Ggra6099.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6099.t1
Unique Name	Ggra6099.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:541020..542753 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP169CT
PFAMs	NCA2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18158
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Evalue	1.08e-12
EggNOG OGs	28M9W@1\|root,2QQIS@2759\|Eukaryota
Description	Nuclear control of ATPase protein
COG category	S
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6099	Ggra6099	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 541020..542753 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6099.t1.stop1	Ggra6099.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 541020..541022 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6099.t1.CDS1	Ggra6099.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 541020..542753 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6099.t1.exon1	Ggra6099.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 541020..542753 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6099.t1.start1	Ggra6099.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 542751..542753 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6099.t1	Ggra6099.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 541020..542753 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:541020..542753-
coding sequence from alignment at tig00000045_pilon:541020..542753-

mRNA sequence

>Ggra6099.t1 ID=Ggra6099.t1|Name=Ggra6099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=578bp
MDLLPQLSVVLKKLLLPNTGFIKRHKPSVAFEINNSQSAQHLLQILSERT
DDIVADNQALAHLRLRSSQYLLEHIVSIVQRLESYALYYRTESATLRKSL
HGIVFRYSFSSSALSSAEYNDEIRNLIELIIHSVCQFIGLHMQTGHAIRI
ALREARQDDLARAIVTSCRQVSSFNHAISQAISAADLPQNLQEVVRTSIS
ATRIDISEQSHIAGQLGQFWNHNGSSSTKRFGAHDVRLTVQIIQRELSDI
RITLRRFSRLCERDVAKPYDIRRRPFRYGSLAIVTGASTSYLTRNAAFLG
GSGELEETVVHFGHVVRGFVDNNVIVPISRFYKQIFHTSTTASDEKSVSD
SRMILQDMLSEFTEKHLKHINEASDMAKAGDFKAVTKLILEQARHPFRNT
VIGSLPQAMLLQVQKLKCDVEELMLKSMQLLRAQELNLALVALAPSLLTI
ASIVQICSTVAFQIRGRNAGMIVSGGQTARFLLGDIHSAFLAIEAEEGAD
TRQTECILRHMKHIGVIHVKVVEVLNLIELRIITAPEKVIFRFTDDLELL
RSADEHINQRRVHVDRMLRCYSFLQTG*

spliced messenger RNA

>Ggra6099.t1 ID=Ggra6099.t1|Name=Ggra6099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000045_pilon:541020..542753- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTTCTACCTCAGCTTTCGGTTGTCCTGAAGAAGCTATTGCTCCC
AAATACTGGGTTCATCAAGCGACATAAACCTTCAGTTGCGTTCGAAATCA
ACAATTCCCAGTCTGCTCAACATCTGCTGCAAATTTTGTCAGAGCGAACC
GATGATATCGTGGCCGATAACCAAGCGTTGGCGCACCTACGCTTGCGAAG
CAGTCAATATCTTCTCGAGCACATTGTATCAATTGTTCAACGTCTAGAAT
CATACGCTCTCTACTATAGAACCGAGTCAGCAACACTTCGCAAATCGCTC
CATGGCATAGTTTTTCGCTATTCTTTCTCATCGTCCGCTCTGTCAAGCGC
GGAGTACAACGATGAGATCCGAAACCTTATCGAACTCATTATTCATTCAG
TCTGTCAGTTCATCGGCTTGCACATGCAAACAGGCCATGCCATTCGAATT
GCTCTGCGAGAAGCTCGCCAAGACGATCTTGCTCGGGCCATTGTGACGTC
GTGTCGACAAGTCAGTTCTTTCAACCATGCAATATCACAAGCCATCTCTG
CGGCAGATCTACCGCAGAATTTGCAAGAAGTCGTGAGAACGTCTATCTCT
GCCACTCGCATAGATATTTCAGAGCAATCGCATATTGCCGGTCAACTTGG
TCAGTTTTGGAATCATAATGGCTCCTCAAGTACTAAACGATTTGGAGCGC
ACGATGTTCGACTAACTGTTCAAATAATTCAGCGTGAACTGTCTGATATA
CGGATTACATTGCGACGCTTCAGCCGATTGTGTGAACGAGACGTGGCAAA
GCCGTATGATATTAGGAGACGTCCGTTTCGATATGGAAGCCTGGCTATCG
TCACAGGAGCATCAACAAGCTATTTGACACGCAACGCGGCGTTTCTCGGT
GGAAGCGGCGAACTAGAAGAAACCGTGGTACACTTTGGACATGTGGTTCG
CGGTTTCGTTGATAACAATGTTATTGTTCCGATCTCGCGCTTCTATAAGC
AGATTTTTCACACATCGACTACCGCATCAGACGAGAAGTCTGTCTCAGAC
TCACGTATGATTCTTCAAGACATGCTTTCCGAATTCACAGAAAAGCACTT
GAAACACATTAATGAGGCGAGTGATATGGCGAAGGCTGGGGACTTCAAGG
CTGTGACAAAGCTCATTCTCGAACAAGCGCGGCATCCTTTTAGGAACACC
GTTATCGGAAGTCTTCCACAGGCGATGCTCCTTCAAGTTCAGAAACTGAA
GTGCGATGTGGAAGAGTTGATGCTGAAAAGCATGCAGCTTCTTCGCGCAC
AGGAGCTTAACCTCGCACTAGTTGCACTAGCCCCATCTTTGCTCACAATA
GCTTCCATAGTTCAAATATGTTCCACAGTTGCGTTCCAGATACGGGGTAG
GAACGCGGGAATGATTGTATCTGGTGGTCAAACGGCACGCTTTCTTCTTG
GAGACATACATTCTGCTTTTCTCGCGATAGAAGCGGAGGAAGGAGCAGAT
ACACGCCAAACAGAGTGCATCTTGCGACATATGAAACACATTGGGGTTAT
TCACGTTAAAGTCGTTGAAGTACTGAACCTTATAGAGCTTCGGATTATCA
CAGCACCTGAGAAGGTCATTTTTCGTTTTACAGATGATCTTGAGTTGCTA
CGTTCGGCTGACGAGCATATTAATCAAAGAAGAGTACATGTGGATAGAAT
GCTTAGATGTTACTCATTTCTCCAAACGGGATAA

protein sequence of Ggra6099.t1

>Ggra6099.t1 ID=Ggra6099.t1|Name=Ggra6099.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=578bp
MDLLPQLSVVLKKLLLPNTGFIKRHKPSVAFEINNSQSAQHLLQILSERT
DDIVADNQALAHLRLRSSQYLLEHIVSIVQRLESYALYYRTESATLRKSL
HGIVFRYSFSSSALSSAEYNDEIRNLIELIIHSVCQFIGLHMQTGHAIRI
ALREARQDDLARAIVTSCRQVSSFNHAISQAISAADLPQNLQEVVRTSIS
ATRIDISEQSHIAGQLGQFWNHNGSSSTKRFGAHDVRLTVQIIQRELSDI
RITLRRFSRLCERDVAKPYDIRRRPFRYGSLAIVTGASTSYLTRNAAFLG
GSGELEETVVHFGHVVRGFVDNNVIVPISRFYKQIFHTSTTASDEKSVSD
SRMILQDMLSEFTEKHLKHINEASDMAKAGDFKAVTKLILEQARHPFRNT
VIGSLPQAMLLQVQKLKCDVEELMLKSMQLLRAQELNLALVALAPSLLTI
ASIVQICSTVAFQIRGRNAGMIVSGGQTARFLLGDIHSAFLAIEAEEGAD
TRQTECILRHMKHIGVIHVKVVEVLNLIELRIITAPEKVIFRFTDDLELL
RSADEHINQRRVHVDRMLRCYSFLQTG*

mRNA from alignment at tig00000045_pilon:541020..542753-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6099.t1 ID=Ggra6099.t1|Name=Ggra6099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000045_pilon:541020..542753- (Gracilaria gracilis GNS1m male)
ATGGACCTTCTACCTCAGCTTTCGGTTGTCCTGAAGAAGCTATTGCTCCC
AAATACTGGGTTCATCAAGCGACATAAACCTTCAGTTGCGTTCGAAATCA
ACAATTCCCAGTCTGCTCAACATCTGCTGCAAATTTTGTCAGAGCGAACC
GATGATATCGTGGCCGATAACCAAGCGTTGGCGCACCTACGCTTGCGAAG
CAGTCAATATCTTCTCGAGCACATTGTATCAATTGTTCAACGTCTAGAAT
CATACGCTCTCTACTATAGAACCGAGTCAGCAACACTTCGCAAATCGCTC
CATGGCATAGTTTTTCGCTATTCTTTCTCATCGTCCGCTCTGTCAAGCGC
GGAGTACAACGATGAGATCCGAAACCTTATCGAACTCATTATTCATTCAG
TCTGTCAGTTCATCGGCTTGCACATGCAAACAGGCCATGCCATTCGAATT
GCTCTGCGAGAAGCTCGCCAAGACGATCTTGCTCGGGCCATTGTGACGTC
GTGTCGACAAGTCAGTTCTTTCAACCATGCAATATCACAAGCCATCTCTG
CGGCAGATCTACCGCAGAATTTGCAAGAAGTCGTGAGAACGTCTATCTCT
GCCACTCGCATAGATATTTCAGAGCAATCGCATATTGCCGGTCAACTTGG
TCAGTTTTGGAATCATAATGGCTCCTCAAGTACTAAACGATTTGGAGCGC
ACGATGTTCGACTAACTGTTCAAATAATTCAGCGTGAACTGTCTGATATA
CGGATTACATTGCGACGCTTCAGCCGATTGTGTGAACGAGACGTGGCAAA
GCCGTATGATATTAGGAGACGTCCGTTTCGATATGGAAGCCTGGCTATCG
TCACAGGAGCATCAACAAGCTATTTGACACGCAACGCGGCGTTTCTCGGT
GGAAGCGGCGAACTAGAAGAAACCGTGGTACACTTTGGACATGTGGTTCG
CGGTTTCGTTGATAACAATGTTATTGTTCCGATCTCGCGCTTCTATAAGC
AGATTTTTCACACATCGACTACCGCATCAGACGAGAAGTCTGTCTCAGAC
TCACGTATGATTCTTCAAGACATGCTTTCCGAATTCACAGAAAAGCACTT
GAAACACATTAATGAGGCGAGTGATATGGCGAAGGCTGGGGACTTCAAGG
CTGTGACAAAGCTCATTCTCGAACAAGCGCGGCATCCTTTTAGGAACACC
GTTATCGGAAGTCTTCCACAGGCGATGCTCCTTCAAGTTCAGAAACTGAA
GTGCGATGTGGAAGAGTTGATGCTGAAAAGCATGCAGCTTCTTCGCGCAC
AGGAGCTTAACCTCGCACTAGTTGCACTAGCCCCATCTTTGCTCACAATA
GCTTCCATAGTTCAAATATGTTCCACAGTTGCGTTCCAGATACGGGGTAG
GAACGCGGGAATGATTGTATCTGGTGGTCAAACGGCACGCTTTCTTCTTG
GAGACATACATTCTGCTTTTCTCGCGATAGAAGCGGAGGAAGGAGCAGAT
ACACGCCAAACAGAGTGCATCTTGCGACATATGAAACACATTGGGGTTAT
TCACGTTAAAGTCGTTGAAGTACTGAACCTTATAGAGCTTCGGATTATCA
CAGCACCTGAGAAGGTCATTTTTCGTTTTACAGATGATCTTGAGTTGCTA
CGTTCGGCTGACGAGCATATTAATCAAAGAAGAGTACATGTGGATAGAAT
GCTTAGATGTTACTCATTTCTCCAAACGGGATAA

Coding sequence (CDS) from alignment at tig00000045_pilon:541020..542753-

>Ggra6099.t1 ID=Ggra6099.t1|Name=Ggra6099.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00000045_pilon:541020..542753- (Gracilaria gracilis GNS1m male)
ATGGACCTTCTACCTCAGCTTTCGGTTGTCCTGAAGAAGCTATTGCTCCC
AAATACTGGGTTCATCAAGCGACATAAACCTTCAGTTGCGTTCGAAATCA
ACAATTCCCAGTCTGCTCAACATCTGCTGCAAATTTTGTCAGAGCGAACC
GATGATATCGTGGCCGATAACCAAGCGTTGGCGCACCTACGCTTGCGAAG
CAGTCAATATCTTCTCGAGCACATTGTATCAATTGTTCAACGTCTAGAAT
CATACGCTCTCTACTATAGAACCGAGTCAGCAACACTTCGCAAATCGCTC
CATGGCATAGTTTTTCGCTATTCTTTCTCATCGTCCGCTCTGTCAAGCGC
GGAGTACAACGATGAGATCCGAAACCTTATCGAACTCATTATTCATTCAG
TCTGTCAGTTCATCGGCTTGCACATGCAAACAGGCCATGCCATTCGAATT
GCTCTGCGAGAAGCTCGCCAAGACGATCTTGCTCGGGCCATTGTGACGTC
GTGTCGACAAGTCAGTTCTTTCAACCATGCAATATCACAAGCCATCTCTG
CGGCAGATCTACCGCAGAATTTGCAAGAAGTCGTGAGAACGTCTATCTCT
GCCACTCGCATAGATATTTCAGAGCAATCGCATATTGCCGGTCAACTTGG
TCAGTTTTGGAATCATAATGGCTCCTCAAGTACTAAACGATTTGGAGCGC
ACGATGTTCGACTAACTGTTCAAATAATTCAGCGTGAACTGTCTGATATA
CGGATTACATTGCGACGCTTCAGCCGATTGTGTGAACGAGACGTGGCAAA
GCCGTATGATATTAGGAGACGTCCGTTTCGATATGGAAGCCTGGCTATCG
TCACAGGAGCATCAACAAGCTATTTGACACGCAACGCGGCGTTTCTCGGT
GGAAGCGGCGAACTAGAAGAAACCGTGGTACACTTTGGACATGTGGTTCG
CGGTTTCGTTGATAACAATGTTATTGTTCCGATCTCGCGCTTCTATAAGC
AGATTTTTCACACATCGACTACCGCATCAGACGAGAAGTCTGTCTCAGAC
TCACGTATGATTCTTCAAGACATGCTTTCCGAATTCACAGAAAAGCACTT
GAAACACATTAATGAGGCGAGTGATATGGCGAAGGCTGGGGACTTCAAGG
CTGTGACAAAGCTCATTCTCGAACAAGCGCGGCATCCTTTTAGGAACACC
GTTATCGGAAGTCTTCCACAGGCGATGCTCCTTCAAGTTCAGAAACTGAA
GTGCGATGTGGAAGAGTTGATGCTGAAAAGCATGCAGCTTCTTCGCGCAC
AGGAGCTTAACCTCGCACTAGTTGCACTAGCCCCATCTTTGCTCACAATA
GCTTCCATAGTTCAAATATGTTCCACAGTTGCGTTCCAGATACGGGGTAG
GAACGCGGGAATGATTGTATCTGGTGGTCAAACGGCACGCTTTCTTCTTG
GAGACATACATTCTGCTTTTCTCGCGATAGAAGCGGAGGAAGGAGCAGAT
ACACGCCAAACAGAGTGCATCTTGCGACATATGAAACACATTGGGGTTAT
TCACGTTAAAGTCGTTGAAGTACTGAACCTTATAGAGCTTCGGATTATCA
CAGCACCTGAGAAGGTCATTTTTCGTTTTACAGATGATCTTGAGTTGCTA
CGTTCGGCTGACGAGCATATTAATCAAAGAAGAGTACATGTGGATAGAAT
GCTTAGATGTTACTCATTTCTCCAAACGGGATAA