Ggra6123.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6123.t1
Unique NameGgra6123.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:606667..608223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34506.g4557
Preferred nameCPSF3L
PFAMsBeta-Casp,Lactamase_B_6,RMMBL
Max annot lvl33208|Metazoa
KEGG koko:K13148
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006366,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031974,GO:0031981,GO:0032039,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043628,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue2.08e-87
EggNOG OGsCOG1236@1|root,KOG1136@2759|Eukaryota,39M92@33154|Opisthokonta,3BFGW@33208|Metazoa,3D195@33213|Bilateria,40BET@6231|Nematoda,1KUR0@119089|Chromadorea,40UZK@6236|Rhabditida
DescriptionBeta-Casp domain
COG categoryA
BRITEko00000,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6123Ggra6123Gracilaria gracilis GNS1m malegenetig00000045_pilon 606667..608223 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6123.t1.stop1Ggra6123.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 606667..606669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6123.t1.CDS1Ggra6123.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 606667..608223 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6123.t1.exon1Ggra6123.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 606667..608223 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6123.t1.start1Ggra6123.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 608221..608223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6123.t1Ggra6123.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 606667..608223 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6123.t1 ID=Ggra6123.t1|Name=Ggra6123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp
MELRVLGAGCEVGRSCILLTIHDRRLLLDCGAHPGFDDENRFPAFQALPA
NLLEEIDAILISHYHFDHACGIPFLTQTLSCPAPVYMTEPTKEFARLMLL
DFVSTSRIRKQHCPFAESDIERTLQDVRLLPLDEDVHIGDRQDILIKTFY
AGHAIGAVMLLVQIAGETVLYSGDYCTKSDGYLRAAHLPFGLYPDVFITE
ATYCNSVRKESLFQQEEVLVDSIVSTIAKEGKVLIPIPAFGKAQGICSML
SRHLESTVLEDVPMYITDGLASKANDLYIKFSGWTTHQRKLCWHCERSQG
GRKRSRFQDACKHNLMENLHPFNRNEHWNLLHQKGAMILFATPGNMSTGI
SHDVFNLWSTHPQNLVIVPSFWFTNTVSPSRVPESEQTGVMPTNVRCRVL
NQISNVHTDKRGIMQICKQVQPKAIVLVHGEKQKVKQFQDEVHSALSVPC
HAPETGEVLQIMNRADGVSMTSFLSSKSSMVSSEWKSIFSSYLQMSGKTT
DPSKPHTSELAVCRSPET*
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spliced messenger RNA

>Ggra6123.t1 ID=Ggra6123.t1|Name=Ggra6123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000045_pilon:606667..608223- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTTCGTGTCTTGGGAGCCGGATGTGAAGTGGGGCGAAGCTGTAT
ACTGTTAACGATCCATGATCGTCGCCTTCTATTGGACTGCGGAGCTCACC
CGGGATTCGATGATGAGAATCGGTTTCCAGCTTTTCAAGCGCTCCCCGCC
AACCTGCTAGAAGAAATCGATGCCATACTCATCTCCCACTATCACTTTGA
CCATGCTTGTGGTATTCCTTTTCTTACTCAAACACTTTCGTGCCCAGCCC
CAGTGTACATGACAGAGCCAACAAAAGAATTTGCTAGACTCATGCTTCTC
GATTTTGTATCGACCTCTAGAATAAGAAAACAACATTGCCCATTCGCTGA
GAGTGATATCGAGAGAACTCTTCAGGACGTACGGTTGCTTCCTCTGGACG
AAGATGTACATATCGGAGACAGGCAAGACATTCTCATCAAAACTTTCTAT
GCGGGTCATGCTATCGGAGCCGTTATGCTCCTCGTTCAAATCGCTGGGGA
GACAGTACTTTATTCTGGTGACTACTGCACCAAATCTGATGGTTATCTGA
GGGCAGCTCATCTTCCGTTTGGTTTATATCCTGATGTGTTCATCACCGAA
GCAACTTATTGCAACTCTGTCCGGAAGGAGAGTCTTTTTCAGCAAGAGGA
GGTCCTGGTAGACAGTATCGTAAGCACTATTGCGAAAGAGGGAAAAGTGT
TGATACCGATTCCTGCTTTCGGAAAGGCACAGGGGATCTGTTCCATGCTT
TCAAGACATTTGGAAAGCACGGTCCTGGAGGACGTACCAATGTATATCAC
CGACGGCCTTGCATCAAAGGCAAATGACTTGTACATTAAGTTCTCTGGGT
GGACCACTCATCAAAGGAAGTTGTGTTGGCATTGCGAGCGAAGCCAAGGT
GGGAGGAAAAGAAGCAGATTTCAGGATGCTTGCAAACATAACCTCATGGA
AAACCTTCACCCGTTTAATCGAAACGAGCACTGGAACCTACTCCATCAAA
AGGGAGCGATGATTCTTTTTGCCACCCCTGGCAACATGTCAACAGGTATA
TCACATGACGTATTCAATCTCTGGAGTACCCATCCACAGAACTTGGTAAT
CGTCCCTTCGTTCTGGTTCACGAATACTGTTTCGCCTTCCCGAGTTCCTG
AAAGCGAACAAACCGGCGTAATGCCAACTAACGTCCGCTGCCGAGTCCTC
AACCAGATCTCCAACGTTCACACAGATAAACGTGGAATTATGCAGATATG
CAAGCAAGTTCAACCGAAAGCCATAGTACTTGTTCATGGAGAGAAACAAA
AAGTAAAACAGTTTCAAGACGAAGTACACAGTGCCTTGAGTGTTCCATGC
CACGCACCCGAAACGGGAGAAGTTTTACAAATCATGAACAGGGCGGATGG
CGTTTCAATGACTTCATTTTTAAGTTCAAAGTCCTCCATGGTTTCCAGTG
AATGGAAATCAATCTTTTCTTCCTACTTACAAATGTCGGGAAAGACAACC
GATCCTTCGAAACCTCATACTTCGGAACTGGCGGTATGCCGAAGTCCCGA
AACATAA
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protein sequence of Ggra6123.t1

>Ggra6123.t1 ID=Ggra6123.t1|Name=Ggra6123.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=519bp
MELRVLGAGCEVGRSCILLTIHDRRLLLDCGAHPGFDDENRFPAFQALPA
NLLEEIDAILISHYHFDHACGIPFLTQTLSCPAPVYMTEPTKEFARLMLL
DFVSTSRIRKQHCPFAESDIERTLQDVRLLPLDEDVHIGDRQDILIKTFY
AGHAIGAVMLLVQIAGETVLYSGDYCTKSDGYLRAAHLPFGLYPDVFITE
ATYCNSVRKESLFQQEEVLVDSIVSTIAKEGKVLIPIPAFGKAQGICSML
SRHLESTVLEDVPMYITDGLASKANDLYIKFSGWTTHQRKLCWHCERSQG
GRKRSRFQDACKHNLMENLHPFNRNEHWNLLHQKGAMILFATPGNMSTGI
SHDVFNLWSTHPQNLVIVPSFWFTNTVSPSRVPESEQTGVMPTNVRCRVL
NQISNVHTDKRGIMQICKQVQPKAIVLVHGEKQKVKQFQDEVHSALSVPC
HAPETGEVLQIMNRADGVSMTSFLSSKSSMVSSEWKSIFSSYLQMSGKTT
DPSKPHTSELAVCRSPET*
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mRNA from alignment at tig00000045_pilon:606667..608223-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6123.t1 ID=Ggra6123.t1|Name=Ggra6123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000045_pilon:606667..608223- (Gracilaria gracilis GNS1m male)
ATGGAGCTTCGTGTCTTGGGAGCCGGATGTGAAGTGGGGCGAAGCTGTAT
ACTGTTAACGATCCATGATCGTCGCCTTCTATTGGACTGCGGAGCTCACC
CGGGATTCGATGATGAGAATCGGTTTCCAGCTTTTCAAGCGCTCCCCGCC
AACCTGCTAGAAGAAATCGATGCCATACTCATCTCCCACTATCACTTTGA
CCATGCTTGTGGTATTCCTTTTCTTACTCAAACACTTTCGTGCCCAGCCC
CAGTGTACATGACAGAGCCAACAAAAGAATTTGCTAGACTCATGCTTCTC
GATTTTGTATCGACCTCTAGAATAAGAAAACAACATTGCCCATTCGCTGA
GAGTGATATCGAGAGAACTCTTCAGGACGTACGGTTGCTTCCTCTGGACG
AAGATGTACATATCGGAGACAGGCAAGACATTCTCATCAAAACTTTCTAT
GCGGGTCATGCTATCGGAGCCGTTATGCTCCTCGTTCAAATCGCTGGGGA
GACAGTACTTTATTCTGGTGACTACTGCACCAAATCTGATGGTTATCTGA
GGGCAGCTCATCTTCCGTTTGGTTTATATCCTGATGTGTTCATCACCGAA
GCAACTTATTGCAACTCTGTCCGGAAGGAGAGTCTTTTTCAGCAAGAGGA
GGTCCTGGTAGACAGTATCGTAAGCACTATTGCGAAAGAGGGAAAAGTGT
TGATACCGATTCCTGCTTTCGGAAAGGCACAGGGGATCTGTTCCATGCTT
TCAAGACATTTGGAAAGCACGGTCCTGGAGGACGTACCAATGTATATCAC
CGACGGCCTTGCATCAAAGGCAAATGACTTGTACATTAAGTTCTCTGGGT
GGACCACTCATCAAAGGAAGTTGTGTTGGCATTGCGAGCGAAGCCAAGGT
GGGAGGAAAAGAAGCAGATTTCAGGATGCTTGCAAACATAACCTCATGGA
AAACCTTCACCCGTTTAATCGAAACGAGCACTGGAACCTACTCCATCAAA
AGGGAGCGATGATTCTTTTTGCCACCCCTGGCAACATGTCAACAGGTATA
TCACATGACGTATTCAATCTCTGGAGTACCCATCCACAGAACTTGGTAAT
CGTCCCTTCGTTCTGGTTCACGAATACTGTTTCGCCTTCCCGAGTTCCTG
AAAGCGAACAAACCGGCGTAATGCCAACTAACGTCCGCTGCCGAGTCCTC
AACCAGATCTCCAACGTTCACACAGATAAACGTGGAATTATGCAGATATG
CAAGCAAGTTCAACCGAAAGCCATAGTACTTGTTCATGGAGAGAAACAAA
AAGTAAAACAGTTTCAAGACGAAGTACACAGTGCCTTGAGTGTTCCATGC
CACGCACCCGAAACGGGAGAAGTTTTACAAATCATGAACAGGGCGGATGG
CGTTTCAATGACTTCATTTTTAAGTTCAAAGTCCTCCATGGTTTCCAGTG
AATGGAAATCAATCTTTTCTTCCTACTTACAAATGTCGGGAAAGACAACC
GATCCTTCGAAACCTCATACTTCGGAACTGGCGGTATGCCGAAGTCCCGA
AACATAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:606667..608223-

>Ggra6123.t1 ID=Ggra6123.t1|Name=Ggra6123.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00000045_pilon:606667..608223- (Gracilaria gracilis GNS1m male)
ATGGAGCTTCGTGTCTTGGGAGCCGGATGTGAAGTGGGGCGAAGCTGTAT
ACTGTTAACGATCCATGATCGTCGCCTTCTATTGGACTGCGGAGCTCACC
CGGGATTCGATGATGAGAATCGGTTTCCAGCTTTTCAAGCGCTCCCCGCC
AACCTGCTAGAAGAAATCGATGCCATACTCATCTCCCACTATCACTTTGA
CCATGCTTGTGGTATTCCTTTTCTTACTCAAACACTTTCGTGCCCAGCCC
CAGTGTACATGACAGAGCCAACAAAAGAATTTGCTAGACTCATGCTTCTC
GATTTTGTATCGACCTCTAGAATAAGAAAACAACATTGCCCATTCGCTGA
GAGTGATATCGAGAGAACTCTTCAGGACGTACGGTTGCTTCCTCTGGACG
AAGATGTACATATCGGAGACAGGCAAGACATTCTCATCAAAACTTTCTAT
GCGGGTCATGCTATCGGAGCCGTTATGCTCCTCGTTCAAATCGCTGGGGA
GACAGTACTTTATTCTGGTGACTACTGCACCAAATCTGATGGTTATCTGA
GGGCAGCTCATCTTCCGTTTGGTTTATATCCTGATGTGTTCATCACCGAA
GCAACTTATTGCAACTCTGTCCGGAAGGAGAGTCTTTTTCAGCAAGAGGA
GGTCCTGGTAGACAGTATCGTAAGCACTATTGCGAAAGAGGGAAAAGTGT
TGATACCGATTCCTGCTTTCGGAAAGGCACAGGGGATCTGTTCCATGCTT
TCAAGACATTTGGAAAGCACGGTCCTGGAGGACGTACCAATGTATATCAC
CGACGGCCTTGCATCAAAGGCAAATGACTTGTACATTAAGTTCTCTGGGT
GGACCACTCATCAAAGGAAGTTGTGTTGGCATTGCGAGCGAAGCCAAGGT
GGGAGGAAAAGAAGCAGATTTCAGGATGCTTGCAAACATAACCTCATGGA
AAACCTTCACCCGTTTAATCGAAACGAGCACTGGAACCTACTCCATCAAA
AGGGAGCGATGATTCTTTTTGCCACCCCTGGCAACATGTCAACAGGTATA
TCACATGACGTATTCAATCTCTGGAGTACCCATCCACAGAACTTGGTAAT
CGTCCCTTCGTTCTGGTTCACGAATACTGTTTCGCCTTCCCGAGTTCCTG
AAAGCGAACAAACCGGCGTAATGCCAACTAACGTCCGCTGCCGAGTCCTC
AACCAGATCTCCAACGTTCACACAGATAAACGTGGAATTATGCAGATATG
CAAGCAAGTTCAACCGAAAGCCATAGTACTTGTTCATGGAGAGAAACAAA
AAGTAAAACAGTTTCAAGACGAAGTACACAGTGCCTTGAGTGTTCCATGC
CACGCACCCGAAACGGGAGAAGTTTTACAAATCATGAACAGGGCGGATGG
CGTTTCAATGACTTCATTTTTAAGTTCAAAGTCCTCCATGGTTTCCAGTG
AATGGAAATCAATCTTTTCTTCCTACTTACAAATGTCGGGAAAGACAACC
GATCCTTCGAAACCTCATACTTCGGAACTGGCGGTATGCCGAAGTCCCGA
AACATAA
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