Ggra6124.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6124.t2
Unique Name	Ggra6124.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:609712..610335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706139.1
Preferred name	MIPS
PFAMs	Inos-1-P_synth,NAD_binding_5
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC01804
KEGG ko	ko:K01858
KEGG Reaction	R07324
KEGG Pathway	ko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130
GOs	GO:0000003,GO:0000302,GO:0002252,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0004512,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005975,GO:0006020,GO:0006021,GO:0006066,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006979,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009266,GO:0009267,GO:0009314,GO:0009408,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009620,GO:0009628,GO:0009636,GO:0009642,GO:0009644,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010154,GO:0010264,GO:0016036,GO:0016051,GO:0016853,GO:0016872,GO:0017144,GO:0019637,GO:0019751,GO:0022414,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032958,GO:0033517,GO:0033554,GO:0034637,GO:0042221,GO:0042398,GO:0042493,GO:0042542,GO:0042594,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043647,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045017,GO:0046165,GO:0046173,GO:0046474,GO:0046486,GO:0046677,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0061458,GO:0071496,GO:0071704,GO:0090407,GO:0098542,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901700
Evalue	1.69e-86
EggNOG OGs	COG1260@1\|root,KOG0693@2759\|Eukaryota
EC	5.5.1.4
Description	inositol-3-phosphate synthase activity
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6124	Ggra6124	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 608719..610335 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6124.t2.start1	Ggra6124.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 609712..609714 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6124.t2.CDS1	Ggra6124.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 609712..610335 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6124.t2.exon1	Ggra6124.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 609712..610335 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6124.t2.stop1	Ggra6124.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 610333..610335 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6124.t2	Ggra6124.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 609712..610335 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:609712..610335+
coding sequence from alignment at tig00000045_pilon:609712..610335+

mRNA sequence

>Ggra6124.t2 ID=Ggra6124.t2|Name=Ggra6124.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=208bp
MKSVLADYLIGCGVKIKTMVTYNHLGNNDMYQLTDEVMWKPKSASKSRVI
EDIVDSNGVLYKGGNDVPDHVVVVKYVPFLGDSKRDVSEYTSETFMDCHY
TTIMHNECLDSALCAPLILDLAIFAELFARVEYCVEGTNGSTKEMVYSGM
ESALSVLGFYMKIPRTPAGEPIVNALGRQKACIENMLRALVGLQPEHNML
LETKCPA*

spliced messenger RNA

>Ggra6124.t2 ID=Ggra6124.t2|Name=Ggra6124.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00000045_pilon:609712..610335+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCGGTTCTGGCAGACTACTTGATTGGATGCGGCGTTAAGATTAA
GACCATGGTGACTTACAACCACCTTGGAAACAATGATATGTACCAGTTGA
CGGATGAGGTTATGTGGAAACCGAAGTCAGCTTCAAAATCACGAGTGATT
GAAGATATTGTTGATTCCAATGGAGTATTGTACAAGGGTGGGAATGACGT
ACCGGATCACGTTGTGGTTGTGAAGTATGTGCCGTTTCTTGGTGATTCGA
AACGCGATGTCTCTGAATACACGTCTGAGACATTCATGGATTGTCACTAC
ACTACAATCATGCACAACGAGTGCTTAGACTCAGCATTGTGTGCACCGCT
AATTCTAGATCTGGCAATCTTCGCAGAGTTGTTCGCTCGGGTGGAGTACT
GTGTGGAAGGCACAAATGGATCGACGAAGGAGATGGTGTATTCAGGTATG
GAAAGTGCACTAAGCGTGTTGGGCTTCTATATGAAGATACCGCGCACACC
AGCTGGAGAACCTATTGTGAATGCGTTGGGGCGACAGAAGGCGTGTATTG
AAAACATGCTCAGGGCGTTAGTAGGACTACAACCAGAACACAACATGTTA
CTCGAAACAAAATGCCCAGCTTGA

protein sequence of Ggra6124.t2

>Ggra6124.t2 ID=Ggra6124.t2|Name=Ggra6124.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=208bp
MKSVLADYLIGCGVKIKTMVTYNHLGNNDMYQLTDEVMWKPKSASKSRVI
EDIVDSNGVLYKGGNDVPDHVVVVKYVPFLGDSKRDVSEYTSETFMDCHY
TTIMHNECLDSALCAPLILDLAIFAELFARVEYCVEGTNGSTKEMVYSGM
ESALSVLGFYMKIPRTPAGEPIVNALGRQKACIENMLRALVGLQPEHNML
LETKCPA*

mRNA from alignment at tig00000045_pilon:609712..610335+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6124.t2 ID=Ggra6124.t2|Name=Ggra6124.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00000045_pilon:609712..610335+ (Gracilaria gracilis GNS1m male)
ATGAAGTCGGTTCTGGCAGACTACTTGATTGGATGCGGCGTTAAGATTAA
GACCATGGTGACTTACAACCACCTTGGAAACAATGATATGTACCAGTTGA
CGGATGAGGTTATGTGGAAACCGAAGTCAGCTTCAAAATCACGAGTGATT
GAAGATATTGTTGATTCCAATGGAGTATTGTACAAGGGTGGGAATGACGT
ACCGGATCACGTTGTGGTTGTGAAGTATGTGCCGTTTCTTGGTGATTCGA
AACGCGATGTCTCTGAATACACGTCTGAGACATTCATGGATTGTCACTAC
ACTACAATCATGCACAACGAGTGCTTAGACTCAGCATTGTGTGCACCGCT
AATTCTAGATCTGGCAATCTTCGCAGAGTTGTTCGCTCGGGTGGAGTACT
GTGTGGAAGGCACAAATGGATCGACGAAGGAGATGGTGTATTCAGGTATG
GAAAGTGCACTAAGCGTGTTGGGCTTCTATATGAAGATACCGCGCACACC
AGCTGGAGAACCTATTGTGAATGCGTTGGGGCGACAGAAGGCGTGTATTG
AAAACATGCTCAGGGCGTTAGTAGGACTACAACCAGAACACAACATGTTA
CTCGAAACAAAATGCCCAGCTTGA

Coding sequence (CDS) from alignment at tig00000045_pilon:609712..610335+

>Ggra6124.t2 ID=Ggra6124.t2|Name=Ggra6124.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=624bp|location=Sequence derived from alignment at tig00000045_pilon:609712..610335+ (Gracilaria gracilis GNS1m male)
ATGAAGTCGGTTCTGGCAGACTACTTGATTGGATGCGGCGTTAAGATTAA
GACCATGGTGACTTACAACCACCTTGGAAACAATGATATGTACCAGTTGA
CGGATGAGGTTATGTGGAAACCGAAGTCAGCTTCAAAATCACGAGTGATT
GAAGATATTGTTGATTCCAATGGAGTATTGTACAAGGGTGGGAATGACGT
ACCGGATCACGTTGTGGTTGTGAAGTATGTGCCGTTTCTTGGTGATTCGA
AACGCGATGTCTCTGAATACACGTCTGAGACATTCATGGATTGTCACTAC
ACTACAATCATGCACAACGAGTGCTTAGACTCAGCATTGTGTGCACCGCT
AATTCTAGATCTGGCAATCTTCGCAGAGTTGTTCGCTCGGGTGGAGTACT
GTGTGGAAGGCACAAATGGATCGACGAAGGAGATGGTGTATTCAGGTATG
GAAAGTGCACTAAGCGTGTTGGGCTTCTATATGAAGATACCGCGCACACC
AGCTGGAGAACCTATTGTGAATGCGTTGGGGCGACAGAAGGCGTGTATTG
AAAACATGCTCAGGGCGTTAGTAGGACTACAACCAGAACACAACATGTTA
CTCGAAACAAAATGCCCAGCTTGA