Ggra6103.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6103.t1
Unique NameGgra6103.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:548811..549656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_04988T0
PFAMsNMT1,Phosphonate-bd
Max annot lvl33154|Opisthokonta
Evalue1.85e-63
EggNOG OGs2CMQY@1|root,2QRHZ@2759|Eukaryota,38UP7@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6103Ggra6103Gracilaria gracilis GNS1m malegenetig00000045_pilon 548811..549656 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6103.t1.stop1Ggra6103.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 548811..548813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6103.t1.CDS1Ggra6103.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 548811..549656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6103.t1.exon1Ggra6103.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 548811..549656 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6103.t1.start1Ggra6103.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 549654..549656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6103.t1Ggra6103.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 548811..549656 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6103.t1 ID=Ggra6103.t1|Name=Ggra6103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp
MNALKVGGVPEAFNDPFSFADFGSHGFTVSPSFVSCPGGSGSMIKGVVNG
ELDAAFALTDCIVAAIEKKYPVRIAAPLVKSPLTWAVIVNPNKVASVKDL
SEATWGISRMNSGSHVMVYTLAKEQNWTQEPRFKICGNFAGLRASLEEGG
IDAFLWEHYTTKPYVDKGIVKIIGGIPTPWSCFTVVVREDCERLEEVHRM
TDAFVEAGTKFINEHQNADGISQRHGMSRDDALAWMAGVNYADSGERKVN
SDMLEKTRQTLLEAGAIKEFGCAGGVASYHA*
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spliced messenger RNA

>Ggra6103.t1 ID=Ggra6103.t1|Name=Ggra6103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000045_pilon:548811..549656- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCTTTAAAAGTAGGGGGAGTTCCAGAAGCTTTTAACGACCCCTT
TTCGTTTGCTGATTTTGGCTCTCATGGATTCACCGTCAGCCCTAGTTTCG
TATCATGTCCCGGTGGGAGTGGGTCTATGATCAAAGGTGTGGTAAACGGA
GAACTAGACGCAGCTTTTGCATTAACAGACTGCATTGTTGCGGCCATTGA
AAAGAAGTACCCTGTGCGTATAGCAGCACCACTTGTCAAGAGCCCTCTCA
CCTGGGCAGTGATCGTTAACCCCAACAAAGTTGCTTCTGTGAAAGACCTT
TCGGAGGCTACATGGGGTATATCACGGATGAACAGCGGCAGCCATGTAAT
GGTCTATACTCTTGCGAAGGAGCAAAACTGGACGCAAGAGCCTAGGTTTA
AGATATGTGGGAATTTTGCAGGTCTACGAGCTTCGTTGGAAGAAGGGGGA
ATCGATGCTTTTTTGTGGGAGCATTATACAACTAAGCCATACGTAGACAA
GGGCATAGTGAAGATTATCGGCGGTATCCCAACTCCTTGGAGTTGTTTCA
CAGTGGTAGTTCGTGAAGACTGTGAGAGACTTGAGGAGGTCCACCGCATG
ACGGATGCCTTTGTTGAAGCAGGGACGAAATTTATTAATGAGCACCAGAA
CGCTGACGGGATATCGCAGCGGCACGGAATGTCGAGAGACGACGCATTGG
CTTGGATGGCAGGGGTGAATTATGCGGACAGCGGAGAGCGAAAGGTGAAC
AGCGACATGCTTGAGAAAACGAGGCAGACGCTGCTTGAAGCCGGAGCTAT
CAAGGAATTTGGGTGTGCTGGGGGAGTAGCATCGTATCATGCGTAA
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protein sequence of Ggra6103.t1

>Ggra6103.t1 ID=Ggra6103.t1|Name=Ggra6103.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MNALKVGGVPEAFNDPFSFADFGSHGFTVSPSFVSCPGGSGSMIKGVVNG
ELDAAFALTDCIVAAIEKKYPVRIAAPLVKSPLTWAVIVNPNKVASVKDL
SEATWGISRMNSGSHVMVYTLAKEQNWTQEPRFKICGNFAGLRASLEEGG
IDAFLWEHYTTKPYVDKGIVKIIGGIPTPWSCFTVVVREDCERLEEVHRM
TDAFVEAGTKFINEHQNADGISQRHGMSRDDALAWMAGVNYADSGERKVN
SDMLEKTRQTLLEAGAIKEFGCAGGVASYHA*
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mRNA from alignment at tig00000045_pilon:548811..549656-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6103.t1 ID=Ggra6103.t1|Name=Ggra6103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000045_pilon:548811..549656- (Gracilaria gracilis GNS1m male)
ATGAACGCTTTAAAAGTAGGGGGAGTTCCAGAAGCTTTTAACGACCCCTT
TTCGTTTGCTGATTTTGGCTCTCATGGATTCACCGTCAGCCCTAGTTTCG
TATCATGTCCCGGTGGGAGTGGGTCTATGATCAAAGGTGTGGTAAACGGA
GAACTAGACGCAGCTTTTGCATTAACAGACTGCATTGTTGCGGCCATTGA
AAAGAAGTACCCTGTGCGTATAGCAGCACCACTTGTCAAGAGCCCTCTCA
CCTGGGCAGTGATCGTTAACCCCAACAAAGTTGCTTCTGTGAAAGACCTT
TCGGAGGCTACATGGGGTATATCACGGATGAACAGCGGCAGCCATGTAAT
GGTCTATACTCTTGCGAAGGAGCAAAACTGGACGCAAGAGCCTAGGTTTA
AGATATGTGGGAATTTTGCAGGTCTACGAGCTTCGTTGGAAGAAGGGGGA
ATCGATGCTTTTTTGTGGGAGCATTATACAACTAAGCCATACGTAGACAA
GGGCATAGTGAAGATTATCGGCGGTATCCCAACTCCTTGGAGTTGTTTCA
CAGTGGTAGTTCGTGAAGACTGTGAGAGACTTGAGGAGGTCCACCGCATG
ACGGATGCCTTTGTTGAAGCAGGGACGAAATTTATTAATGAGCACCAGAA
CGCTGACGGGATATCGCAGCGGCACGGAATGTCGAGAGACGACGCATTGG
CTTGGATGGCAGGGGTGAATTATGCGGACAGCGGAGAGCGAAAGGTGAAC
AGCGACATGCTTGAGAAAACGAGGCAGACGCTGCTTGAAGCCGGAGCTAT
CAAGGAATTTGGGTGTGCTGGGGGAGTAGCATCGTATCATGCGTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:548811..549656-

>Ggra6103.t1 ID=Ggra6103.t1|Name=Ggra6103.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000045_pilon:548811..549656- (Gracilaria gracilis GNS1m male)
ATGAACGCTTTAAAAGTAGGGGGAGTTCCAGAAGCTTTTAACGACCCCTT
TTCGTTTGCTGATTTTGGCTCTCATGGATTCACCGTCAGCCCTAGTTTCG
TATCATGTCCCGGTGGGAGTGGGTCTATGATCAAAGGTGTGGTAAACGGA
GAACTAGACGCAGCTTTTGCATTAACAGACTGCATTGTTGCGGCCATTGA
AAAGAAGTACCCTGTGCGTATAGCAGCACCACTTGTCAAGAGCCCTCTCA
CCTGGGCAGTGATCGTTAACCCCAACAAAGTTGCTTCTGTGAAAGACCTT
TCGGAGGCTACATGGGGTATATCACGGATGAACAGCGGCAGCCATGTAAT
GGTCTATACTCTTGCGAAGGAGCAAAACTGGACGCAAGAGCCTAGGTTTA
AGATATGTGGGAATTTTGCAGGTCTACGAGCTTCGTTGGAAGAAGGGGGA
ATCGATGCTTTTTTGTGGGAGCATTATACAACTAAGCCATACGTAGACAA
GGGCATAGTGAAGATTATCGGCGGTATCCCAACTCCTTGGAGTTGTTTCA
CAGTGGTAGTTCGTGAAGACTGTGAGAGACTTGAGGAGGTCCACCGCATG
ACGGATGCCTTTGTTGAAGCAGGGACGAAATTTATTAATGAGCACCAGAA
CGCTGACGGGATATCGCAGCGGCACGGAATGTCGAGAGACGACGCATTGG
CTTGGATGGCAGGGGTGAATTATGCGGACAGCGGAGAGCGAAAGGTGAAC
AGCGACATGCTTGAGAAAACGAGGCAGACGCTGCTTGAAGCCGGAGCTAT
CAAGGAATTTGGGTGTGCTGGGGGAGTAGCATCGTATCATGCGTAA
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