Ggra6119.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6119.t1
Unique Name	Ggra6119.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	562

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:598078..599763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6119	Ggra6119	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 598078..599763 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6119.t1.start1	Ggra6119.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 598078..598080 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6119.t1.CDS1	Ggra6119.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 598078..599763 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6119.t1.exon1	Ggra6119.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 598078..599763 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6119.t1.stop1	Ggra6119.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 599761..599763 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6119.t1	Ggra6119.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 598078..599763 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:598078..599763+
coding sequence from alignment at tig00000045_pilon:598078..599763+

mRNA sequence

>Ggra6119.t1 ID=Ggra6119.t1|Name=Ggra6119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp
MADATTPTRSSAIPSTRRTSRSATDAKTPSRHGIPTPNRRQSAAAESGIP
TPRRVSGAASVVPRSSTTSRLRTPAQDRSDPSRLPAKSPRVLPDRGTPTL
SGVGPSPSRTPLQASPYARRTSTGASRNNTVNRKLNMGDTNPRRASGASG
TRLASQKPRGAKSFLADRKDASSAAGGRDSLTGIDAINARRESLKVRRES
LAARRESLAARREALKARKESLPDRRDPASDRTEPSSARRESITARRDSL
TTRRDSLNARRESLAARRESLNARRDSLNARRESFKARRGNLNVKRDSLT
GRHDSLTARRENPGVRRDSLNSRRDSAGRRISSGSARVQAGVTALESFRA
ARRASLQAQESENEEENGEIDHAETQPQAKEEKSDQPSDSITYPDRLDPI
VPSSYPSRKGPTISERFNDSDINLENVERLRRSLGGRRSIGPNEEMPEEV
PQLRRNSLESYMDDGQLRQDSPPHLGGITSGIENLHCTNDGIDHDHSYRR
QRSPLKSIEANTDVPKATEWVSKRYSSGENMRRSSILVPDIDDEKAGWPT
DDEDVEDLGAW*

spliced messenger RNA

>Ggra6119.t1 ID=Ggra6119.t1|Name=Ggra6119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000045_pilon:598078..599763+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATGCCACCACACCTACCCGTTCTAGCGCCATACCGTCTACACG
CCGCACTTCTCGAAGTGCCACTGACGCTAAAACGCCATCCAGGCATGGTA
TCCCGACGCCTAACCGCCGACAGAGTGCCGCCGCTGAGAGTGGCATTCCC
ACCCCCCGTCGCGTCTCCGGCGCTGCTTCCGTCGTCCCGCGCTCCAGTAC
TACCTCCAGACTACGCACCCCCGCACAGGACCGCTCTGACCCTTCCAGGC
TGCCGGCAAAATCCCCGCGCGTCCTGCCTGACCGTGGCACTCCTACACTC
TCTGGCGTCGGCCCCAGCCCAAGTCGAACCCCGTTGCAGGCCAGCCCGTA
CGCACGTCGCACCAGCACTGGTGCTTCTCGAAATAACACCGTCAACCGTA
AGCTCAACATGGGAGATACCAATCCACGAAGGGCTTCTGGTGCTTCGGGC
ACCCGTCTTGCCTCTCAGAAACCACGTGGCGCTAAATCATTCCTCGCGGA
CCGAAAAGATGCCTCTTCTGCGGCCGGTGGGAGAGATAGTTTGACTGGAA
TCGATGCCATCAATGCTCGAAGAGAGAGTCTGAAGGTGAGGCGTGAAAGT
CTGGCAGCCAGGCGGGAGAGCCTTGCTGCTCGACGAGAAGCGCTAAAGGC
TAGGAAAGAGAGCCTACCAGACAGGCGAGATCCCGCATCCGACCGAACGG
AACCCTCTTCAGCTAGAAGGGAGAGTATCACTGCCAGAAGAGACAGCCTT
ACCACCAGAAGGGACAGTCTCAACGCTAGAAGAGAAAGTCTTGCTGCTAG
AAGAGAAAGTCTCAATGCTAGAAGAGACAGCCTCAATGCCAGAAGGGAAA
GCTTTAAAGCTCGCCGAGGCAATCTAAATGTGAAACGCGATAGCCTTACA
GGACGCCATGATAGCCTAACCGCTCGTCGTGAGAATCCTGGCGTTCGCCG
TGACAGCCTTAATTCAAGGCGTGATAGCGCCGGTAGACGAATTAGTTCAG
GCTCCGCTAGGGTGCAAGCTGGTGTGACAGCTCTCGAATCCTTCAGGGCT
GCACGAAGAGCATCTTTGCAGGCGCAGGAAAGCGAAAATGAAGAAGAAAA
CGGTGAAATCGACCATGCAGAGACACAGCCACAGGCGAAGGAAGAGAAAT
CGGATCAACCCAGCGATAGCATAACATACCCAGATCGTCTTGACCCTATT
GTGCCGAGCAGCTATCCAAGTCGGAAAGGCCCGACGATCAGCGAAAGGTT
TAATGACTCGGACATTAATCTAGAGAATGTTGAACGCCTCCGCCGTTCCC
TCGGGGGCCGAAGGTCGATTGGTCCAAATGAGGAAATGCCGGAAGAAGTC
CCGCAGTTACGAAGAAATAGCCTCGAGTCCTATATGGACGATGGCCAGTT
GCGACAGGATTCTCCACCACATTTAGGTGGGATCACAAGTGGCATTGAGA
ATCTTCACTGCACAAATGACGGTATTGATCATGATCATTCTTACCGACGC
CAGCGATCGCCACTCAAATCGATTGAGGCAAATACAGACGTACCAAAAGC
AACGGAGTGGGTCTCAAAGAGATATAGTTCCGGAGAGAATATGAGACGCT
CTAGTATTCTCGTTCCGGACATTGACGACGAAAAGGCAGGATGGCCTACA
GATGATGAAGACGTTGAAGATCTTGGAGCCTGGTAA

protein sequence of Ggra6119.t1

>Ggra6119.t1 ID=Ggra6119.t1|Name=Ggra6119.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MADATTPTRSSAIPSTRRTSRSATDAKTPSRHGIPTPNRRQSAAAESGIP
TPRRVSGAASVVPRSSTTSRLRTPAQDRSDPSRLPAKSPRVLPDRGTPTL
SGVGPSPSRTPLQASPYARRTSTGASRNNTVNRKLNMGDTNPRRASGASG
TRLASQKPRGAKSFLADRKDASSAAGGRDSLTGIDAINARRESLKVRRES
LAARRESLAARREALKARKESLPDRRDPASDRTEPSSARRESITARRDSL
TTRRDSLNARRESLAARRESLNARRDSLNARRESFKARRGNLNVKRDSLT
GRHDSLTARRENPGVRRDSLNSRRDSAGRRISSGSARVQAGVTALESFRA
ARRASLQAQESENEEENGEIDHAETQPQAKEEKSDQPSDSITYPDRLDPI
VPSSYPSRKGPTISERFNDSDINLENVERLRRSLGGRRSIGPNEEMPEEV
PQLRRNSLESYMDDGQLRQDSPPHLGGITSGIENLHCTNDGIDHDHSYRR
QRSPLKSIEANTDVPKATEWVSKRYSSGENMRRSSILVPDIDDEKAGWPT
DDEDVEDLGAW*

mRNA from alignment at tig00000045_pilon:598078..599763+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6119.t1 ID=Ggra6119.t1|Name=Ggra6119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000045_pilon:598078..599763+ (Gracilaria gracilis GNS1m male)
ATGGCCGATGCCACCACACCTACCCGTTCTAGCGCCATACCGTCTACACG
CCGCACTTCTCGAAGTGCCACTGACGCTAAAACGCCATCCAGGCATGGTA
TCCCGACGCCTAACCGCCGACAGAGTGCCGCCGCTGAGAGTGGCATTCCC
ACCCCCCGTCGCGTCTCCGGCGCTGCTTCCGTCGTCCCGCGCTCCAGTAC
TACCTCCAGACTACGCACCCCCGCACAGGACCGCTCTGACCCTTCCAGGC
TGCCGGCAAAATCCCCGCGCGTCCTGCCTGACCGTGGCACTCCTACACTC
TCTGGCGTCGGCCCCAGCCCAAGTCGAACCCCGTTGCAGGCCAGCCCGTA
CGCACGTCGCACCAGCACTGGTGCTTCTCGAAATAACACCGTCAACCGTA
AGCTCAACATGGGAGATACCAATCCACGAAGGGCTTCTGGTGCTTCGGGC
ACCCGTCTTGCCTCTCAGAAACCACGTGGCGCTAAATCATTCCTCGCGGA
CCGAAAAGATGCCTCTTCTGCGGCCGGTGGGAGAGATAGTTTGACTGGAA
TCGATGCCATCAATGCTCGAAGAGAGAGTCTGAAGGTGAGGCGTGAAAGT
CTGGCAGCCAGGCGGGAGAGCCTTGCTGCTCGACGAGAAGCGCTAAAGGC
TAGGAAAGAGAGCCTACCAGACAGGCGAGATCCCGCATCCGACCGAACGG
AACCCTCTTCAGCTAGAAGGGAGAGTATCACTGCCAGAAGAGACAGCCTT
ACCACCAGAAGGGACAGTCTCAACGCTAGAAGAGAAAGTCTTGCTGCTAG
AAGAGAAAGTCTCAATGCTAGAAGAGACAGCCTCAATGCCAGAAGGGAAA
GCTTTAAAGCTCGCCGAGGCAATCTAAATGTGAAACGCGATAGCCTTACA
GGACGCCATGATAGCCTAACCGCTCGTCGTGAGAATCCTGGCGTTCGCCG
TGACAGCCTTAATTCAAGGCGTGATAGCGCCGGTAGACGAATTAGTTCAG
GCTCCGCTAGGGTGCAAGCTGGTGTGACAGCTCTCGAATCCTTCAGGGCT
GCACGAAGAGCATCTTTGCAGGCGCAGGAAAGCGAAAATGAAGAAGAAAA
CGGTGAAATCGACCATGCAGAGACACAGCCACAGGCGAAGGAAGAGAAAT
CGGATCAACCCAGCGATAGCATAACATACCCAGATCGTCTTGACCCTATT
GTGCCGAGCAGCTATCCAAGTCGGAAAGGCCCGACGATCAGCGAAAGGTT
TAATGACTCGGACATTAATCTAGAGAATGTTGAACGCCTCCGCCGTTCCC
TCGGGGGCCGAAGGTCGATTGGTCCAAATGAGGAAATGCCGGAAGAAGTC
CCGCAGTTACGAAGAAATAGCCTCGAGTCCTATATGGACGATGGCCAGTT
GCGACAGGATTCTCCACCACATTTAGGTGGGATCACAAGTGGCATTGAGA
ATCTTCACTGCACAAATGACGGTATTGATCATGATCATTCTTACCGACGC
CAGCGATCGCCACTCAAATCGATTGAGGCAAATACAGACGTACCAAAAGC
AACGGAGTGGGTCTCAAAGAGATATAGTTCCGGAGAGAATATGAGACGCT
CTAGTATTCTCGTTCCGGACATTGACGACGAAAAGGCAGGATGGCCTACA
GATGATGAAGACGTTGAAGATCTTGGAGCCTGGTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:598078..599763+

>Ggra6119.t1 ID=Ggra6119.t1|Name=Ggra6119.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00000045_pilon:598078..599763+ (Gracilaria gracilis GNS1m male)
ATGGCCGATGCCACCACACCTACCCGTTCTAGCGCCATACCGTCTACACG
CCGCACTTCTCGAAGTGCCACTGACGCTAAAACGCCATCCAGGCATGGTA
TCCCGACGCCTAACCGCCGACAGAGTGCCGCCGCTGAGAGTGGCATTCCC
ACCCCCCGTCGCGTCTCCGGCGCTGCTTCCGTCGTCCCGCGCTCCAGTAC
TACCTCCAGACTACGCACCCCCGCACAGGACCGCTCTGACCCTTCCAGGC
TGCCGGCAAAATCCCCGCGCGTCCTGCCTGACCGTGGCACTCCTACACTC
TCTGGCGTCGGCCCCAGCCCAAGTCGAACCCCGTTGCAGGCCAGCCCGTA
CGCACGTCGCACCAGCACTGGTGCTTCTCGAAATAACACCGTCAACCGTA
AGCTCAACATGGGAGATACCAATCCACGAAGGGCTTCTGGTGCTTCGGGC
ACCCGTCTTGCCTCTCAGAAACCACGTGGCGCTAAATCATTCCTCGCGGA
CCGAAAAGATGCCTCTTCTGCGGCCGGTGGGAGAGATAGTTTGACTGGAA
TCGATGCCATCAATGCTCGAAGAGAGAGTCTGAAGGTGAGGCGTGAAAGT
CTGGCAGCCAGGCGGGAGAGCCTTGCTGCTCGACGAGAAGCGCTAAAGGC
TAGGAAAGAGAGCCTACCAGACAGGCGAGATCCCGCATCCGACCGAACGG
AACCCTCTTCAGCTAGAAGGGAGAGTATCACTGCCAGAAGAGACAGCCTT
ACCACCAGAAGGGACAGTCTCAACGCTAGAAGAGAAAGTCTTGCTGCTAG
AAGAGAAAGTCTCAATGCTAGAAGAGACAGCCTCAATGCCAGAAGGGAAA
GCTTTAAAGCTCGCCGAGGCAATCTAAATGTGAAACGCGATAGCCTTACA
GGACGCCATGATAGCCTAACCGCTCGTCGTGAGAATCCTGGCGTTCGCCG
TGACAGCCTTAATTCAAGGCGTGATAGCGCCGGTAGACGAATTAGTTCAG
GCTCCGCTAGGGTGCAAGCTGGTGTGACAGCTCTCGAATCCTTCAGGGCT
GCACGAAGAGCATCTTTGCAGGCGCAGGAAAGCGAAAATGAAGAAGAAAA
CGGTGAAATCGACCATGCAGAGACACAGCCACAGGCGAAGGAAGAGAAAT
CGGATCAACCCAGCGATAGCATAACATACCCAGATCGTCTTGACCCTATT
GTGCCGAGCAGCTATCCAAGTCGGAAAGGCCCGACGATCAGCGAAAGGTT
TAATGACTCGGACATTAATCTAGAGAATGTTGAACGCCTCCGCCGTTCCC
TCGGGGGCCGAAGGTCGATTGGTCCAAATGAGGAAATGCCGGAAGAAGTC
CCGCAGTTACGAAGAAATAGCCTCGAGTCCTATATGGACGATGGCCAGTT
GCGACAGGATTCTCCACCACATTTAGGTGGGATCACAAGTGGCATTGAGA
ATCTTCACTGCACAAATGACGGTATTGATCATGATCATTCTTACCGACGC
CAGCGATCGCCACTCAAATCGATTGAGGCAAATACAGACGTACCAAAAGC
AACGGAGTGGGTCTCAAAGAGATATAGTTCCGGAGAGAATATGAGACGCT
CTAGTATTCTCGTTCCGGACATTGACGACGAAAAGGCAGGATGGCCTACA
GATGATGAAGACGTTGAAGATCTTGGAGCCTGGTAA