Ggra6115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6115.t1
Unique NameGgra6115.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:590114..591196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000022363
PFAMsC2,Copine
Max annot lvl121069|Pythiales
Evalue4.42e-08
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,1MF6I@121069|Pythiales
DescriptionCopine. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6115Ggra6115Gracilaria gracilis GNS1m malegenetig00000045_pilon 590114..591196 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6115.t1.stop1Ggra6115.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 590114..590116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6115.t1.CDS1Ggra6115.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 590114..591196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6115.t1.exon1Ggra6115.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 590114..591196 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6115.t1.start1Ggra6115.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 591194..591196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6115.t1Ggra6115.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 590114..591196 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6115.t1 ID=Ggra6115.t1|Name=Ggra6115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MKHVELFLSASTSSEQTDRKARTFAVVFTQHGFENEFEQLGRTETISHSD
NLHYCTSFQVPYNGRFPDETVLRFELYHRRTEEIEKLTEHTQLGKATLSL
PDLLLAPGNHLTTQLSHPSLEKKVGVLTVSAEKVQMDSAESQSDVLFDLS
TSVLRRKDWNKTLLHQRYELKRAHRHTDMEGHTVWLPIYRSDRIGKQRDS
NTTIEFTTANVKYRHLCNGDDERQLKICLYATAPTCKRNTSEVLLGSVTF
CLRDICELDPTEEVLSLESNVEGSEDAGHVAIVKAEPTDYGSHFSLHVNY
ENTVKYSIGGSQDRRKPMQKGKKRLSMSRLSIGRGKSSPGGAKLPAINSI
ENLFKHQPTR*
back to top

spliced messenger RNA

>Ggra6115.t1 ID=Ggra6115.t1|Name=Ggra6115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000045_pilon:590114..591196- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACACGTCGAGCTCTTTCTTTCTGCTTCAACCAGCTCCGAGCAAAC
CGACAGAAAAGCCCGAACCTTTGCCGTCGTCTTCACGCAGCATGGCTTCG
AGAACGAATTTGAACAACTAGGCAGAACCGAGACCATCTCCCACTCAGAC
AACCTTCATTATTGCACTTCTTTTCAGGTACCATATAATGGCCGATTTCC
TGATGAAACAGTGCTCAGATTTGAGCTGTACCACCGACGGACCGAGGAAA
TAGAGAAGTTAACTGAGCACACTCAGCTTGGCAAAGCAACTTTATCCCTT
CCTGACCTTCTCTTGGCGCCTGGAAATCACCTCACTACCCAGCTTTCACA
TCCGTCTTTAGAGAAGAAAGTTGGCGTGTTAACTGTAAGCGCGGAGAAAG
TGCAGATGGACAGCGCAGAAAGCCAGTCCGATGTCCTTTTTGATCTTTCT
ACAAGTGTGCTGAGAAGGAAGGACTGGAATAAAACGCTGCTTCATCAACG
ATATGAGTTGAAAAGAGCGCATAGGCATACTGACATGGAAGGTCATACTG
TCTGGCTTCCGATTTATAGGAGCGATCGTATTGGCAAGCAAAGGGATTCA
AACACCACCATTGAATTCACAACAGCTAATGTGAAGTATCGTCATTTATG
TAATGGAGATGATGAACGACAGTTGAAAATCTGCTTGTATGCCACTGCAC
CTACATGCAAACGCAATACTAGCGAGGTGCTACTGGGATCCGTGACATTT
TGTCTTCGTGATATCTGTGAACTTGATCCAACGGAGGAAGTCTTGTCACT
CGAAAGCAACGTAGAGGGTTCTGAAGATGCGGGTCATGTAGCTATAGTCA
AGGCGGAACCCACGGATTACGGAAGTCACTTTTCTCTGCATGTGAACTAT
GAAAACACAGTCAAGTATTCGATCGGCGGATCGCAGGACAGGCGAAAACC
TATGCAGAAAGGCAAAAAGAGACTGTCGATGTCCAGGTTATCGATTGGTC
GAGGCAAATCTAGTCCTGGTGGCGCCAAGCTTCCTGCTATTAATTCAATA
GAAAATCTGTTCAAACATCAACCCACTCGGTGA
back to top

protein sequence of Ggra6115.t1

>Ggra6115.t1 ID=Ggra6115.t1|Name=Ggra6115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MKHVELFLSASTSSEQTDRKARTFAVVFTQHGFENEFEQLGRTETISHSD
NLHYCTSFQVPYNGRFPDETVLRFELYHRRTEEIEKLTEHTQLGKATLSL
PDLLLAPGNHLTTQLSHPSLEKKVGVLTVSAEKVQMDSAESQSDVLFDLS
TSVLRRKDWNKTLLHQRYELKRAHRHTDMEGHTVWLPIYRSDRIGKQRDS
NTTIEFTTANVKYRHLCNGDDERQLKICLYATAPTCKRNTSEVLLGSVTF
CLRDICELDPTEEVLSLESNVEGSEDAGHVAIVKAEPTDYGSHFSLHVNY
ENTVKYSIGGSQDRRKPMQKGKKRLSMSRLSIGRGKSSPGGAKLPAINSI
ENLFKHQPTR*
back to top

mRNA from alignment at tig00000045_pilon:590114..591196-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6115.t1 ID=Ggra6115.t1|Name=Ggra6115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000045_pilon:590114..591196- (Gracilaria gracilis GNS1m male)
ATGAAACACGTCGAGCTCTTTCTTTCTGCTTCAACCAGCTCCGAGCAAAC
CGACAGAAAAGCCCGAACCTTTGCCGTCGTCTTCACGCAGCATGGCTTCG
AGAACGAATTTGAACAACTAGGCAGAACCGAGACCATCTCCCACTCAGAC
AACCTTCATTATTGCACTTCTTTTCAGGTACCATATAATGGCCGATTTCC
TGATGAAACAGTGCTCAGATTTGAGCTGTACCACCGACGGACCGAGGAAA
TAGAGAAGTTAACTGAGCACACTCAGCTTGGCAAAGCAACTTTATCCCTT
CCTGACCTTCTCTTGGCGCCTGGAAATCACCTCACTACCCAGCTTTCACA
TCCGTCTTTAGAGAAGAAAGTTGGCGTGTTAACTGTAAGCGCGGAGAAAG
TGCAGATGGACAGCGCAGAAAGCCAGTCCGATGTCCTTTTTGATCTTTCT
ACAAGTGTGCTGAGAAGGAAGGACTGGAATAAAACGCTGCTTCATCAACG
ATATGAGTTGAAAAGAGCGCATAGGCATACTGACATGGAAGGTCATACTG
TCTGGCTTCCGATTTATAGGAGCGATCGTATTGGCAAGCAAAGGGATTCA
AACACCACCATTGAATTCACAACAGCTAATGTGAAGTATCGTCATTTATG
TAATGGAGATGATGAACGACAGTTGAAAATCTGCTTGTATGCCACTGCAC
CTACATGCAAACGCAATACTAGCGAGGTGCTACTGGGATCCGTGACATTT
TGTCTTCGTGATATCTGTGAACTTGATCCAACGGAGGAAGTCTTGTCACT
CGAAAGCAACGTAGAGGGTTCTGAAGATGCGGGTCATGTAGCTATAGTCA
AGGCGGAACCCACGGATTACGGAAGTCACTTTTCTCTGCATGTGAACTAT
GAAAACACAGTCAAGTATTCGATCGGCGGATCGCAGGACAGGCGAAAACC
TATGCAGAAAGGCAAAAAGAGACTGTCGATGTCCAGGTTATCGATTGGTC
GAGGCAAATCTAGTCCTGGTGGCGCCAAGCTTCCTGCTATTAATTCAATA
GAAAATCTGTTCAAACATCAACCCACTCGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000045_pilon:590114..591196-

>Ggra6115.t1 ID=Ggra6115.t1|Name=Ggra6115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000045_pilon:590114..591196- (Gracilaria gracilis GNS1m male)
ATGAAACACGTCGAGCTCTTTCTTTCTGCTTCAACCAGCTCCGAGCAAAC
CGACAGAAAAGCCCGAACCTTTGCCGTCGTCTTCACGCAGCATGGCTTCG
AGAACGAATTTGAACAACTAGGCAGAACCGAGACCATCTCCCACTCAGAC
AACCTTCATTATTGCACTTCTTTTCAGGTACCATATAATGGCCGATTTCC
TGATGAAACAGTGCTCAGATTTGAGCTGTACCACCGACGGACCGAGGAAA
TAGAGAAGTTAACTGAGCACACTCAGCTTGGCAAAGCAACTTTATCCCTT
CCTGACCTTCTCTTGGCGCCTGGAAATCACCTCACTACCCAGCTTTCACA
TCCGTCTTTAGAGAAGAAAGTTGGCGTGTTAACTGTAAGCGCGGAGAAAG
TGCAGATGGACAGCGCAGAAAGCCAGTCCGATGTCCTTTTTGATCTTTCT
ACAAGTGTGCTGAGAAGGAAGGACTGGAATAAAACGCTGCTTCATCAACG
ATATGAGTTGAAAAGAGCGCATAGGCATACTGACATGGAAGGTCATACTG
TCTGGCTTCCGATTTATAGGAGCGATCGTATTGGCAAGCAAAGGGATTCA
AACACCACCATTGAATTCACAACAGCTAATGTGAAGTATCGTCATTTATG
TAATGGAGATGATGAACGACAGTTGAAAATCTGCTTGTATGCCACTGCAC
CTACATGCAAACGCAATACTAGCGAGGTGCTACTGGGATCCGTGACATTT
TGTCTTCGTGATATCTGTGAACTTGATCCAACGGAGGAAGTCTTGTCACT
CGAAAGCAACGTAGAGGGTTCTGAAGATGCGGGTCATGTAGCTATAGTCA
AGGCGGAACCCACGGATTACGGAAGTCACTTTTCTCTGCATGTGAACTAT
GAAAACACAGTCAAGTATTCGATCGGCGGATCGCAGGACAGGCGAAAACC
TATGCAGAAAGGCAAAAAGAGACTGTCGATGTCCAGGTTATCGATTGGTC
GAGGCAAATCTAGTCCTGGTGGCGCCAAGCTTCCTGCTATTAATTCAATA
GAAAATCTGTTCAAACATCAACCCACTCGGTGA
back to top