Ggra6166.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6166.t1
Unique Name	Ggra6166.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	749

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:758708..760954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005648994.1
PFAMs	Kinesin
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K10395
Evalue	1.77e-78
EggNOG OGs	COG5059@1\|root,KOG0244@2759\|Eukaryota,37KZU@33090\|Viridiplantae,34KPW@3041\|Chlorophyta
Description	Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
COG category	Z
BRITE	ko00000,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6166	Ggra6166	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 758708..760954 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6166.t1.start1	Ggra6166.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 758708..758710 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6166.t1.CDS1	Ggra6166.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 758708..760954 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6166.t1.exon1	Ggra6166.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 758708..760954 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6166.t1.stop1	Ggra6166.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 760952..760954 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6166.t1	Ggra6166.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 758708..760954 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:758708..760954+
coding sequence from alignment at tig00000045_pilon:758708..760954+

mRNA sequence

>Ggra6166.t1 ID=Ggra6166.t1|Name=Ggra6166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=749bp
MGADARRQQKQSPPPRPEAVRVVVNIRPLLPFELAHNAASALSHQPSPPR
VTLQRRAAPAATFAQFDAVYAAAHARTPDALYQRHVQPMLASLFAGVNVT
VLAYGQTSAGKSFTMAHLTDAVAADVFRLKAAAEHARRTVVVRVGFVEIY
KESIRDLVDANSAPAVPVRVRERRVKAHRHVFLDGARERCVHNQHALAAI
IRDGNVVRRTAATGMNACSSRSHSVITITVQQESDGNECLFSKLHLVDLA
GSERVKRTAAQGARFEEGVQINKGLFALAKVISALADNVPHVPYRDSNLT
RLLQDSLGGNAKTLLVACVSPADSSREETLGTLRYAARAKRIQNKPVVNT
EPDSVEISDLRAALARARSQIATLVAENERLKGRRKRAASPRSPLSNATA
VLNHVHSSAASPKRVEATAGRDDVLVSGLRQRIAELENVLDVSGIVLRKG
TQSPLKKIRHVGVSSLPASRELDGRAPKRRPRALREPSSKAASFDAQGSE
KREIVVGRTQSEKILPAARRNFANRSPQIRVEHEAAESSGYEDELETKVV
NVLSAHRMDEMKRTFAERLQQAEEDKTAIDTARLKLVKRLSSIHKKHEKD
VEELKSAHQTQMMEMRSRLAEVKRLEAESIRMCKMRDGSDAARKKLVAKV
ESAEKSRDEAISRLADVVSRSEVLKRNLSKENRELSKNERMMKVELNRLK
ITSARQQALVNRLRLENETMRIRLRDIGRQHVRRANSGITPTTTRAQC*

spliced messenger RNA

>Ggra6166.t1 ID=Ggra6166.t1|Name=Ggra6166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00000045_pilon:758708..760954+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCGACGCACGCAGACAACAAAAACAGTCGCCGCCGCCGCGACC
CGAGGCCGTGCGCGTCGTCGTCAACATCAGACCGCTGCTGCCGTTCGAGC
TGGCGCACAATGCCGCAAGCGCGCTCTCGCACCAGCCCAGCCCGCCGCGC
GTCACGCTGCAGCGCCGCGCCGCGCCGGCCGCCACCTTTGCGCAGTTCGA
CGCCGTGTACGCCGCCGCGCACGCGCGCACTCCCGACGCGCTGTACCAGC
GCCACGTGCAGCCCATGCTGGCGTCGCTCTTCGCGGGCGTCAACGTCACC
GTGCTGGCGTACGGCCAGACCAGCGCGGGAAAGAGCTTCACCATGGCGCA
TCTCACAGACGCCGTCGCTGCGGACGTTTTCCGCCTCAAGGCCGCCGCCG
AGCACGCGCGCCGCACCGTCGTCGTGCGCGTCGGCTTTGTGGAGATCTAC
AAGGAGAGCATCCGCGATCTCGTTGACGCCAACTCCGCCCCCGCCGTGCC
GGTGCGCGTGCGCGAGCGCCGCGTCAAGGCGCACAGACATGTGTTCCTGG
ACGGCGCCAGGGAGCGCTGCGTGCACAATCAGCACGCGCTCGCAGCCATC
ATTCGCGACGGCAATGTGGTGCGACGCACCGCTGCCACGGGCATGAACGC
GTGCTCGTCGCGCAGCCATTCCGTCATCACCATCACCGTGCAGCAAGAGA
GCGACGGCAACGAGTGCCTCTTCTCCAAGCTGCACCTGGTCGACCTGGCG
GGCAGCGAGCGCGTCAAGCGCACCGCCGCGCAGGGCGCCCGCTTTGAAGA
AGGCGTGCAGATCAACAAGGGCCTGTTCGCGCTGGCAAAGGTCATATCCG
CCTTGGCGGACAATGTGCCACACGTTCCGTACCGCGACAGCAACCTCACC
CGCCTGCTGCAGGACAGCCTGGGCGGAAATGCAAAGACGCTCTTGGTTGC
GTGCGTGTCGCCGGCCGATTCCAGCCGCGAGGAAACGCTGGGCACGCTAC
GATACGCCGCGCGTGCCAAGCGTATCCAGAACAAGCCCGTCGTCAATACC
GAGCCGGATAGCGTGGAGATTTCCGACTTGCGCGCCGCGCTTGCCAGGGC
CCGCTCCCAGATTGCCACCCTGGTTGCGGAGAATGAGAGGCTCAAAGGCA
GGCGCAAACGCGCTGCCTCGCCTCGATCACCGCTGTCAAATGCTACCGCT
GTGCTTAATCACGTGCACAGCAGCGCCGCCAGTCCGAAACGAGTCGAGGC
CACTGCTGGCAGGGATGATGTGCTTGTGAGTGGATTGAGGCAACGCATTG
CCGAGCTTGAGAACGTTTTGGACGTGTCCGGTATTGTGCTGCGCAAAGGC
ACGCAGAGCCCGTTGAAGAAGATTCGACATGTTGGCGTTTCTTCCTTGCC
CGCTTCGAGGGAGCTTGATGGCAGAGCGCCGAAGAGACGGCCGCGTGCGC
TCAGAGAGCCATCATCGAAGGCTGCCAGTTTTGATGCGCAAGGCAGTGAG
AAGCGAGAGATTGTTGTCGGACGCACGCAGTCGGAGAAGATTCTACCGGC
AGCAAGACGCAATTTTGCGAATCGTTCTCCTCAGATTAGAGTGGAGCACG
AGGCAGCTGAGTCTAGTGGATACGAAGATGAACTCGAGACGAAGGTTGTC
AATGTTTTGTCGGCTCATCGCATGGATGAGATGAAGCGAACTTTTGCGGA
ACGGTTGCAACAGGCCGAGGAAGACAAGACGGCCATAGATACTGCAAGGC
TGAAACTTGTGAAGCGATTGTCATCAATCCATAAGAAGCATGAGAAGGAT
GTTGAGGAGCTTAAGAGTGCTCATCAGACGCAGATGATGGAGATGAGATC
TCGATTGGCCGAAGTGAAGAGGTTGGAGGCGGAAAGCATTCGTATGTGTA
AGATGCGCGATGGTAGTGATGCTGCTCGAAAGAAGCTTGTGGCAAAAGTC
GAGTCGGCAGAAAAATCTCGCGATGAAGCTATATCACGATTGGCTGACGT
TGTGAGTCGCTCGGAAGTGCTAAAGAGAAATTTGTCAAAGGAGAACAGAG
AGCTGTCCAAGAATGAACGCATGATGAAAGTGGAGTTGAATCGTCTCAAG
ATAACTTCAGCGAGACAACAAGCGCTTGTGAATCGTCTGAGATTGGAGAA
TGAGACGATGAGAATTCGCTTGCGTGATATTGGTCGACAACACGTTCGCC
GTGCTAATTCTGGAATCACCCCTACTACCACTCGAGCTCAGTGCTGA

protein sequence of Ggra6166.t1

>Ggra6166.t1 ID=Ggra6166.t1|Name=Ggra6166.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=749bp
MGADARRQQKQSPPPRPEAVRVVVNIRPLLPFELAHNAASALSHQPSPPR
VTLQRRAAPAATFAQFDAVYAAAHARTPDALYQRHVQPMLASLFAGVNVT
VLAYGQTSAGKSFTMAHLTDAVAADVFRLKAAAEHARRTVVVRVGFVEIY
KESIRDLVDANSAPAVPVRVRERRVKAHRHVFLDGARERCVHNQHALAAI
IRDGNVVRRTAATGMNACSSRSHSVITITVQQESDGNECLFSKLHLVDLA
GSERVKRTAAQGARFEEGVQINKGLFALAKVISALADNVPHVPYRDSNLT
RLLQDSLGGNAKTLLVACVSPADSSREETLGTLRYAARAKRIQNKPVVNT
EPDSVEISDLRAALARARSQIATLVAENERLKGRRKRAASPRSPLSNATA
VLNHVHSSAASPKRVEATAGRDDVLVSGLRQRIAELENVLDVSGIVLRKG
TQSPLKKIRHVGVSSLPASRELDGRAPKRRPRALREPSSKAASFDAQGSE
KREIVVGRTQSEKILPAARRNFANRSPQIRVEHEAAESSGYEDELETKVV
NVLSAHRMDEMKRTFAERLQQAEEDKTAIDTARLKLVKRLSSIHKKHEKD
VEELKSAHQTQMMEMRSRLAEVKRLEAESIRMCKMRDGSDAARKKLVAKV
ESAEKSRDEAISRLADVVSRSEVLKRNLSKENRELSKNERMMKVELNRLK
ITSARQQALVNRLRLENETMRIRLRDIGRQHVRRANSGITPTTTRAQC*

mRNA from alignment at tig00000045_pilon:758708..760954+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6166.t1 ID=Ggra6166.t1|Name=Ggra6166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2247bp|location=Sequence derived from alignment at tig00000045_pilon:758708..760954+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGACGCACGCAGACAACAAAAACAGTCGCCGCCGCCGCGACC
CGAGGCCGTGCGCGTCGTCGTCAACATCAGACCGCTGCTGCCGTTCGAGC
TGGCGCACAATGCCGCAAGCGCGCTCTCGCACCAGCCCAGCCCGCCGCGC
GTCACGCTGCAGCGCCGCGCCGCGCCGGCCGCCACCTTTGCGCAGTTCGA
CGCCGTGTACGCCGCCGCGCACGCGCGCACTCCCGACGCGCTGTACCAGC
GCCACGTGCAGCCCATGCTGGCGTCGCTCTTCGCGGGCGTCAACGTCACC
GTGCTGGCGTACGGCCAGACCAGCGCGGGAAAGAGCTTCACCATGGCGCA
TCTCACAGACGCCGTCGCTGCGGACGTTTTCCGCCTCAAGGCCGCCGCCG
AGCACGCGCGCCGCACCGTCGTCGTGCGCGTCGGCTTTGTGGAGATCTAC
AAGGAGAGCATCCGCGATCTCGTTGACGCCAACTCCGCCCCCGCCGTGCC
GGTGCGCGTGCGCGAGCGCCGCGTCAAGGCGCACAGACATGTGTTCCTGG
ACGGCGCCAGGGAGCGCTGCGTGCACAATCAGCACGCGCTCGCAGCCATC
ATTCGCGACGGCAATGTGGTGCGACGCACCGCTGCCACGGGCATGAACGC
GTGCTCGTCGCGCAGCCATTCCGTCATCACCATCACCGTGCAGCAAGAGA
GCGACGGCAACGAGTGCCTCTTCTCCAAGCTGCACCTGGTCGACCTGGCG
GGCAGCGAGCGCGTCAAGCGCACCGCCGCGCAGGGCGCCCGCTTTGAAGA
AGGCGTGCAGATCAACAAGGGCCTGTTCGCGCTGGCAAAGGTCATATCCG
CCTTGGCGGACAATGTGCCACACGTTCCGTACCGCGACAGCAACCTCACC
CGCCTGCTGCAGGACAGCCTGGGCGGAAATGCAAAGACGCTCTTGGTTGC
GTGCGTGTCGCCGGCCGATTCCAGCCGCGAGGAAACGCTGGGCACGCTAC
GATACGCCGCGCGTGCCAAGCGTATCCAGAACAAGCCCGTCGTCAATACC
GAGCCGGATAGCGTGGAGATTTCCGACTTGCGCGCCGCGCTTGCCAGGGC
CCGCTCCCAGATTGCCACCCTGGTTGCGGAGAATGAGAGGCTCAAAGGCA
GGCGCAAACGCGCTGCCTCGCCTCGATCACCGCTGTCAAATGCTACCGCT
GTGCTTAATCACGTGCACAGCAGCGCCGCCAGTCCGAAACGAGTCGAGGC
CACTGCTGGCAGGGATGATGTGCTTGTGAGTGGATTGAGGCAACGCATTG
CCGAGCTTGAGAACGTTTTGGACGTGTCCGGTATTGTGCTGCGCAAAGGC
ACGCAGAGCCCGTTGAAGAAGATTCGACATGTTGGCGTTTCTTCCTTGCC
CGCTTCGAGGGAGCTTGATGGCAGAGCGCCGAAGAGACGGCCGCGTGCGC
TCAGAGAGCCATCATCGAAGGCTGCCAGTTTTGATGCGCAAGGCAGTGAG
AAGCGAGAGATTGTTGTCGGACGCACGCAGTCGGAGAAGATTCTACCGGC
AGCAAGACGCAATTTTGCGAATCGTTCTCCTCAGATTAGAGTGGAGCACG
AGGCAGCTGAGTCTAGTGGATACGAAGATGAACTCGAGACGAAGGTTGTC
AATGTTTTGTCGGCTCATCGCATGGATGAGATGAAGCGAACTTTTGCGGA
ACGGTTGCAACAGGCCGAGGAAGACAAGACGGCCATAGATACTGCAAGGC
TGAAACTTGTGAAGCGATTGTCATCAATCCATAAGAAGCATGAGAAGGAT
GTTGAGGAGCTTAAGAGTGCTCATCAGACGCAGATGATGGAGATGAGATC
TCGATTGGCCGAAGTGAAGAGGTTGGAGGCGGAAAGCATTCGTATGTGTA
AGATGCGCGATGGTAGTGATGCTGCTCGAAAGAAGCTTGTGGCAAAAGTC
GAGTCGGCAGAAAAATCTCGCGATGAAGCTATATCACGATTGGCTGACGT
TGTGAGTCGCTCGGAAGTGCTAAAGAGAAATTTGTCAAAGGAGAACAGAG
AGCTGTCCAAGAATGAACGCATGATGAAAGTGGAGTTGAATCGTCTCAAG
ATAACTTCAGCGAGACAACAAGCGCTTGTGAATCGTCTGAGATTGGAGAA
TGAGACGATGAGAATTCGCTTGCGTGATATTGGTCGACAACACGTTCGCC
GTGCTAATTCTGGAATCACCCCTACTACCACTCGAGCTCAGTGCTGA

Coding sequence (CDS) from alignment at tig00000045_pilon:758708..760954+

>Ggra6166.t1 ID=Ggra6166.t1|Name=Ggra6166.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2247bp|location=Sequence derived from alignment at tig00000045_pilon:758708..760954+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGACGCACGCAGACAACAAAAACAGTCGCCGCCGCCGCGACC
CGAGGCCGTGCGCGTCGTCGTCAACATCAGACCGCTGCTGCCGTTCGAGC
TGGCGCACAATGCCGCAAGCGCGCTCTCGCACCAGCCCAGCCCGCCGCGC
GTCACGCTGCAGCGCCGCGCCGCGCCGGCCGCCACCTTTGCGCAGTTCGA
CGCCGTGTACGCCGCCGCGCACGCGCGCACTCCCGACGCGCTGTACCAGC
GCCACGTGCAGCCCATGCTGGCGTCGCTCTTCGCGGGCGTCAACGTCACC
GTGCTGGCGTACGGCCAGACCAGCGCGGGAAAGAGCTTCACCATGGCGCA
TCTCACAGACGCCGTCGCTGCGGACGTTTTCCGCCTCAAGGCCGCCGCCG
AGCACGCGCGCCGCACCGTCGTCGTGCGCGTCGGCTTTGTGGAGATCTAC
AAGGAGAGCATCCGCGATCTCGTTGACGCCAACTCCGCCCCCGCCGTGCC
GGTGCGCGTGCGCGAGCGCCGCGTCAAGGCGCACAGACATGTGTTCCTGG
ACGGCGCCAGGGAGCGCTGCGTGCACAATCAGCACGCGCTCGCAGCCATC
ATTCGCGACGGCAATGTGGTGCGACGCACCGCTGCCACGGGCATGAACGC
GTGCTCGTCGCGCAGCCATTCCGTCATCACCATCACCGTGCAGCAAGAGA
GCGACGGCAACGAGTGCCTCTTCTCCAAGCTGCACCTGGTCGACCTGGCG
GGCAGCGAGCGCGTCAAGCGCACCGCCGCGCAGGGCGCCCGCTTTGAAGA
AGGCGTGCAGATCAACAAGGGCCTGTTCGCGCTGGCAAAGGTCATATCCG
CCTTGGCGGACAATGTGCCACACGTTCCGTACCGCGACAGCAACCTCACC
CGCCTGCTGCAGGACAGCCTGGGCGGAAATGCAAAGACGCTCTTGGTTGC
GTGCGTGTCGCCGGCCGATTCCAGCCGCGAGGAAACGCTGGGCACGCTAC
GATACGCCGCGCGTGCCAAGCGTATCCAGAACAAGCCCGTCGTCAATACC
GAGCCGGATAGCGTGGAGATTTCCGACTTGCGCGCCGCGCTTGCCAGGGC
CCGCTCCCAGATTGCCACCCTGGTTGCGGAGAATGAGAGGCTCAAAGGCA
GGCGCAAACGCGCTGCCTCGCCTCGATCACCGCTGTCAAATGCTACCGCT
GTGCTTAATCACGTGCACAGCAGCGCCGCCAGTCCGAAACGAGTCGAGGC
CACTGCTGGCAGGGATGATGTGCTTGTGAGTGGATTGAGGCAACGCATTG
CCGAGCTTGAGAACGTTTTGGACGTGTCCGGTATTGTGCTGCGCAAAGGC
ACGCAGAGCCCGTTGAAGAAGATTCGACATGTTGGCGTTTCTTCCTTGCC
CGCTTCGAGGGAGCTTGATGGCAGAGCGCCGAAGAGACGGCCGCGTGCGC
TCAGAGAGCCATCATCGAAGGCTGCCAGTTTTGATGCGCAAGGCAGTGAG
AAGCGAGAGATTGTTGTCGGACGCACGCAGTCGGAGAAGATTCTACCGGC
AGCAAGACGCAATTTTGCGAATCGTTCTCCTCAGATTAGAGTGGAGCACG
AGGCAGCTGAGTCTAGTGGATACGAAGATGAACTCGAGACGAAGGTTGTC
AATGTTTTGTCGGCTCATCGCATGGATGAGATGAAGCGAACTTTTGCGGA
ACGGTTGCAACAGGCCGAGGAAGACAAGACGGCCATAGATACTGCAAGGC
TGAAACTTGTGAAGCGATTGTCATCAATCCATAAGAAGCATGAGAAGGAT
GTTGAGGAGCTTAAGAGTGCTCATCAGACGCAGATGATGGAGATGAGATC
TCGATTGGCCGAAGTGAAGAGGTTGGAGGCGGAAAGCATTCGTATGTGTA
AGATGCGCGATGGTAGTGATGCTGCTCGAAAGAAGCTTGTGGCAAAAGTC
GAGTCGGCAGAAAAATCTCGCGATGAAGCTATATCACGATTGGCTGACGT
TGTGAGTCGCTCGGAAGTGCTAAAGAGAAATTTGTCAAAGGAGAACAGAG
AGCTGTCCAAGAATGAACGCATGATGAAAGTGGAGTTGAATCGTCTCAAG
ATAACTTCAGCGAGACAACAAGCGCTTGTGAATCGTCTGAGATTGGAGAA
TGAGACGATGAGAATTCGCTTGCGTGATATTGGTCGACAACACGTTCGCC
GTGCTAATTCTGGAATCACCCCTACTACCACTCGAGCTCAGTGCTGA