Ggra6159.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6159.t1
Unique NameGgra6159.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:710153..710713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6159Ggra6159Gracilaria gracilis GNS1m malegenetig00000045_pilon 710153..710713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6159.t1Ggra6159.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 710153..710713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6159.t1.stop1Ggra6159.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 710153..710155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6159.t1.CDS1Ggra6159.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 710153..710404 -
Ggra6159.t1.CDS2Ggra6159.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 710480..710713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6159.t1.exon1Ggra6159.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 710153..710404 -
Ggra6159.t1.exon2Ggra6159.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 710480..710713 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6159.t1.intron1Ggra6159.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 710405..710479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6159.t1.start1Ggra6159.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 710711..710713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6159.t1 ID=Ggra6159.t1|Name=Ggra6159.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MRKSFALKLCTTIEHKNKEEFMNAWSSSLLVALKETIFTAKSAVNNIGEH
EIGDSVPSVPSEIGRSEPLQAIDFVSVKVRSALSKLAERKVRGMNRSHVG
LWAEEVMAFNYQLEGLTSALGLTESNEVFAENGWSLLASLSIQTVLSQEQ
NTLFEALQHRR*
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spliced messenger RNA

>Ggra6159.t1 ID=Ggra6159.t1|Name=Ggra6159.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000045_pilon:710153..710713- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAAGAGCTTCGCTTTGAAATTATGTACCACTATTGAACATAAGAA
CAAAGAAGAATTTATGAATGCATGGAGTTCTTCGCTTCTGGTGGCTTTGA
AAGAAACAATTTTTACGGCGAAGTCTGCAGTGAACAACATCGGCGAGCAT
GAAATTGGAGACAGTGTGCCAAGCGTTCCGTCGGAGATTGGGCGCTCAGA
ACCGTTACAAGCTATCGATTTTGTGTCGGTTAAGGTGAGAAGCGCATTAT
CAAAGCTTGCCGAGAGAAAAGTTAGAGGTATGAATCGATCTCATGTTGGG
CTTTGGGCTGAGGAAGTTATGGCGTTCAACTATCAATTGGAAGGTTTAAC
GTCGGCGTTGGGTCTTACAGAGAGCAATGAGGTATTTGCGGAAAATGGGT
GGAGTTTGTTAGCCTCTTTGAGCATACAGACAGTTCTTAGTCAAGAGCAA
AACACATTATTTGAGGCTTTGCAGCACAGACGTTGA
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protein sequence of Ggra6159.t1

>Ggra6159.t1 ID=Ggra6159.t1|Name=Ggra6159.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MRKSFALKLCTTIEHKNKEEFMNAWSSSLLVALKETIFTAKSAVNNIGEH
EIGDSVPSVPSEIGRSEPLQAIDFVSVKVRSALSKLAERKVRGMNRSHVG
LWAEEVMAFNYQLEGLTSALGLTESNEVFAENGWSLLASLSIQTVLSQEQ
NTLFEALQHRR*
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mRNA from alignment at tig00000045_pilon:710153..710713-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6159.t1 ID=Ggra6159.t1|Name=Ggra6159.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000045_pilon:710153..710713- (Gracilaria gracilis GNS1m male)
ATGAGGAAGAGCTTCGCTTTGAAATTATGTACCACTATTGAACATAAGAA
CAAAGAAGAATTTATGAATGCATGGAGTTCTTCGCTTCTGGTGGCTTTGA
AAGAAACAATTTTTACGGCGAAGTCTGCAGTGAACAACATCGGCGAGCAT
GAAATTGGAGACAGTGTGCCAAGCGTTCCGTCGGAGATTGGGCGCTCAGA
ACCGTTACAAGCTATCGATTTTGTGTCGGTTAAGGTATGTAATGCTTTCT
ACTGTGGTTTGCTTTTGGTCTATATTTTTCGTCTAAAAATAATTTTTTAC
GACGTACAGGTGAGAAGCGCATTATCAAAGCTTGCCGAGAGAAAAGTTAG
AGGTATGAATCGATCTCATGTTGGGCTTTGGGCTGAGGAAGTTATGGCGT
TCAACTATCAATTGGAAGGTTTAACGTCGGCGTTGGGTCTTACAGAGAGC
AATGAGGTATTTGCGGAAAATGGGTGGAGTTTGTTAGCCTCTTTGAGCAT
ACAGACAGTTCTTAGTCAAGAGCAAAACACATTATTTGAGGCTTTGCAGC
ACAGACGTTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:710153..710713-

>Ggra6159.t1 ID=Ggra6159.t1|Name=Ggra6159.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000045_pilon:710153..710713- (Gracilaria gracilis GNS1m male)
ATGAGGAAGAGCTTCGCTTTGAAATTATGTACCACTATTGAACATAAGAA
CAAAGAAGAATTTATGAATGCATGGAGTTCTTCGCTTCTGGTGGCTTTGA
AAGAAACAATTTTTACGGCGAAGTCTGCAGTGAACAACATCGGCGAGCAT
GAAATTGGAGACAGTGTGCCAAGCGTTCCGTCGGAGATTGGGCGCTCAGA
ACCGTTACAAGCTATCGATTTTGTGTCGGTTAAGGTGAGAAGCGCATTAT
CAAAGCTTGCCGAGAGAAAAGTTAGAGGTATGAATCGATCTCATGTTGGG
CTTTGGGCTGAGGAAGTTATGGCGTTCAACTATCAATTGGAAGGTTTAAC
GTCGGCGTTGGGTCTTACAGAGAGCAATGAGGTATTTGCGGAAAATGGGT
GGAGTTTGTTAGCCTCTTTGAGCATACAGACAGTTCTTAGTCAAGAGCAA
AACACATTATTTGAGGCTTTGCAGCACAGACGTTGA
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