Ggra6157.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6157.t1
Unique NameGgra6157.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:680417..681277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.2276
PFAMsAAA
Max annot lvl4776|Peronosporales
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
Evalue4.56e-61
EggNOG OGsCOG0339@1|root,COG0363@1|root,COG0464@1|root,KOG0741@2759|Eukaryota,KOG2089@2759|Eukaryota,KOG3147@2759|Eukaryota,3Q96E@4776|Peronosporales
EC3.6.4.6
DescriptionAAA domain (Cdc48 subfamily)
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6157Ggra6157Gracilaria gracilis GNS1m malegenetig00000045_pilon 680417..681277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6157.t1Ggra6157.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 680417..681277 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6157.t1.start1Ggra6157.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 680417..680419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6157.t1.CDS1Ggra6157.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 680417..680842 +
Ggra6157.t1.CDS2Ggra6157.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 680935..681093 +
Ggra6157.t1.CDS3Ggra6157.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000045_pilon 681179..681277 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6157.t1.exon1Ggra6157.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 680417..680842 +
Ggra6157.t1.exon2Ggra6157.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 680935..681093 +
Ggra6157.t1.exon3Ggra6157.t1.exon3Gracilaria gracilis GNS1m maleexontig00000045_pilon 681179..681277 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6157.t1.intron1Ggra6157.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 680843..680934 +
Ggra6157.t1.intron2Ggra6157.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000045_pilon 681094..681178 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6157.t1.stop1Ggra6157.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 681275..681277 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6157.t1 ID=Ggra6157.t1|Name=Ggra6157.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MSVSVNIGSVPAKLAEAVQKAAEEAVSQRGSFSVAISGGSLPKLLAEGLK
SHSVDTDKWDVFLADERVVPLDHKDSNYREIRDRLPSMPIIPIDPSLPSD
ECAIDYTKKVVEKLGQSPKFDMLLLGLGPDGHTCSLFPGHPLLQENEKLV
APITDSPKPPPTRVTLTYPVLNAARATVFVVTGSSKADVVQDIIENEKST
LPGALLRPTDGTVTWLFDEGASSKLKK*
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spliced messenger RNA

>Ggra6157.t1 ID=Ggra6157.t1|Name=Ggra6157.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000045_pilon:680417..681277+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCAGTGTGAACATCGGTTCTGTACCAGCCAAGCTCGCCGAAGC
CGTTCAAAAGGCTGCGGAAGAGGCTGTTAGTCAGCGCGGATCTTTCTCGG
TTGCAATCTCAGGCGGCTCGCTCCCGAAACTGTTGGCAGAGGGCTTGAAA
TCTCATTCTGTTGACACAGACAAATGGGACGTATTCCTTGCTGATGAGCG
GGTTGTACCTTTGGATCATAAGGATTCGAACTACCGCGAAATCCGCGATC
GCCTTCCATCGATGCCCATTATTCCTATTGATCCCTCTCTTCCTTCTGAT
GAATGTGCGATTGATTACACGAAGAAGGTCGTGGAGAAACTTGGCCAGTC
TCCGAAGTTTGACATGTTGCTTTTAGGTCTAGGACCAGATGGCCACACCT
GCTCGTTGTTTCCAGGACACCCTTTGCTGCAAGAGAATGAAAAACTTGTC
GCACCTATAACAGATTCTCCTAAGCCACCTCCAACCAGGGTTACCCTGAC
ATACCCTGTGTTGAACGCGGCTCGAGCAACAGTATTTGTCGTAACAGGAT
CAAGCAAAGCCGACGTCGTGCAAGACATAATTGAGAATGAGAAAAGCACA
CTACCAGGAGCGCTTCTCAGGCCAACGGATGGCACCGTGACCTGGCTGTT
TGATGAAGGCGCCTCATCTAAATTAAAGAAGTGA
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protein sequence of Ggra6157.t1

>Ggra6157.t1 ID=Ggra6157.t1|Name=Ggra6157.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MSVSVNIGSVPAKLAEAVQKAAEEAVSQRGSFSVAISGGSLPKLLAEGLK
SHSVDTDKWDVFLADERVVPLDHKDSNYREIRDRLPSMPIIPIDPSLPSD
ECAIDYTKKVVEKLGQSPKFDMLLLGLGPDGHTCSLFPGHPLLQENEKLV
APITDSPKPPPTRVTLTYPVLNAARATVFVVTGSSKADVVQDIIENEKST
LPGALLRPTDGTVTWLFDEGASSKLKK*
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mRNA from alignment at tig00000045_pilon:680417..681277+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6157.t1 ID=Ggra6157.t1|Name=Ggra6157.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000045_pilon:680417..681277+ (Gracilaria gracilis GNS1m male)
ATGAGCGTCAGTGTGAACATCGGTTCTGTACCAGCCAAGCTCGCCGAAGC
CGTTCAAAAGGCTGCGGAAGAGGCTGTTAGTCAGCGCGGATCTTTCTCGG
TTGCAATCTCAGGCGGCTCGCTCCCGAAACTGTTGGCAGAGGGCTTGAAA
TCTCATTCTGTTGACACAGACAAATGGGACGTATTCCTTGCTGATGAGCG
GGTTGTACCTTTGGATCATAAGGATTCGAACTACCGCGAAATCCGCGATC
GCCTTCCATCGATGCCCATTATTCCTATTGATCCCTCTCTTCCTTCTGAT
GAATGTGCGATTGATTACACGAAGAAGGTCGTGGAGAAACTTGGCCAGTC
TCCGAAGTTTGACATGTTGCTTTTAGGTCTAGGACCAGATGGCCACACCT
GCTCGTTGTTTCCAGGACACCCTTTGGTACGTTTCTCCCTCAGTCTTTAC
TACGTTTGAGCAGCCTCATTTTGTAGATTCATTGCAAACTAATTGTGTAC
TTTTTCTGTGATCTATAGCTGCAAGAGAATGAAAAACTTGTCGCACCTAT
AACAGATTCTCCTAAGCCACCTCCAACCAGGGTTACCCTGACATACCCTG
TGTTGAACGCGGCTCGAGCAACAGTATTTGTCGTAACAGGATCAAGCAAA
GCCGACGTCGTGCAAGACATAATTGAGGTAAGTTGATGTGGACAAACGAT
CGAGATTGACTCAAGCAGGGAACAACCCAGACTGCTAACTTGTTCATCCA
ACCCTACTGTAGAATGAGAAAAGCACACTACCAGGAGCGCTTCTCAGGCC
AACGGATGGCACCGTGACCTGGCTGTTTGATGAAGGCGCCTCATCTAAAT
TAAAGAAGTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:680417..681277+

>Ggra6157.t1 ID=Ggra6157.t1|Name=Ggra6157.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000045_pilon:680417..681277+ (Gracilaria gracilis GNS1m male)
ATGAGCGTCAGTGTGAACATCGGTTCTGTACCAGCCAAGCTCGCCGAAGC
CGTTCAAAAGGCTGCGGAAGAGGCTGTTAGTCAGCGCGGATCTTTCTCGG
TTGCAATCTCAGGCGGCTCGCTCCCGAAACTGTTGGCAGAGGGCTTGAAA
TCTCATTCTGTTGACACAGACAAATGGGACGTATTCCTTGCTGATGAGCG
GGTTGTACCTTTGGATCATAAGGATTCGAACTACCGCGAAATCCGCGATC
GCCTTCCATCGATGCCCATTATTCCTATTGATCCCTCTCTTCCTTCTGAT
GAATGTGCGATTGATTACACGAAGAAGGTCGTGGAGAAACTTGGCCAGTC
TCCGAAGTTTGACATGTTGCTTTTAGGTCTAGGACCAGATGGCCACACCT
GCTCGTTGTTTCCAGGACACCCTTTGCTGCAAGAGAATGAAAAACTTGTC
GCACCTATAACAGATTCTCCTAAGCCACCTCCAACCAGGGTTACCCTGAC
ATACCCTGTGTTGAACGCGGCTCGAGCAACAGTATTTGTCGTAACAGGAT
CAAGCAAAGCCGACGTCGTGCAAGACATAATTGAGAATGAGAAAAGCACA
CTACCAGGAGCGCTTCTCAGGCCAACGGATGGCACCGTGACCTGGCTGTT
TGATGAAGGCGCCTCATCTAAATTAAAGAAGTGA
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