGTAGATCCCGATGCAAATGGGGAACCA
ATTCCGAGATGGGAATGTGTTGGCGCCGTCGACAGGAGCGTTGTTGTTGA
CAAATGGTCCGTCAACTGCGAGGGCTGGAGCTTCGACCGTGATCTTTTCA
TCGTCAAAGGGAGTTGTTGGCTCGAGTACAAATTGTCGTTTTCTCATCAT
GGTTCCGCTCCGACTACGATGGACAGCGTCGCGGATGGAGGGAGCACGGC
CAGCGGAACAAGTGTGCACCAATGGTTTCTGCACGTGTTGTGGAATATTA
TACTTCTTGTGGTCGTCGTCAGTGGAGTCGCGTTTTGCTTTTTCCGCCCC
GAAACCCCGCTTTCTGCAGAACGGGAGCCACTCGTTAACGCTCAGCAGAA
CTACGCCGCCACCGCCGGAACATAG
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