Ggra6165.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6165.t1
Unique Name	Ggra6165.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	696

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:756097..758184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	3.55e-20
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6165	Ggra6165	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 756097..758184 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6165.t1.start1	Ggra6165.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 756097..756099 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6165.t1.CDS1	Ggra6165.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 756097..758184 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6165.t1.exon1	Ggra6165.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 756097..758184 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6165.t1.stop1	Ggra6165.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 758182..758184 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6165.t1	Ggra6165.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 756097..758184 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:756097..758184+
coding sequence from alignment at tig00000045_pilon:756097..758184+

mRNA sequence

>Ggra6165.t1 ID=Ggra6165.t1|Name=Ggra6165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp
MEFRGFIGDRLALWHTPPARPHAGDAVGAPSHMMHPATAARAAPPPPPPP
PPPLLHARRVRRSGASSRVPLVVVAALLVALLLRANSGARGVSWEAAAAR
RARRCVARVFACRSSRPPPRESHEGPQQQCSVYWGRQTSLSAAERSRFSA
ALTDQRWQFARAYNVAAMQCACDVLFIQPCNGTHTPAALSALAARARSRR
SFFLAWPRALPMVVSRAAFVALAGFDERVDSEQAAVGYLAAHLQAVGFSQ
HFLQEGEPPLPHTGLQQEQEQLLLPFAPRWSAQNGSQYERGAANTLRVLE
QPSLIEHWVDDQVVQQAGEHALWRVLHDEYNVPWLLLAAMTAHQLDSLHQ
RLRTDSRSLMVVHVAHGLGNRLRALGGAKSFADGTSRTLVVVWERDMHCG
ASFDELFERDGLLVVDQLHVRWPFENERLSDAAWTQWALYNYMSAEHGVK
DEPLRHDDARHIYYRGAYVPKATDATLLRRVNGVLRALRPVRAVAERVDE
MAERLNSSIGVHVRHNDPQTELSRAPGSQLYGVADTQLMQYWRAASAPGA
FAAEIRRIWDDAPRSGGEVFVAADRAAWRDALADALGESVWWLRGGDACA
ADGDGDGDGDGDGDGDGGAERDAACVALAAAELWALARCERVLGSMWSSF
SEVAGRLRGGVRYAGADFARVSADNWPPRVRRVAERVWATRDAKR*

spliced messenger RNA

>Ggra6165.t1 ID=Ggra6165.t1|Name=Ggra6165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2088bp|location=Sequence derived from alignment at tig00000045_pilon:756097..758184+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggagtttcgcggATTCATTGGTGATAGACTTGCGCTTTGGCACACGCC
ACCGGCACGGCCGCATGCCGGCGACGCCGTCGGCGCGCCGtctcacatga
tgcaccccgccaccgccgcgcgtgccgcgccaccaccaccgccgccgccg
ccgccaccgctgctgcATGCGCGGCGCGTCCGGCGCTCGGGCGCGTCGTC
GCGCGtgccgctggtggtggtggcggcgttgctggtggcgctgctgctgc
GCGCCAACTCGGGCGCGCGAGGCGTGTCATGGGAAGCCGCGGCCGCGCGT
CGTGCGCGGCGCTGCGTGGCGCGCGTGTTCGCGTGCCGTTCATCGCGGCC
GCCGCCGCGCGAGTCGCACGAAGGCCCGCAGCAGCAGTGTTCCGTGTACT
GGGGGCGGCAGACGTCGCTGTCGGCGGCGGAGCGCAGCCGCTTCTCGGCG
GCGCTGACGGACCAGCGCTGGCAGTTTGCGCGCGCGTACAACGTGGCGGC
GATGCAATGCGCGTGCGACGTGCTGTTCATCCAGCCGTGCAACGGCACGC
ACACGCCCGCGGCGTTGAGCGCGCTGGCGGCGCGCGCCAGGAGCCGACGC
AGCTTCTTCCTGGCGTGGCCGCGCGCGCTGCCGATGGTGGTGTCGCGCGC
GGCGTTCGTGGCGCTGGCGGGCTTTGACGAGCGAGTGGATAGCGAGCAAG
CGGCCGTGGGGTACCTGGCGGCGCATCTACAGGCCGTGGGCTTCTCGCAG
CACTTTCTGCAAGAGGGCGAACCGCCGCTGCCGCACACGGGGCTGCAGCA
GGAGCAGGAGCAGCTACTGCTACCATTCGCGCCGCGCTGGAGCGCGCAAA
ACGGCTCGCAGTATGAGAGGGGAGCCGCCAACACGCTGCGCGTGCTTGAG
CAACCGAGCTTGATCGAGCACTGGGTGGACGACCAAGTGGTGCAACAGGC
GGGTGAACACGCGCTGTGGCGCGTGCTGCACGACGAGTACAACGTGCCGT
GGCTGCTGCTGGCGGCCATGACGGCGCATCAGCTGGACTCGCTGCACCAG
CGTCTGCGCACGGACAGCCGCTCGCTCATGGTGGTGCACGTGGCGCACGG
GCTCGGCAACCGTCTGCGCGCGCTCGGCGGCGCAAAGTCGTTCGCGGACG
GCACGTCGCGCACGCTGGTGGTGGTGTGGGAGCGCGACATGCACTGCGGC
GCGTCGTTCGACGAGCTGTTCGAACGCGACGGACTGCTGGTGGTGGATCA
GCTGCACGTGAGGTGGCCGTTCGAGAACGAGCGGCTGTCGGACGCGGCGT
GGACGCAGTGGGCGCTGTACAACTACATGAGCGCGGAGCACGGCGTGAAG
GACGAGCCGCTGCGCCACGACGACGCGCGACACATCTACTACCGCGGCGC
GTACGTGCCAAAGGCGACGGACGCCACGCTGCTgcggcgcgtgaacggcg
tgctgcgcgcgctgcgccccgtgcgcgcggtggccgagcgcgTGGACGAG
ATGGCGGAGCGGCTCAACAGCTCCATCGGCGTGCACGTGCGCCACAACGA
CCCGCAGACCGAGCTGTCGCGCGCGCCCGGCTCGCAGCTGTACGGCGTGG
CCGACACGCAGCTGATGCAGTACTGGCGCGCCGCCAGCGCGCCCGGCGCG
TTCGCCGCCGAGATCCGCCGCATCTGGGACGACGCGCCGCGCAGCGGCGG
CGAGGTGTTCGTGGCGGCCGACCGCGCCGCGTGGCGCGACGCGCTGGCCG
ACGCGCTCGGCGAGTCCGTGTGGTGGCTGCGCGGCGGCGACGCCTGCGCC
GCGgacggcgacggcgacggcgacggcgacggcgacggcgacggcgacgg
cgGggcggagcgcgacgcggcgtgcgtggcgctggcggcggcggAGCTGT
GGGCGCTTGCGCGCTGCGAGCGCGTGCTCGGCAGCATGTGGAGCAGCTTC
TCCGAGGTGGCCGGGCGCCTGCGCGGCGGCGTGCGCTACGCCGGCGCTGA
CTTTGCGCGCGTGAGCGCCGACAACTGGCCGCCGCGCGTGCGGCGGGTGG
CCGAGCGCGTGTGGGCGACGCGCGACGCAAAGCGCTGA

protein sequence of Ggra6165.t1

>Ggra6165.t1 ID=Ggra6165.t1|Name=Ggra6165.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=696bp
MEFRGFIGDRLALWHTPPARPHAGDAVGAPSHMMHPATAARAAPPPPPPP
PPPLLHARRVRRSGASSRVPLVVVAALLVALLLRANSGARGVSWEAAAAR
RARRCVARVFACRSSRPPPRESHEGPQQQCSVYWGRQTSLSAAERSRFSA
ALTDQRWQFARAYNVAAMQCACDVLFIQPCNGTHTPAALSALAARARSRR
SFFLAWPRALPMVVSRAAFVALAGFDERVDSEQAAVGYLAAHLQAVGFSQ
HFLQEGEPPLPHTGLQQEQEQLLLPFAPRWSAQNGSQYERGAANTLRVLE
QPSLIEHWVDDQVVQQAGEHALWRVLHDEYNVPWLLLAAMTAHQLDSLHQ
RLRTDSRSLMVVHVAHGLGNRLRALGGAKSFADGTSRTLVVVWERDMHCG
ASFDELFERDGLLVVDQLHVRWPFENERLSDAAWTQWALYNYMSAEHGVK
DEPLRHDDARHIYYRGAYVPKATDATLLRRVNGVLRALRPVRAVAERVDE
MAERLNSSIGVHVRHNDPQTELSRAPGSQLYGVADTQLMQYWRAASAPGA
FAAEIRRIWDDAPRSGGEVFVAADRAAWRDALADALGESVWWLRGGDACA
ADGDGDGDGDGDGDGDGGAERDAACVALAAAELWALARCERVLGSMWSSF
SEVAGRLRGGVRYAGADFARVSADNWPPRVRRVAERVWATRDAKR*

mRNA from alignment at tig00000045_pilon:756097..758184+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6165.t1 ID=Ggra6165.t1|Name=Ggra6165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2088bp|location=Sequence derived from alignment at tig00000045_pilon:756097..758184+ (Gracilaria gracilis GNS1m male)
atggagtttcgcggATTCATTGGTGATAGACTTGCGCTTTGGCACACGCC
ACCGGCACGGCCGCATGCCGGCGACGCCGTCGGCGCGCCGtctcacatga
tgcaccccgccaccgccgcgcgtgccgcgccaccaccaccgccgccgccg
ccgccaccgctgctgcATGCGCGGCGCGTCCGGCGCTCGGGCGCGTCGTC
GCGCGtgccgctggtggtggtggcggcgttgctggtggcgctgctgctgc
GCGCCAACTCGGGCGCGCGAGGCGTGTCATGGGAAGCCGCGGCCGCGCGT
CGTGCGCGGCGCTGCGTGGCGCGCGTGTTCGCGTGCCGTTCATCGCGGCC
GCCGCCGCGCGAGTCGCACGAAGGCCCGCAGCAGCAGTGTTCCGTGTACT
GGGGGCGGCAGACGTCGCTGTCGGCGGCGGAGCGCAGCCGCTTCTCGGCG
GCGCTGACGGACCAGCGCTGGCAGTTTGCGCGCGCGTACAACGTGGCGGC
GATGCAATGCGCGTGCGACGTGCTGTTCATCCAGCCGTGCAACGGCACGC
ACACGCCCGCGGCGTTGAGCGCGCTGGCGGCGCGCGCCAGGAGCCGACGC
AGCTTCTTCCTGGCGTGGCCGCGCGCGCTGCCGATGGTGGTGTCGCGCGC
GGCGTTCGTGGCGCTGGCGGGCTTTGACGAGCGAGTGGATAGCGAGCAAG
CGGCCGTGGGGTACCTGGCGGCGCATCTACAGGCCGTGGGCTTCTCGCAG
CACTTTCTGCAAGAGGGCGAACCGCCGCTGCCGCACACGGGGCTGCAGCA
GGAGCAGGAGCAGCTACTGCTACCATTCGCGCCGCGCTGGAGCGCGCAAA
ACGGCTCGCAGTATGAGAGGGGAGCCGCCAACACGCTGCGCGTGCTTGAG
CAACCGAGCTTGATCGAGCACTGGGTGGACGACCAAGTGGTGCAACAGGC
GGGTGAACACGCGCTGTGGCGCGTGCTGCACGACGAGTACAACGTGCCGT
GGCTGCTGCTGGCGGCCATGACGGCGCATCAGCTGGACTCGCTGCACCAG
CGTCTGCGCACGGACAGCCGCTCGCTCATGGTGGTGCACGTGGCGCACGG
GCTCGGCAACCGTCTGCGCGCGCTCGGCGGCGCAAAGTCGTTCGCGGACG
GCACGTCGCGCACGCTGGTGGTGGTGTGGGAGCGCGACATGCACTGCGGC
GCGTCGTTCGACGAGCTGTTCGAACGCGACGGACTGCTGGTGGTGGATCA
GCTGCACGTGAGGTGGCCGTTCGAGAACGAGCGGCTGTCGGACGCGGCGT
GGACGCAGTGGGCGCTGTACAACTACATGAGCGCGGAGCACGGCGTGAAG
GACGAGCCGCTGCGCCACGACGACGCGCGACACATCTACTACCGCGGCGC
GTACGTGCCAAAGGCGACGGACGCCACGCTGCTgcggcgcgtgaacggcg
tgctgcgcgcgctgcgccccgtgcgcgcggtggccgagcgcgTGGACGAG
ATGGCGGAGCGGCTCAACAGCTCCATCGGCGTGCACGTGCGCCACAACGA
CCCGCAGACCGAGCTGTCGCGCGCGCCCGGCTCGCAGCTGTACGGCGTGG
CCGACACGCAGCTGATGCAGTACTGGCGCGCCGCCAGCGCGCCCGGCGCG
TTCGCCGCCGAGATCCGCCGCATCTGGGACGACGCGCCGCGCAGCGGCGG
CGAGGTGTTCGTGGCGGCCGACCGCGCCGCGTGGCGCGACGCGCTGGCCG
ACGCGCTCGGCGAGTCCGTGTGGTGGCTGCGCGGCGGCGACGCCTGCGCC
GCGgacggcgacggcgacggcgacggcgacggcgacggcgacggcgacgg
cgGggcggagcgcgacgcggcgtgcgtggcgctggcggcggcggAGCTGT
GGGCGCTTGCGCGCTGCGAGCGCGTGCTCGGCAGCATGTGGAGCAGCTTC
TCCGAGGTGGCCGGGCGCCTGCGCGGCGGCGTGCGCTACGCCGGCGCTGA
CTTTGCGCGCGTGAGCGCCGACAACTGGCCGCCGCGCGTGCGGCGGGTGG
CCGAGCGCGTGTGGGCGACGCGCGACGCAAAGCGCTGA

Coding sequence (CDS) from alignment at tig00000045_pilon:756097..758184+

>Ggra6165.t1 ID=Ggra6165.t1|Name=Ggra6165.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2088bp|location=Sequence derived from alignment at tig00000045_pilon:756097..758184+ (Gracilaria gracilis GNS1m male)
atggagtttcgcggATTCATTGGTGATAGACTTGCGCTTTGGCACACGCC
ACCGGCACGGCCGCATGCCGGCGACGCCGTCGGCGCGCCGtctcacatga
tgcaccccgccaccgccgcgcgtgccgcgccaccaccaccgccgccgccg
ccgccaccgctgctgcATGCGCGGCGCGTCCGGCGCTCGGGCGCGTCGTC
GCGCGtgccgctggtggtggtggcggcgttgctggtggcgctgctgctgc
GCGCCAACTCGGGCGCGCGAGGCGTGTCATGGGAAGCCGCGGCCGCGCGT
CGTGCGCGGCGCTGCGTGGCGCGCGTGTTCGCGTGCCGTTCATCGCGGCC
GCCGCCGCGCGAGTCGCACGAAGGCCCGCAGCAGCAGTGTTCCGTGTACT
GGGGGCGGCAGACGTCGCTGTCGGCGGCGGAGCGCAGCCGCTTCTCGGCG
GCGCTGACGGACCAGCGCTGGCAGTTTGCGCGCGCGTACAACGTGGCGGC
GATGCAATGCGCGTGCGACGTGCTGTTCATCCAGCCGTGCAACGGCACGC
ACACGCCCGCGGCGTTGAGCGCGCTGGCGGCGCGCGCCAGGAGCCGACGC
AGCTTCTTCCTGGCGTGGCCGCGCGCGCTGCCGATGGTGGTGTCGCGCGC
GGCGTTCGTGGCGCTGGCGGGCTTTGACGAGCGAGTGGATAGCGAGCAAG
CGGCCGTGGGGTACCTGGCGGCGCATCTACAGGCCGTGGGCTTCTCGCAG
CACTTTCTGCAAGAGGGCGAACCGCCGCTGCCGCACACGGGGCTGCAGCA
GGAGCAGGAGCAGCTACTGCTACCATTCGCGCCGCGCTGGAGCGCGCAAA
ACGGCTCGCAGTATGAGAGGGGAGCCGCCAACACGCTGCGCGTGCTTGAG
CAACCGAGCTTGATCGAGCACTGGGTGGACGACCAAGTGGTGCAACAGGC
GGGTGAACACGCGCTGTGGCGCGTGCTGCACGACGAGTACAACGTGCCGT
GGCTGCTGCTGGCGGCCATGACGGCGCATCAGCTGGACTCGCTGCACCAG
CGTCTGCGCACGGACAGCCGCTCGCTCATGGTGGTGCACGTGGCGCACGG
GCTCGGCAACCGTCTGCGCGCGCTCGGCGGCGCAAAGTCGTTCGCGGACG
GCACGTCGCGCACGCTGGTGGTGGTGTGGGAGCGCGACATGCACTGCGGC
GCGTCGTTCGACGAGCTGTTCGAACGCGACGGACTGCTGGTGGTGGATCA
GCTGCACGTGAGGTGGCCGTTCGAGAACGAGCGGCTGTCGGACGCGGCGT
GGACGCAGTGGGCGCTGTACAACTACATGAGCGCGGAGCACGGCGTGAAG
GACGAGCCGCTGCGCCACGACGACGCGCGACACATCTACTACCGCGGCGC
GTACGTGCCAAAGGCGACGGACGCCACGCTGCTgcggcgcgtgaacggcg
tgctgcgcgcgctgcgccccgtgcgcgcggtggccgagcgcgTGGACGAG
ATGGCGGAGCGGCTCAACAGCTCCATCGGCGTGCACGTGCGCCACAACGA
CCCGCAGACCGAGCTGTCGCGCGCGCCCGGCTCGCAGCTGTACGGCGTGG
CCGACACGCAGCTGATGCAGTACTGGCGCGCCGCCAGCGCGCCCGGCGCG
TTCGCCGCCGAGATCCGCCGCATCTGGGACGACGCGCCGCGCAGCGGCGG
CGAGGTGTTCGTGGCGGCCGACCGCGCCGCGTGGCGCGACGCGCTGGCCG
ACGCGCTCGGCGAGTCCGTGTGGTGGCTGCGCGGCGGCGACGCCTGCGCC
GCGgacggcgacggcgacggcgacggcgacggcgacggcgacggcgacgg
cgGggcggagcgcgacgcggcgtgcgtggcgctggcggcggcggAGCTGT
GGGCGCTTGCGCGCTGCGAGCGCGTGCTCGGCAGCATGTGGAGCAGCTTC
TCCGAGGTGGCCGGGCGCCTGCGCGGCGGCGTGCGCTACGCCGGCGCTGA
CTTTGCGCGCGTGAGCGCCGACAACTGGCCGCCGCGCGTGCGGCGGGTGG
CCGAGCGCGTGTGGGCGACGCGCGACGCAAAGCGCTGA