Ggra6102.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6102.t1
Unique Name	Ggra6102.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	711

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:546022..548154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMG177CT
PFAMs	LETM1
Max annot lvl	2759\|Eukaryota
Evalue	8.8e-73
EggNOG OGs	KOG1043@1\|root,KOG1043@2759\|Eukaryota
Description	calcium export from the mitochondrion
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6102	Ggra6102	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 546022..548154 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6102.t1.start1	Ggra6102.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 546022..546024 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6102.t1.CDS1	Ggra6102.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 546022..548154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6102.t1.exon1	Ggra6102.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 546022..548154 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6102.t1.stop1	Ggra6102.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 548152..548154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6102.t1	Ggra6102.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 546022..548154 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:546022..548154+
coding sequence from alignment at tig00000045_pilon:546022..548154+

mRNA sequence

>Ggra6102.t1 ID=Ggra6102.t1|Name=Ggra6102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp
MTSAAVNESQFAMRSSLRRPRSTFVPLLAPPYRGTFGATCRISPRRRTIR
RLHSCAQAPQPPQPGRSTQPSQVVQPTAPTPPVDNREQQRDFSQVSSHVR
SLNTRLIVRLAEANIRLVLNLLESPDLDMDRVSDMSEAQATAHRVRKDLR
TIRRIAVEAPIERDAATLIAKLEQVLDDVDVALEQSQSQRRAYDVDAVTS
EDILDASIRPEEDTQSMADVDIDTESKSEEKEDIMRAVQRTVLESGQSLK
RRASTVGQNVQDALTNFVRDDGTVDVPALRLFLSSWLDNAGMTWKRLNGF
VSDSQSEQTLESSLLPPVAVLDVRDEEKEYHLREQIGDLEKQLFNSSKER
EAVLRREDQLGKLIRAKEIREMDDFVSSLRRTLAVRVLQLEMEKIFISMA
EEIDNCDRETMNEQRMMVVEFTELDDRLATLELFVEQQEPLLIEDGIVGE
LAGDVQYLKTRLGLDEPLYSSSTLSWPQVRQFIASSSKKTRAGIEFYYRG
VRLFIGDLRFALRLVRRAVTGYTPTPREIRTIRRTMKDLLTLIPFTIVLI
APLTPVGHVLIFSLLQRYWPEFFPSTFSERRQALMRKYENYEKSLRDENG
VNEDSEKAADSAESKGPLATLLKMLLFGMFVGDSNKVGKKDANAQAVNDV
KPKQEGGIDLDSNLNVQESVMKNGRPHVSLSDLSKAAPDNNRIAEKDRVS
IALDELHLAD*

spliced messenger RNA

>Ggra6102.t1 ID=Ggra6102.t1|Name=Ggra6102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00000045_pilon:546022..548154+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCGCTGCTGTAAACGAGAGCCAATTTGCGATGCGCAGCTCGCT
TCGTCGTCCTCGTTCCACTTTTGTACCGCTGCTCGCTCCTCCGTACAGAG
GCACATTTGGCGCCACCTGTCGGATTTCCCCGCGTCGTCGAACCATTCGC
CGTCTCCACAGCTGCGCCCAGGCTCCGCAACCGCCCCAGCCTGGACGTTC
CACGCAACCATCTCAAGTCGTTCAGCCCACCGCCCCTACTCCCCCTGTTG
ACAACAGAGAACAACAACGCGATTTCAGCCAAGTTAGCAGCCATGTACGC
TCACTCAATACGCGATTGATTGTTCGTTTGGCGGAGGCTAATATACGTCT
CGTCCTAAATCTTCTTGAGTCCCCTGATCTTGACATGGACAGGGTTTCAG
ACATGTCGGAAGCTCAGGCTACAGCGCATAGAGTGCGAAAGGATTTGCGC
ACAATCCGGCGGATAGCTGTGGAAGCTCCGATTGAACGTGATGCTGCCAC
GCTTATCGCCAAGCTAGAACAGGTTCTCGACGATGTGGATGTCGCTCTTG
AGCAAAGCCAATCCCAGCGACGCGCATACGATGTGGATGCTGTTACCTCT
GAGGACATTCTTGATGCTTCTATTCGTCCAGAGGAAGATACTCAATCCAT
GGCAGATGTTGACATCGACACTGAAAGCAAAAGCGAAGAAAAGGAAGACA
TTATGCGCGCTGTGCAGCGAACAGTTTTGGAAAGTGGACAGTCCCTCAAG
CGGCGTGCGAGCACAGTTGGACAGAATGTTCAAGACGCTCTTACAAATTT
TGTTCGCGACGATGGAACGGTTGACGTTCCGGCATTGCGGTTATTTCTTT
CAAGTTGGTTGGACAACGCAGGTATGACATGGAAGCGGTTAAACGGTTTT
GTATCCGATTCGCAATCTGAACAAACACTAGAGAGCTCCCTCCTACCCCC
CGTAGCGGTCTTGGATGTGAGAGACGAGGAGAAGGAGTATCACTTGCGGG
AACAAATCGGAGATCTTGAGAAACAGCTCTTCAATAGTAGCAAAGAACGC
GAAGCAGTTTTGCGCCGCGAAGACCAGCTTGGTAAACTTATTCGGGCGAA
GGAGATTCGTGAAATGGATGATTTTGTCAGCTCGCTTCGTCGAACTCTCG
CGGTGCGAGTATTGCAACTTGAGATGGAGAAGATATTTATTAGTATGGCA
GAAGAGATTGACAACTGCGACCGCGAGACAATGAACGAACAGCGTATGAT
GGTTGTGGAATTTACGGAGCTGGACGATCGTCTTGCCACTTTGGAATTGT
TCGTGGAACAACAAGAACCCCTTTTAATCGAAGATGGTATTGTTGGGGAG
TTGGCCGGAGACGTCCAATACCTGAAGACCCGACTTGGGCTCGACGAGCC
GTTGTATAGTTCATCAACCTTGAGCTGGCCTCAAGTGCGCCAGTTCATCG
CTTCATCTTCAAAGAAGACGCGAGCTGGAATAGAATTCTATTATCGAGGG
GTGCGACTATTTATTGGCGACTTGCGATTTGCTCTACGTCTGGTTCGAAG
AGCAGTGACGGGGTATACCCCAACTCCGCGAGAGATTCGCACTATACGGA
GGACTATGAAGGATCTTCTGACCCTTATCCCGTTCACGATTGTTTTGATT
GCTCCTCTGACACCAGTAGGGCATGTTCTAATTTTCTCTCTCCTTCAACG
ATATTGGCCTGAATTCTTCCCATCAACTTTCAGTGAGAGGCGACAGGCTT
TAATGCGTAAGTATGAGAACTATGAGAAGTCCCTTCGAGACGAGAACGGA
GTGAACGAGGACTCTGAGAAAGCTGCAGATTCAGCAGAGTCAAAAGGCCC
TCTTGCAACCCTTCTGAAAATGCTTCTGTTCGGAATGTTCGTAGGAGATT
CAAACAAAGTTGGAAAGAAGGATGCAAATGCCCAGGCGGTAAATGATGTG
AAACCAAAGCAGGAAGGAGGTATAGATTTGGATTCTAACTTGAATGTGCA
AGAGTCAGTCATGAAAAATGGTCGTCCTCATGTTTCCCTCAGTGATTTGT
CGAAAGCTGCCCCAGATAACAACCGAATAGCTGAGAAGGATAGAGTCTCA
ATCGCCCTGGATGAACTCCATCTTGCAGACTAA

protein sequence of Ggra6102.t1

>Ggra6102.t1 ID=Ggra6102.t1|Name=Ggra6102.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=711bp
MTSAAVNESQFAMRSSLRRPRSTFVPLLAPPYRGTFGATCRISPRRRTIR
RLHSCAQAPQPPQPGRSTQPSQVVQPTAPTPPVDNREQQRDFSQVSSHVR
SLNTRLIVRLAEANIRLVLNLLESPDLDMDRVSDMSEAQATAHRVRKDLR
TIRRIAVEAPIERDAATLIAKLEQVLDDVDVALEQSQSQRRAYDVDAVTS
EDILDASIRPEEDTQSMADVDIDTESKSEEKEDIMRAVQRTVLESGQSLK
RRASTVGQNVQDALTNFVRDDGTVDVPALRLFLSSWLDNAGMTWKRLNGF
VSDSQSEQTLESSLLPPVAVLDVRDEEKEYHLREQIGDLEKQLFNSSKER
EAVLRREDQLGKLIRAKEIREMDDFVSSLRRTLAVRVLQLEMEKIFISMA
EEIDNCDRETMNEQRMMVVEFTELDDRLATLELFVEQQEPLLIEDGIVGE
LAGDVQYLKTRLGLDEPLYSSSTLSWPQVRQFIASSSKKTRAGIEFYYRG
VRLFIGDLRFALRLVRRAVTGYTPTPREIRTIRRTMKDLLTLIPFTIVLI
APLTPVGHVLIFSLLQRYWPEFFPSTFSERRQALMRKYENYEKSLRDENG
VNEDSEKAADSAESKGPLATLLKMLLFGMFVGDSNKVGKKDANAQAVNDV
KPKQEGGIDLDSNLNVQESVMKNGRPHVSLSDLSKAAPDNNRIAEKDRVS
IALDELHLAD*

mRNA from alignment at tig00000045_pilon:546022..548154+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6102.t1 ID=Ggra6102.t1|Name=Ggra6102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00000045_pilon:546022..548154+ (Gracilaria gracilis GNS1m male)
ATGACCTCCGCTGCTGTAAACGAGAGCCAATTTGCGATGCGCAGCTCGCT
TCGTCGTCCTCGTTCCACTTTTGTACCGCTGCTCGCTCCTCCGTACAGAG
GCACATTTGGCGCCACCTGTCGGATTTCCCCGCGTCGTCGAACCATTCGC
CGTCTCCACAGCTGCGCCCAGGCTCCGCAACCGCCCCAGCCTGGACGTTC
CACGCAACCATCTCAAGTCGTTCAGCCCACCGCCCCTACTCCCCCTGTTG
ACAACAGAGAACAACAACGCGATTTCAGCCAAGTTAGCAGCCATGTACGC
TCACTCAATACGCGATTGATTGTTCGTTTGGCGGAGGCTAATATACGTCT
CGTCCTAAATCTTCTTGAGTCCCCTGATCTTGACATGGACAGGGTTTCAG
ACATGTCGGAAGCTCAGGCTACAGCGCATAGAGTGCGAAAGGATTTGCGC
ACAATCCGGCGGATAGCTGTGGAAGCTCCGATTGAACGTGATGCTGCCAC
GCTTATCGCCAAGCTAGAACAGGTTCTCGACGATGTGGATGTCGCTCTTG
AGCAAAGCCAATCCCAGCGACGCGCATACGATGTGGATGCTGTTACCTCT
GAGGACATTCTTGATGCTTCTATTCGTCCAGAGGAAGATACTCAATCCAT
GGCAGATGTTGACATCGACACTGAAAGCAAAAGCGAAGAAAAGGAAGACA
TTATGCGCGCTGTGCAGCGAACAGTTTTGGAAAGTGGACAGTCCCTCAAG
CGGCGTGCGAGCACAGTTGGACAGAATGTTCAAGACGCTCTTACAAATTT
TGTTCGCGACGATGGAACGGTTGACGTTCCGGCATTGCGGTTATTTCTTT
CAAGTTGGTTGGACAACGCAGGTATGACATGGAAGCGGTTAAACGGTTTT
GTATCCGATTCGCAATCTGAACAAACACTAGAGAGCTCCCTCCTACCCCC
CGTAGCGGTCTTGGATGTGAGAGACGAGGAGAAGGAGTATCACTTGCGGG
AACAAATCGGAGATCTTGAGAAACAGCTCTTCAATAGTAGCAAAGAACGC
GAAGCAGTTTTGCGCCGCGAAGACCAGCTTGGTAAACTTATTCGGGCGAA
GGAGATTCGTGAAATGGATGATTTTGTCAGCTCGCTTCGTCGAACTCTCG
CGGTGCGAGTATTGCAACTTGAGATGGAGAAGATATTTATTAGTATGGCA
GAAGAGATTGACAACTGCGACCGCGAGACAATGAACGAACAGCGTATGAT
GGTTGTGGAATTTACGGAGCTGGACGATCGTCTTGCCACTTTGGAATTGT
TCGTGGAACAACAAGAACCCCTTTTAATCGAAGATGGTATTGTTGGGGAG
TTGGCCGGAGACGTCCAATACCTGAAGACCCGACTTGGGCTCGACGAGCC
GTTGTATAGTTCATCAACCTTGAGCTGGCCTCAAGTGCGCCAGTTCATCG
CTTCATCTTCAAAGAAGACGCGAGCTGGAATAGAATTCTATTATCGAGGG
GTGCGACTATTTATTGGCGACTTGCGATTTGCTCTACGTCTGGTTCGAAG
AGCAGTGACGGGGTATACCCCAACTCCGCGAGAGATTCGCACTATACGGA
GGACTATGAAGGATCTTCTGACCCTTATCCCGTTCACGATTGTTTTGATT
GCTCCTCTGACACCAGTAGGGCATGTTCTAATTTTCTCTCTCCTTCAACG
ATATTGGCCTGAATTCTTCCCATCAACTTTCAGTGAGAGGCGACAGGCTT
TAATGCGTAAGTATGAGAACTATGAGAAGTCCCTTCGAGACGAGAACGGA
GTGAACGAGGACTCTGAGAAAGCTGCAGATTCAGCAGAGTCAAAAGGCCC
TCTTGCAACCCTTCTGAAAATGCTTCTGTTCGGAATGTTCGTAGGAGATT
CAAACAAAGTTGGAAAGAAGGATGCAAATGCCCAGGCGGTAAATGATGTG
AAACCAAAGCAGGAAGGAGGTATAGATTTGGATTCTAACTTGAATGTGCA
AGAGTCAGTCATGAAAAATGGTCGTCCTCATGTTTCCCTCAGTGATTTGT
CGAAAGCTGCCCCAGATAACAACCGAATAGCTGAGAAGGATAGAGTCTCA
ATCGCCCTGGATGAACTCCATCTTGCAGACTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:546022..548154+

>Ggra6102.t1 ID=Ggra6102.t1|Name=Ggra6102.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2133bp|location=Sequence derived from alignment at tig00000045_pilon:546022..548154+ (Gracilaria gracilis GNS1m male)
ATGACCTCCGCTGCTGTAAACGAGAGCCAATTTGCGATGCGCAGCTCGCT
TCGTCGTCCTCGTTCCACTTTTGTACCGCTGCTCGCTCCTCCGTACAGAG
GCACATTTGGCGCCACCTGTCGGATTTCCCCGCGTCGTCGAACCATTCGC
CGTCTCCACAGCTGCGCCCAGGCTCCGCAACCGCCCCAGCCTGGACGTTC
CACGCAACCATCTCAAGTCGTTCAGCCCACCGCCCCTACTCCCCCTGTTG
ACAACAGAGAACAACAACGCGATTTCAGCCAAGTTAGCAGCCATGTACGC
TCACTCAATACGCGATTGATTGTTCGTTTGGCGGAGGCTAATATACGTCT
CGTCCTAAATCTTCTTGAGTCCCCTGATCTTGACATGGACAGGGTTTCAG
ACATGTCGGAAGCTCAGGCTACAGCGCATAGAGTGCGAAAGGATTTGCGC
ACAATCCGGCGGATAGCTGTGGAAGCTCCGATTGAACGTGATGCTGCCAC
GCTTATCGCCAAGCTAGAACAGGTTCTCGACGATGTGGATGTCGCTCTTG
AGCAAAGCCAATCCCAGCGACGCGCATACGATGTGGATGCTGTTACCTCT
GAGGACATTCTTGATGCTTCTATTCGTCCAGAGGAAGATACTCAATCCAT
GGCAGATGTTGACATCGACACTGAAAGCAAAAGCGAAGAAAAGGAAGACA
TTATGCGCGCTGTGCAGCGAACAGTTTTGGAAAGTGGACAGTCCCTCAAG
CGGCGTGCGAGCACAGTTGGACAGAATGTTCAAGACGCTCTTACAAATTT
TGTTCGCGACGATGGAACGGTTGACGTTCCGGCATTGCGGTTATTTCTTT
CAAGTTGGTTGGACAACGCAGGTATGACATGGAAGCGGTTAAACGGTTTT
GTATCCGATTCGCAATCTGAACAAACACTAGAGAGCTCCCTCCTACCCCC
CGTAGCGGTCTTGGATGTGAGAGACGAGGAGAAGGAGTATCACTTGCGGG
AACAAATCGGAGATCTTGAGAAACAGCTCTTCAATAGTAGCAAAGAACGC
GAAGCAGTTTTGCGCCGCGAAGACCAGCTTGGTAAACTTATTCGGGCGAA
GGAGATTCGTGAAATGGATGATTTTGTCAGCTCGCTTCGTCGAACTCTCG
CGGTGCGAGTATTGCAACTTGAGATGGAGAAGATATTTATTAGTATGGCA
GAAGAGATTGACAACTGCGACCGCGAGACAATGAACGAACAGCGTATGAT
GGTTGTGGAATTTACGGAGCTGGACGATCGTCTTGCCACTTTGGAATTGT
TCGTGGAACAACAAGAACCCCTTTTAATCGAAGATGGTATTGTTGGGGAG
TTGGCCGGAGACGTCCAATACCTGAAGACCCGACTTGGGCTCGACGAGCC
GTTGTATAGTTCATCAACCTTGAGCTGGCCTCAAGTGCGCCAGTTCATCG
CTTCATCTTCAAAGAAGACGCGAGCTGGAATAGAATTCTATTATCGAGGG
GTGCGACTATTTATTGGCGACTTGCGATTTGCTCTACGTCTGGTTCGAAG
AGCAGTGACGGGGTATACCCCAACTCCGCGAGAGATTCGCACTATACGGA
GGACTATGAAGGATCTTCTGACCCTTATCCCGTTCACGATTGTTTTGATT
GCTCCTCTGACACCAGTAGGGCATGTTCTAATTTTCTCTCTCCTTCAACG
ATATTGGCCTGAATTCTTCCCATCAACTTTCAGTGAGAGGCGACAGGCTT
TAATGCGTAAGTATGAGAACTATGAGAAGTCCCTTCGAGACGAGAACGGA
GTGAACGAGGACTCTGAGAAAGCTGCAGATTCAGCAGAGTCAAAAGGCCC
TCTTGCAACCCTTCTGAAAATGCTTCTGTTCGGAATGTTCGTAGGAGATT
CAAACAAAGTTGGAAAGAAGGATGCAAATGCCCAGGCGGTAAATGATGTG
AAACCAAAGCAGGAAGGAGGTATAGATTTGGATTCTAACTTGAATGTGCA
AGAGTCAGTCATGAAAAATGGTCGTCCTCATGTTTCCCTCAGTGATTTGT
CGAAAGCTGCCCCAGATAACAACCGAATAGCTGAGAAGGATAGAGTCTCA
ATCGCCCTGGATGAACTCCATCTTGCAGACTAA