Ggra6111.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6111.t1
Unique Name	Ggra6111.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	793

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:577934..580312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo108389
PFAMs	Peptidase_S9,Peptidase_S9_N
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K01354
KEGG Pathway	ko05142,ko05143,map05142,map05143
Evalue	1.1e-247
EggNOG OGs	COG1505@1\|root,KOG2237@2759\|Eukaryota,3Q8HE@4776\|Peronosporales
EC	3.4.21.83
Description	Prolyl oligopeptidase, N-terminal beta-propeller domain
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6111	Ggra6111	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 577934..580312 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6111.t1.start1	Ggra6111.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 577934..577936 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6111.t1.CDS1	Ggra6111.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 577934..580312 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6111.t1.exon1	Ggra6111.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 577934..580312 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6111.t1.stop1	Ggra6111.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 580310..580312 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6111.t1	Ggra6111.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 577934..580312 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:577934..580312+
coding sequence from alignment at tig00000045_pilon:577934..580312+

mRNA sequence

>Ggra6111.t1 ID=Ggra6111.t1|Name=Ggra6111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=793bp
MSGECSRHAKHRSIRARPAASPGGAAPDAAIAASSLMTAPAQSATPSPLS
LGLPRLAAAAGIGFAAVALEYLRRKKRGAVRSTPPVPLEKPHDVVFGKVD
DKFHGDGPLIDPPELVSDPFFWMRDDDRKHPQVLQHLREENAYTNYMTLS
NRPFVQRVYKELLSHYVETDSTVPVKARHYVYYVRTVKGKSYQYFCRKPI
VDGVPATEQITLDVNRLAQGKKHCNVGAISVSPDDNILAYAVDFSGYETF
DIYFKDLRTGQLLEQDTIRGTAGDIEWGRDNSSLYYTTFDESHRPYKLWC
HVMRTGQPSDAKLPDDSCLYTEKDTEFYLSFDKSLSHRFLIVSSSASTLS
ESRFLDLDNPDAGLKLFRERNPDVLYAVWHATDNFFYVVTNVEGATNFKL
MRTTTNAPDVWTEFLPYDRDVKINSIQSFKSFAVMSGRKDGYEQLWVLPE
HDLRQMYLLEAEETAHVISIGNNHEYESESFRYVYSSLTTPNRDYEYDIN
SKESTCLKEQKVPGYSRELYKTERLQATSADGTTVPISLVYNSKALSQDG
PNKLHLYGYGSYEISIDPSFSMTRLPMLDRGVIYAIAHIRGGGEFGREWY
EAARFETKAKTFEDFCACAEHLIEVGKTTPRLLSIEGRSAGGLLMGAVLN
MRPELFKAAIAGVPFVDVLNTMSDPSIPLTTGEWQEWGNPHQRKYFDAIK
QYCPYSNVGPKPYPAVLILAGLYDPRVMYSEPMKWAAKLRKYTTRSDPIL
LKVDMSSGHFSASNRYSFLSEKAFDMAWVLKQLDAPEDPTCS*

spliced messenger RNA

>Ggra6111.t1 ID=Ggra6111.t1|Name=Ggra6111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2379bp|location=Sequence derived from alignment at tig00000045_pilon:577934..580312+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGGCGAGTGTTCGCGCCACGCAAAGCATCGCTCTATTCGTGCACG
CCCCGCCGCGTCGCCGGGTGGCGCTGCGCCCGACGCTGCCATTGCTGCCT
CGTCGCTGATGACCGCCCCTGCGCAGTCGGCCACGCCGTCGCCGCTCTCG
CTAGGCTTGCCGCGCTTGGCCGCCGCCGCCGGCATTGGATTCGCCGCCGT
CGCGCTGGAGTACCTGCGCCGGAAGAAGAGGGGTGCTGTTCGATCCACGC
CGCCTGTCCCGCTTGAGAAGCCGCATGACGTCGTGTTTGGTAAGGTTGAC
GATAAATTCCATGGCGACGGCCCGCTCATTGATCCGCCAGAGCTCGTCTC
GGATCCGTTCTTCTGGATGCGTGATGATGACCGCAAGCACCCGCAGGTGC
TGCAGCACCTTCGCGAGGAAAATGCCTACACCAATTACATGACCTTGTCC
AATCGCCCCTTTGTTCAACGTGTGTACAAGGAGCTCTTGTCTCACTACGT
CGAGACCGATTCCACCGTCCCGGTTAAGGCCAGGCACTATGTGTACTACG
TGAGAACTGTCAAAGGAAAGAGTTACCAGTACTTTTGTCGCAAGCCCATT
GTTGATGGCGTTCCCGCCACCGAGCAGATCACGCTCGATGTCAATCGCCT
GGCACAGGGCAAGAAGCACTGTAACGTTGGTGCCATCTCTGTTAGTCCTG
ATGACAACATTTTGGCCTACGCGGTCGACTTTTCCGGCTACGAGACGTTT
GACATCTACTTTAAGGATCTCCGCACAGGCCAACTTTTGGAACAAGATAC
TATCCGCGGCACTGCGGGTGATATCGAATGGGGCCGTGACAATTCTTCTT
TGTACTACACCACGTTTGACGAGTCACACCGTCCGTACAAATTATGGTGC
CATGTGATGCGCACTGGTCAACCCTCGGATGCTAAGCTACCGGACGATTC
TTGCCTGTACACAGAGAAAGACACCGAGTTCTATTTGAGCTTTGACAAGT
CGCTCTCGCACCGCTTCCTCATCGTCAGCTCCTCTGCTAGCACGCTGTCA
GAGAGTCGCTTCCTTGATTTGGACAATCCGGATGCAGGACTTAAGCTGTT
CCGCGAGCGAAACCCCGACGTGCTATATGCAGTATGGCATGCGACTGACA
ACTTTTTTTATGTTGTCACTAACGTTGAAGGTGCCACTAACTTCAAACTT
ATGCGCACCACAACCAACGCCCCTGATGTGTGGACTGAATTTCTTCCTTA
TGACAGGGACGTCAAGATCAACTCAATCCAGTCTTTTAAATCTTTCGCGG
TAATGTCTGGTAGAAAGGACGGTTATGAACAGCTATGGGTCCTTCCAGAA
CATGACCTCCGCCAAATGTATCTTCTTGAAGCAGAGGAGACGGCACATGT
TATCAGTATTGGAAATAACCACGAGTACGAATCCGAATCCTTCCGCTACG
TCTACTCCTCCCTCACCACTCCAAATCGGGATTACGAGTATGACATCAAC
TCCAAAGAAAGCACTTGCCTTAAGGAACAGAAAGTGCCCGGATACAGCAG
GGAGCTGTACAAAACAGAACGCCTGCAAGCTACAAGCGCAGACGGCACGA
CCGTACCAATCTCGTTGGTATACAATTCCAAAGCGCTGTCACAAGATGGG
CCAAACAAGTTGCATTTGTACGGATATGGTTCGTACGAGATATCCATTGA
TCCTTCCTTCTCTATGACAAGGCTTCCGATGCTTGATCGGGGTGTAATTT
ACGCAATTGCACATATACGAGGCGGAGGGGAATTTGGCAGAGAGTGGTAT
GAGGCGGCGAGGTTTGAAACCAAGGCAAAGACATTCGAAGATTTTTGTGC
GTGTGCAGAACATCTGATAGAGGTCGGGAAGACCACACCAAGGCTTTTGT
CAATCGAAGGGCGCTCTGCCGGGGGTCTTTTGATGGGTGCGGTGCTGAAC
ATGCGCCCAGAGCTTTTCAAGGCGGCCATTGCTGGTGTTCCTTTCGTGGA
CGTGTTGAACACCATGTCCGACCCGTCGATTCCTTTGACTACGGGAGAGT
GGCAAGAGTGGGGCAATCCGCATCAAAGAAAGTATTTTGATGCTATCAAA
CAGTATTGTCCGTATTCAAACGTGGGACCAAAGCCGTACCCGGCTGTGCT
TATCCTGGCCGGACTGTATGATCCGCGGGTGATGTATTCTGAACCGATGA
AATGGGCGGCCAAGTTGAGGAAGTACACAACGAGAAGTGACCCTATTCTG
CTGAAGGTAGATATGTCTAGCGGTCATTTTTCGGCGTCAAACAGGTATAG
TTTCCTGTCTGAAAAGGCGTTTGATATGGCATGGGTGCTCAAGCAGCTGG
ATGCTCCAGAGGATCCGACCTGCTCGTAG

protein sequence of Ggra6111.t1

>Ggra6111.t1 ID=Ggra6111.t1|Name=Ggra6111.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=793bp
MSGECSRHAKHRSIRARPAASPGGAAPDAAIAASSLMTAPAQSATPSPLS
LGLPRLAAAAGIGFAAVALEYLRRKKRGAVRSTPPVPLEKPHDVVFGKVD
DKFHGDGPLIDPPELVSDPFFWMRDDDRKHPQVLQHLREENAYTNYMTLS
NRPFVQRVYKELLSHYVETDSTVPVKARHYVYYVRTVKGKSYQYFCRKPI
VDGVPATEQITLDVNRLAQGKKHCNVGAISVSPDDNILAYAVDFSGYETF
DIYFKDLRTGQLLEQDTIRGTAGDIEWGRDNSSLYYTTFDESHRPYKLWC
HVMRTGQPSDAKLPDDSCLYTEKDTEFYLSFDKSLSHRFLIVSSSASTLS
ESRFLDLDNPDAGLKLFRERNPDVLYAVWHATDNFFYVVTNVEGATNFKL
MRTTTNAPDVWTEFLPYDRDVKINSIQSFKSFAVMSGRKDGYEQLWVLPE
HDLRQMYLLEAEETAHVISIGNNHEYESESFRYVYSSLTTPNRDYEYDIN
SKESTCLKEQKVPGYSRELYKTERLQATSADGTTVPISLVYNSKALSQDG
PNKLHLYGYGSYEISIDPSFSMTRLPMLDRGVIYAIAHIRGGGEFGREWY
EAARFETKAKTFEDFCACAEHLIEVGKTTPRLLSIEGRSAGGLLMGAVLN
MRPELFKAAIAGVPFVDVLNTMSDPSIPLTTGEWQEWGNPHQRKYFDAIK
QYCPYSNVGPKPYPAVLILAGLYDPRVMYSEPMKWAAKLRKYTTRSDPIL
LKVDMSSGHFSASNRYSFLSEKAFDMAWVLKQLDAPEDPTCS*

mRNA from alignment at tig00000045_pilon:577934..580312+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6111.t1 ID=Ggra6111.t1|Name=Ggra6111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2379bp|location=Sequence derived from alignment at tig00000045_pilon:577934..580312+ (Gracilaria gracilis GNS1m male)
ATGAGTGGCGAGTGTTCGCGCCACGCAAAGCATCGCTCTATTCGTGCACG
CCCCGCCGCGTCGCCGGGTGGCGCTGCGCCCGACGCTGCCATTGCTGCCT
CGTCGCTGATGACCGCCCCTGCGCAGTCGGCCACGCCGTCGCCGCTCTCG
CTAGGCTTGCCGCGCTTGGCCGCCGCCGCCGGCATTGGATTCGCCGCCGT
CGCGCTGGAGTACCTGCGCCGGAAGAAGAGGGGTGCTGTTCGATCCACGC
CGCCTGTCCCGCTTGAGAAGCCGCATGACGTCGTGTTTGGTAAGGTTGAC
GATAAATTCCATGGCGACGGCCCGCTCATTGATCCGCCAGAGCTCGTCTC
GGATCCGTTCTTCTGGATGCGTGATGATGACCGCAAGCACCCGCAGGTGC
TGCAGCACCTTCGCGAGGAAAATGCCTACACCAATTACATGACCTTGTCC
AATCGCCCCTTTGTTCAACGTGTGTACAAGGAGCTCTTGTCTCACTACGT
CGAGACCGATTCCACCGTCCCGGTTAAGGCCAGGCACTATGTGTACTACG
TGAGAACTGTCAAAGGAAAGAGTTACCAGTACTTTTGTCGCAAGCCCATT
GTTGATGGCGTTCCCGCCACCGAGCAGATCACGCTCGATGTCAATCGCCT
GGCACAGGGCAAGAAGCACTGTAACGTTGGTGCCATCTCTGTTAGTCCTG
ATGACAACATTTTGGCCTACGCGGTCGACTTTTCCGGCTACGAGACGTTT
GACATCTACTTTAAGGATCTCCGCACAGGCCAACTTTTGGAACAAGATAC
TATCCGCGGCACTGCGGGTGATATCGAATGGGGCCGTGACAATTCTTCTT
TGTACTACACCACGTTTGACGAGTCACACCGTCCGTACAAATTATGGTGC
CATGTGATGCGCACTGGTCAACCCTCGGATGCTAAGCTACCGGACGATTC
TTGCCTGTACACAGAGAAAGACACCGAGTTCTATTTGAGCTTTGACAAGT
CGCTCTCGCACCGCTTCCTCATCGTCAGCTCCTCTGCTAGCACGCTGTCA
GAGAGTCGCTTCCTTGATTTGGACAATCCGGATGCAGGACTTAAGCTGTT
CCGCGAGCGAAACCCCGACGTGCTATATGCAGTATGGCATGCGACTGACA
ACTTTTTTTATGTTGTCACTAACGTTGAAGGTGCCACTAACTTCAAACTT
ATGCGCACCACAACCAACGCCCCTGATGTGTGGACTGAATTTCTTCCTTA
TGACAGGGACGTCAAGATCAACTCAATCCAGTCTTTTAAATCTTTCGCGG
TAATGTCTGGTAGAAAGGACGGTTATGAACAGCTATGGGTCCTTCCAGAA
CATGACCTCCGCCAAATGTATCTTCTTGAAGCAGAGGAGACGGCACATGT
TATCAGTATTGGAAATAACCACGAGTACGAATCCGAATCCTTCCGCTACG
TCTACTCCTCCCTCACCACTCCAAATCGGGATTACGAGTATGACATCAAC
TCCAAAGAAAGCACTTGCCTTAAGGAACAGAAAGTGCCCGGATACAGCAG
GGAGCTGTACAAAACAGAACGCCTGCAAGCTACAAGCGCAGACGGCACGA
CCGTACCAATCTCGTTGGTATACAATTCCAAAGCGCTGTCACAAGATGGG
CCAAACAAGTTGCATTTGTACGGATATGGTTCGTACGAGATATCCATTGA
TCCTTCCTTCTCTATGACAAGGCTTCCGATGCTTGATCGGGGTGTAATTT
ACGCAATTGCACATATACGAGGCGGAGGGGAATTTGGCAGAGAGTGGTAT
GAGGCGGCGAGGTTTGAAACCAAGGCAAAGACATTCGAAGATTTTTGTGC
GTGTGCAGAACATCTGATAGAGGTCGGGAAGACCACACCAAGGCTTTTGT
CAATCGAAGGGCGCTCTGCCGGGGGTCTTTTGATGGGTGCGGTGCTGAAC
ATGCGCCCAGAGCTTTTCAAGGCGGCCATTGCTGGTGTTCCTTTCGTGGA
CGTGTTGAACACCATGTCCGACCCGTCGATTCCTTTGACTACGGGAGAGT
GGCAAGAGTGGGGCAATCCGCATCAAAGAAAGTATTTTGATGCTATCAAA
CAGTATTGTCCGTATTCAAACGTGGGACCAAAGCCGTACCCGGCTGTGCT
TATCCTGGCCGGACTGTATGATCCGCGGGTGATGTATTCTGAACCGATGA
AATGGGCGGCCAAGTTGAGGAAGTACACAACGAGAAGTGACCCTATTCTG
CTGAAGGTAGATATGTCTAGCGGTCATTTTTCGGCGTCAAACAGGTATAG
TTTCCTGTCTGAAAAGGCGTTTGATATGGCATGGGTGCTCAAGCAGCTGG
ATGCTCCAGAGGATCCGACCTGCTCGTAG

Coding sequence (CDS) from alignment at tig00000045_pilon:577934..580312+

>Ggra6111.t1 ID=Ggra6111.t1|Name=Ggra6111.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2379bp|location=Sequence derived from alignment at tig00000045_pilon:577934..580312+ (Gracilaria gracilis GNS1m male)
ATGAGTGGCGAGTGTTCGCGCCACGCAAAGCATCGCTCTATTCGTGCACG
CCCCGCCGCGTCGCCGGGTGGCGCTGCGCCCGACGCTGCCATTGCTGCCT
CGTCGCTGATGACCGCCCCTGCGCAGTCGGCCACGCCGTCGCCGCTCTCG
CTAGGCTTGCCGCGCTTGGCCGCCGCCGCCGGCATTGGATTCGCCGCCGT
CGCGCTGGAGTACCTGCGCCGGAAGAAGAGGGGTGCTGTTCGATCCACGC
CGCCTGTCCCGCTTGAGAAGCCGCATGACGTCGTGTTTGGTAAGGTTGAC
GATAAATTCCATGGCGACGGCCCGCTCATTGATCCGCCAGAGCTCGTCTC
GGATCCGTTCTTCTGGATGCGTGATGATGACCGCAAGCACCCGCAGGTGC
TGCAGCACCTTCGCGAGGAAAATGCCTACACCAATTACATGACCTTGTCC
AATCGCCCCTTTGTTCAACGTGTGTACAAGGAGCTCTTGTCTCACTACGT
CGAGACCGATTCCACCGTCCCGGTTAAGGCCAGGCACTATGTGTACTACG
TGAGAACTGTCAAAGGAAAGAGTTACCAGTACTTTTGTCGCAAGCCCATT
GTTGATGGCGTTCCCGCCACCGAGCAGATCACGCTCGATGTCAATCGCCT
GGCACAGGGCAAGAAGCACTGTAACGTTGGTGCCATCTCTGTTAGTCCTG
ATGACAACATTTTGGCCTACGCGGTCGACTTTTCCGGCTACGAGACGTTT
GACATCTACTTTAAGGATCTCCGCACAGGCCAACTTTTGGAACAAGATAC
TATCCGCGGCACTGCGGGTGATATCGAATGGGGCCGTGACAATTCTTCTT
TGTACTACACCACGTTTGACGAGTCACACCGTCCGTACAAATTATGGTGC
CATGTGATGCGCACTGGTCAACCCTCGGATGCTAAGCTACCGGACGATTC
TTGCCTGTACACAGAGAAAGACACCGAGTTCTATTTGAGCTTTGACAAGT
CGCTCTCGCACCGCTTCCTCATCGTCAGCTCCTCTGCTAGCACGCTGTCA
GAGAGTCGCTTCCTTGATTTGGACAATCCGGATGCAGGACTTAAGCTGTT
CCGCGAGCGAAACCCCGACGTGCTATATGCAGTATGGCATGCGACTGACA
ACTTTTTTTATGTTGTCACTAACGTTGAAGGTGCCACTAACTTCAAACTT
ATGCGCACCACAACCAACGCCCCTGATGTGTGGACTGAATTTCTTCCTTA
TGACAGGGACGTCAAGATCAACTCAATCCAGTCTTTTAAATCTTTCGCGG
TAATGTCTGGTAGAAAGGACGGTTATGAACAGCTATGGGTCCTTCCAGAA
CATGACCTCCGCCAAATGTATCTTCTTGAAGCAGAGGAGACGGCACATGT
TATCAGTATTGGAAATAACCACGAGTACGAATCCGAATCCTTCCGCTACG
TCTACTCCTCCCTCACCACTCCAAATCGGGATTACGAGTATGACATCAAC
TCCAAAGAAAGCACTTGCCTTAAGGAACAGAAAGTGCCCGGATACAGCAG
GGAGCTGTACAAAACAGAACGCCTGCAAGCTACAAGCGCAGACGGCACGA
CCGTACCAATCTCGTTGGTATACAATTCCAAAGCGCTGTCACAAGATGGG
CCAAACAAGTTGCATTTGTACGGATATGGTTCGTACGAGATATCCATTGA
TCCTTCCTTCTCTATGACAAGGCTTCCGATGCTTGATCGGGGTGTAATTT
ACGCAATTGCACATATACGAGGCGGAGGGGAATTTGGCAGAGAGTGGTAT
GAGGCGGCGAGGTTTGAAACCAAGGCAAAGACATTCGAAGATTTTTGTGC
GTGTGCAGAACATCTGATAGAGGTCGGGAAGACCACACCAAGGCTTTTGT
CAATCGAAGGGCGCTCTGCCGGGGGTCTTTTGATGGGTGCGGTGCTGAAC
ATGCGCCCAGAGCTTTTCAAGGCGGCCATTGCTGGTGTTCCTTTCGTGGA
CGTGTTGAACACCATGTCCGACCCGTCGATTCCTTTGACTACGGGAGAGT
GGCAAGAGTGGGGCAATCCGCATCAAAGAAAGTATTTTGATGCTATCAAA
CAGTATTGTCCGTATTCAAACGTGGGACCAAAGCCGTACCCGGCTGTGCT
TATCCTGGCCGGACTGTATGATCCGCGGGTGATGTATTCTGAACCGATGA
AATGGGCGGCCAAGTTGAGGAAGTACACAACGAGAAGTGACCCTATTCTG
CTGAAGGTAGATATGTCTAGCGGTCATTTTTCGGCGTCAAACAGGTATAG
TTTCCTGTCTGAAAAGGCGTTTGATATGGCATGGGTGCTCAAGCAGCTGG
ATGCTCCAGAGGATCCGACCTGCTCGTAG