Ggra6121.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6121.t1
Unique NameGgra6121.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:601614..601985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3694.POPTR_0006s19730.1
PFAMsAcyltransferase
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0019637,GO:0022414,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090407,GO:1901576
Evalue7.91e-13
EggNOG OGsCOG0204@1|root,KOG2848@2759|Eukaryota,37M0C@33090|Viridiplantae,3GDYJ@35493|Streptophyta,4JDAP@91835|fabids
EC2.3.1.51
DescriptionBelongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6121Ggra6121Gracilaria gracilis GNS1m malegenetig00000045_pilon 601614..601985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6121.t1.stop1Ggra6121.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 601614..601616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6121.t1.CDS1Ggra6121.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 601614..601985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6121.t1.exon1Ggra6121.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 601614..601985 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6121.t1.start1Ggra6121.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 601983..601985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6121.t1Ggra6121.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 601614..601985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6121.t1 ID=Ggra6121.t1|Name=Ggra6121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=124bp
MIFVTSNRRGQMAALIACTDALKKGKSVAIFPEGTPRLDGVLASFPSAVF
SAARKSGAPIVPVTINGSFKMFETGFAPVHRPSTPISLTVHETINADSDD
KKTALRVREAIRSRLPSDLRGET*
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spliced messenger RNA

>Ggra6121.t1 ID=Ggra6121.t1|Name=Ggra6121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00000045_pilon:601614..601985- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTTCGTTACCTCTAATCGTCGAGGGCAGATGGCAGCTCTTATCGC
TTGCACAGATGCCCTTAAGAAAGGGAAGAGTGTAGCGATTTTCCCAGAGG
GCACACCTCGCCTGGATGGTGTTCTTGCTTCGTTTCCGTCTGCTGTTTTC
TCCGCCGCTCGGAAATCTGGTGCTCCTATTGTTCCAGTCACCATTAATGG
TTCCTTCAAGATGTTTGAAACTGGTTTCGCGCCTGTGCATCGCCCTTCAA
CACCTATATCTCTCACTGTGCATGAGACTATCAATGCCGATTCCGATGAC
AAGAAGACTGCTCTCAGAGTTCGCGAAGCCATTAGAAGCCGGTTACCAAG
CGATCTTAGAGGCGAAACATGA
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protein sequence of Ggra6121.t1

>Ggra6121.t1 ID=Ggra6121.t1|Name=Ggra6121.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=124bp
MIFVTSNRRGQMAALIACTDALKKGKSVAIFPEGTPRLDGVLASFPSAVF
SAARKSGAPIVPVTINGSFKMFETGFAPVHRPSTPISLTVHETINADSDD
KKTALRVREAIRSRLPSDLRGET*
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mRNA from alignment at tig00000045_pilon:601614..601985-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6121.t1 ID=Ggra6121.t1|Name=Ggra6121.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00000045_pilon:601614..601985- (Gracilaria gracilis GNS1m male)
ATGATTTTCGTTACCTCTAATCGTCGAGGGCAGATGGCAGCTCTTATCGC
TTGCACAGATGCCCTTAAGAAAGGGAAGAGTGTAGCGATTTTCCCAGAGG
GCACACCTCGCCTGGATGGTGTTCTTGCTTCGTTTCCGTCTGCTGTTTTC
TCCGCCGCTCGGAAATCTGGTGCTCCTATTGTTCCAGTCACCATTAATGG
TTCCTTCAAGATGTTTGAAACTGGTTTCGCGCCTGTGCATCGCCCTTCAA
CACCTATATCTCTCACTGTGCATGAGACTATCAATGCCGATTCCGATGAC
AAGAAGACTGCTCTCAGAGTTCGCGAAGCCATTAGAAGCCGGTTACCAAG
CGATCTTAGAGGCGAAACATGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:601614..601985-

>Ggra6121.t1 ID=Ggra6121.t1|Name=Ggra6121.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=372bp|location=Sequence derived from alignment at tig00000045_pilon:601614..601985- (Gracilaria gracilis GNS1m male)
ATGATTTTCGTTACCTCTAATCGTCGAGGGCAGATGGCAGCTCTTATCGC
TTGCACAGATGCCCTTAAGAAAGGGAAGAGTGTAGCGATTTTCCCAGAGG
GCACACCTCGCCTGGATGGTGTTCTTGCTTCGTTTCCGTCTGCTGTTTTC
TCCGCCGCTCGGAAATCTGGTGCTCCTATTGTTCCAGTCACCATTAATGG
TTCCTTCAAGATGTTTGAAACTGGTTTCGCGCCTGTGCATCGCCCTTCAA
CACCTATATCTCTCACTGTGCATGAGACTATCAATGCCGATTCCGATGAC
AAGAAGACTGCTCTCAGAGTTCGCGAAGCCATTAGAAGCCGGTTACCAAG
CGATCTTAGAGGCGAAACATGA
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