Ggra612.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra612.t1
Unique NameGgra612.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:144984..145547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122135.KB893146_gene1748
Preferred namebcp
PFAMsAhpC-TSA
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03564
Evalue1.66e-45
EggNOG OGsCOG1225@1|root,COG1225@2|Bacteria,1RD4R@1224|Proteobacteria,2U6Z9@28211|Alphaproteobacteria
EC1.11.1.15
Descriptionalkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra612Ggra612Gracilaria gracilis GNS1m malegenetig00000203_pilon 144984..145547 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra612.t1.start1Ggra612.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 144984..144986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra612.t1.CDS1Ggra612.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 144984..145547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra612.t1.exon1Ggra612.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 144984..145547 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra612.t1.stop1Ggra612.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 145545..145547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra612.t1Ggra612.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 144984..145547 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra612.t1 ID=Ggra612.t1|Name=Ggra612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MAFVPSLHAPFVRSHYAQISRLPVRRVAAGRTLPSMSLAVGSSIPQFRLP
TDGGKMLSNDDLNKGLGIIYFYPRDATPGCTCEAQDFRNFKPDLEALSAF
VVGVSKDSVESHDAFVSDLDLNFPLISDDGTLCEAFGVWKLRKRGDVEKM
GIERSTFVLKDGVIEKEWRGMKATGHAADVIQALRSM*
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spliced messenger RNA

>Ggra612.t1 ID=Ggra612.t1|Name=Ggra612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000203_pilon:144984..145547+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTTCCGTCGTTGCACGCACCGTTCGTACGTTCTCACTACGC
GCAAATCTCGCGACTGCCTGTGCGTCGAGTCGCTGCGGGACGGACGTTAC
CTTCGATGAGTTTGGCGGTGGGATCTTCCATCCCGCAGTTCAGACTGCCC
ACCGACGGTGGAAAAATGCTCTCCAACGACGATTTGAACAAGGGGCTTGG
CATCATATACTTCTATCCGCGTGACGCCACTCCCGGTTGTACCTGTGAGG
CCCAGGACTTCCGCAATTTCAAGCCCGATTTGGAGGCCCTGAGCGCTTTT
GTCGTCGGTGTCAGTAAGGATTCCGTCGAGAGCCATGACGCCTTTGTGTC
TGATCTCGACCTTAACTTCCCGCTCATCAGTGATGATGGTACGTTATGCG
AGGCGTTTGGCGTGTGGAAGTTGAGGAAGAGAGGCGATGTGGAAAAGATG
GGAATTGAACGATCCACTTTCGTTTTGAAAGACGGTGTTATTGAGAAGGA
ATGGAGGGGAATGAAGGCTACTGGTCATGCTGCTGATGTTATTCAAGCTC
TCAGGTCCATGTAG
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protein sequence of Ggra612.t1

>Ggra612.t1 ID=Ggra612.t1|Name=Ggra612.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MAFVPSLHAPFVRSHYAQISRLPVRRVAAGRTLPSMSLAVGSSIPQFRLP
TDGGKMLSNDDLNKGLGIIYFYPRDATPGCTCEAQDFRNFKPDLEALSAF
VVGVSKDSVESHDAFVSDLDLNFPLISDDGTLCEAFGVWKLRKRGDVEKM
GIERSTFVLKDGVIEKEWRGMKATGHAADVIQALRSM*
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mRNA from alignment at tig00000203_pilon:144984..145547+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra612.t1 ID=Ggra612.t1|Name=Ggra612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000203_pilon:144984..145547+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTTCCGTCGTTGCACGCACCGTTCGTACGTTCTCACTACGC
GCAAATCTCGCGACTGCCTGTGCGTCGAGTCGCTGCGGGACGGACGTTAC
CTTCGATGAGTTTGGCGGTGGGATCTTCCATCCCGCAGTTCAGACTGCCC
ACCGACGGTGGAAAAATGCTCTCCAACGACGATTTGAACAAGGGGCTTGG
CATCATATACTTCTATCCGCGTGACGCCACTCCCGGTTGTACCTGTGAGG
CCCAGGACTTCCGCAATTTCAAGCCCGATTTGGAGGCCCTGAGCGCTTTT
GTCGTCGGTGTCAGTAAGGATTCCGTCGAGAGCCATGACGCCTTTGTGTC
TGATCTCGACCTTAACTTCCCGCTCATCAGTGATGATGGTACGTTATGCG
AGGCGTTTGGCGTGTGGAAGTTGAGGAAGAGAGGCGATGTGGAAAAGATG
GGAATTGAACGATCCACTTTCGTTTTGAAAGACGGTGTTATTGAGAAGGA
ATGGAGGGGAATGAAGGCTACTGGTCATGCTGCTGATGTTATTCAAGCTC
TCAGGTCCATGTAG
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Coding sequence (CDS) from alignment at tig00000203_pilon:144984..145547+

>Ggra612.t1 ID=Ggra612.t1|Name=Ggra612.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000203_pilon:144984..145547+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTTCCGTCGTTGCACGCACCGTTCGTACGTTCTCACTACGC
GCAAATCTCGCGACTGCCTGTGCGTCGAGTCGCTGCGGGACGGACGTTAC
CTTCGATGAGTTTGGCGGTGGGATCTTCCATCCCGCAGTTCAGACTGCCC
ACCGACGGTGGAAAAATGCTCTCCAACGACGATTTGAACAAGGGGCTTGG
CATCATATACTTCTATCCGCGTGACGCCACTCCCGGTTGTACCTGTGAGG
CCCAGGACTTCCGCAATTTCAAGCCCGATTTGGAGGCCCTGAGCGCTTTT
GTCGTCGGTGTCAGTAAGGATTCCGTCGAGAGCCATGACGCCTTTGTGTC
TGATCTCGACCTTAACTTCCCGCTCATCAGTGATGATGGTACGTTATGCG
AGGCGTTTGGCGTGTGGAAGTTGAGGAAGAGAGGCGATGTGGAAAAGATG
GGAATTGAACGATCCACTTTCGTTTTGAAAGACGGTGTTATTGAGAAGGA
ATGGAGGGGAATGAAGGCTACTGGTCATGCTGCTGATGTTATTCAAGCTC
TCAGGTCCATGTAG
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