Ggra6127.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6127.t1
Unique NameGgra6127.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:614634..615863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog479434.Sthe_2312
PFAMsFAD_binding_3
Max annot lvl189775|Thermomicrobia
KEGG rclassRC00046
KEGG koko:K19189
KEGG ReactionR04130
KEGG Pathwayko00760,ko01120,map00760,map01120
Evalue2.03e-92
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,2GBDX@200795|Chloroflexi,27Z1B@189775|Thermomicrobia
EC1.14.13.10
DescriptionFAD binding domain
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6127Ggra6127Gracilaria gracilis GNS1m malegenetig00000045_pilon 614634..615863 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6127.t1.stop1Ggra6127.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 614634..614636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6127.t1.CDS1Ggra6127.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 614634..615863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6127.t1.exon1Ggra6127.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 614634..615863 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6127.t1.start1Ggra6127.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 615861..615863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6127.t1Ggra6127.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 614634..615863 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6127.t1 ID=Ggra6127.t1|Name=Ggra6127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp
MPESQAAIIVGGSLGGLTAAICLRDIGFSVSIFERSEQYLSGKGAGIALN
PHMMSFIRDHPRFGLSEHSMTVKRFWYWDLNHEKNREHKVMLKLSSYNSV
YKALLEIFGTQDYHLARKVTDISQCTEKVNVTTSDGTQHSCDLLVCADGS
GSDSKHMFTSDKEPAYAGYYAWRGIVKDVHLPPYLVKRFEEAVVYHLRPD
GHILAYPIPFFEPDENGKLVRSTYMNWLWYRNLPDKKHLRNLLVDSTGKQ
RLRSVPRGQVPSARMDKLKTEASVLQQDFRQLVNSTQDPFIQPIFDYGTE
RMVLGRICLLGDAAFSVRPHVAVGTAKAWDDAVNLAYFLKQSGHDLRPAL
HAWETKQLALGKQLLKRSVELGNMLQNGTWDNDRPSPFGLYEGADSYNWN
GTLDHLTST*
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spliced messenger RNA

>Ggra6127.t1 ID=Ggra6127.t1|Name=Ggra6127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000045_pilon:614634..615863- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGAGTCACAAGCAGCGATTATTGTGGGCGGCAGTTTGGGAGGCTT
GACTGCAGCCATATGCCTTCGTGACATTGGGTTTTCAGTATCTATTTTCG
AGCGGTCTGAACAATACTTGTCTGGTAAAGGAGCAGGAATAGCTCTAAAC
CCCCACATGATGTCTTTCATTCGAGATCATCCTCGTTTTGGATTATCAGA
ACATAGCATGACGGTTAAAAGGTTTTGGTATTGGGATCTCAACCATGAGA
AGAATCGAGAACACAAAGTGATGCTGAAGTTATCTTCCTACAATTCGGTA
TACAAGGCCTTGTTAGAGATTTTCGGGACCCAGGATTATCACCTCGCACG
GAAAGTGACTGATATCTCACAATGCACTGAAAAGGTTAACGTAACAACCT
CAGATGGAACCCAGCACTCTTGTGATCTTCTCGTATGTGCTGACGGGAGT
GGATCAGATTCGAAACACATGTTCACTTCCGACAAAGAGCCAGCATATGC
TGGGTATTATGCTTGGAGAGGAATTGTGAAGGATGTCCATTTGCCGCCAT
ATTTGGTGAAACGCTTTGAAGAAGCCGTAGTATACCATCTGAGACCAGAT
GGACACATCTTGGCTTATCCCATTCCCTTCTTTGAGCCAGATGAAAACGG
GAAGTTGGTTAGGTCAACTTATATGAACTGGCTGTGGTATAGAAATCTAC
CGGACAAGAAGCATCTACGTAACCTTCTCGTCGACTCTACAGGAAAACAA
AGATTGAGGTCTGTACCGAGGGGGCAGGTGCCGTCGGCCCGTATGGATAA
ACTAAAGACTGAAGCGAGTGTTTTGCAACAAGATTTTCGACAATTAGTGA
ACTCTACCCAGGACCCATTCATCCAACCAATATTCGATTATGGAACCGAA
AGGATGGTTCTTGGAAGAATATGTTTGCTTGGAGACGCTGCCTTTTCTGT
CCGCCCTCACGTAGCAGTTGGAACTGCAAAAGCATGGGACGATGCAGTGA
ACTTGGCGTACTTTTTGAAACAATCAGGCCATGATCTTCGTCCCGCACTA
CACGCCTGGGAAACAAAACAGCTTGCTTTAGGGAAACAGCTACTGAAGAG
AAGCGTAGAACTTGGGAATATGCTTCAAAATGGGACATGGGACAATGATC
GCCCATCTCCATTCGGTTTGTATGAGGGGGCTGACTCTTATAATTGGAAT
GGTACCCTCGACCATCTCACTTCCACATGA
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protein sequence of Ggra6127.t1

>Ggra6127.t1 ID=Ggra6127.t1|Name=Ggra6127.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MPESQAAIIVGGSLGGLTAAICLRDIGFSVSIFERSEQYLSGKGAGIALN
PHMMSFIRDHPRFGLSEHSMTVKRFWYWDLNHEKNREHKVMLKLSSYNSV
YKALLEIFGTQDYHLARKVTDISQCTEKVNVTTSDGTQHSCDLLVCADGS
GSDSKHMFTSDKEPAYAGYYAWRGIVKDVHLPPYLVKRFEEAVVYHLRPD
GHILAYPIPFFEPDENGKLVRSTYMNWLWYRNLPDKKHLRNLLVDSTGKQ
RLRSVPRGQVPSARMDKLKTEASVLQQDFRQLVNSTQDPFIQPIFDYGTE
RMVLGRICLLGDAAFSVRPHVAVGTAKAWDDAVNLAYFLKQSGHDLRPAL
HAWETKQLALGKQLLKRSVELGNMLQNGTWDNDRPSPFGLYEGADSYNWN
GTLDHLTST*
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mRNA from alignment at tig00000045_pilon:614634..615863-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6127.t1 ID=Ggra6127.t1|Name=Ggra6127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000045_pilon:614634..615863- (Gracilaria gracilis GNS1m male)
ATGCCTGAGTCACAAGCAGCGATTATTGTGGGCGGCAGTTTGGGAGGCTT
GACTGCAGCCATATGCCTTCGTGACATTGGGTTTTCAGTATCTATTTTCG
AGCGGTCTGAACAATACTTGTCTGGTAAAGGAGCAGGAATAGCTCTAAAC
CCCCACATGATGTCTTTCATTCGAGATCATCCTCGTTTTGGATTATCAGA
ACATAGCATGACGGTTAAAAGGTTTTGGTATTGGGATCTCAACCATGAGA
AGAATCGAGAACACAAAGTGATGCTGAAGTTATCTTCCTACAATTCGGTA
TACAAGGCCTTGTTAGAGATTTTCGGGACCCAGGATTATCACCTCGCACG
GAAAGTGACTGATATCTCACAATGCACTGAAAAGGTTAACGTAACAACCT
CAGATGGAACCCAGCACTCTTGTGATCTTCTCGTATGTGCTGACGGGAGT
GGATCAGATTCGAAACACATGTTCACTTCCGACAAAGAGCCAGCATATGC
TGGGTATTATGCTTGGAGAGGAATTGTGAAGGATGTCCATTTGCCGCCAT
ATTTGGTGAAACGCTTTGAAGAAGCCGTAGTATACCATCTGAGACCAGAT
GGACACATCTTGGCTTATCCCATTCCCTTCTTTGAGCCAGATGAAAACGG
GAAGTTGGTTAGGTCAACTTATATGAACTGGCTGTGGTATAGAAATCTAC
CGGACAAGAAGCATCTACGTAACCTTCTCGTCGACTCTACAGGAAAACAA
AGATTGAGGTCTGTACCGAGGGGGCAGGTGCCGTCGGCCCGTATGGATAA
ACTAAAGACTGAAGCGAGTGTTTTGCAACAAGATTTTCGACAATTAGTGA
ACTCTACCCAGGACCCATTCATCCAACCAATATTCGATTATGGAACCGAA
AGGATGGTTCTTGGAAGAATATGTTTGCTTGGAGACGCTGCCTTTTCTGT
CCGCCCTCACGTAGCAGTTGGAACTGCAAAAGCATGGGACGATGCAGTGA
ACTTGGCGTACTTTTTGAAACAATCAGGCCATGATCTTCGTCCCGCACTA
CACGCCTGGGAAACAAAACAGCTTGCTTTAGGGAAACAGCTACTGAAGAG
AAGCGTAGAACTTGGGAATATGCTTCAAAATGGGACATGGGACAATGATC
GCCCATCTCCATTCGGTTTGTATGAGGGGGCTGACTCTTATAATTGGAAT
GGTACCCTCGACCATCTCACTTCCACATGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:614634..615863-

>Ggra6127.t1 ID=Ggra6127.t1|Name=Ggra6127.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000045_pilon:614634..615863- (Gracilaria gracilis GNS1m male)
ATGCCTGAGTCACAAGCAGCGATTATTGTGGGCGGCAGTTTGGGAGGCTT
GACTGCAGCCATATGCCTTCGTGACATTGGGTTTTCAGTATCTATTTTCG
AGCGGTCTGAACAATACTTGTCTGGTAAAGGAGCAGGAATAGCTCTAAAC
CCCCACATGATGTCTTTCATTCGAGATCATCCTCGTTTTGGATTATCAGA
ACATAGCATGACGGTTAAAAGGTTTTGGTATTGGGATCTCAACCATGAGA
AGAATCGAGAACACAAAGTGATGCTGAAGTTATCTTCCTACAATTCGGTA
TACAAGGCCTTGTTAGAGATTTTCGGGACCCAGGATTATCACCTCGCACG
GAAAGTGACTGATATCTCACAATGCACTGAAAAGGTTAACGTAACAACCT
CAGATGGAACCCAGCACTCTTGTGATCTTCTCGTATGTGCTGACGGGAGT
GGATCAGATTCGAAACACATGTTCACTTCCGACAAAGAGCCAGCATATGC
TGGGTATTATGCTTGGAGAGGAATTGTGAAGGATGTCCATTTGCCGCCAT
ATTTGGTGAAACGCTTTGAAGAAGCCGTAGTATACCATCTGAGACCAGAT
GGACACATCTTGGCTTATCCCATTCCCTTCTTTGAGCCAGATGAAAACGG
GAAGTTGGTTAGGTCAACTTATATGAACTGGCTGTGGTATAGAAATCTAC
CGGACAAGAAGCATCTACGTAACCTTCTCGTCGACTCTACAGGAAAACAA
AGATTGAGGTCTGTACCGAGGGGGCAGGTGCCGTCGGCCCGTATGGATAA
ACTAAAGACTGAAGCGAGTGTTTTGCAACAAGATTTTCGACAATTAGTGA
ACTCTACCCAGGACCCATTCATCCAACCAATATTCGATTATGGAACCGAA
AGGATGGTTCTTGGAAGAATATGTTTGCTTGGAGACGCTGCCTTTTCTGT
CCGCCCTCACGTAGCAGTTGGAACTGCAAAAGCATGGGACGATGCAGTGA
ACTTGGCGTACTTTTTGAAACAATCAGGCCATGATCTTCGTCCCGCACTA
CACGCCTGGGAAACAAAACAGCTTGCTTTAGGGAAACAGCTACTGAAGAG
AAGCGTAGAACTTGGGAATATGCTTCAAAATGGGACATGGGACAATGATC
GCCCATCTCCATTCGGTTTGTATGAGGGGGCTGACTCTTATAATTGGAAT
GGTACCCTCGACCATCTCACTTCCACATGA
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