Ggra6091.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6091.t1
Unique Name	Ggra6091.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	584

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:522915..524666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8083.ENSXMAP00000009299
PFAMs	DNA_photolyase,FAD_binding_7
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01669
GOs	GO:0000166,GO:0000719,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0033554,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901265,GO:1901360,GO:1901363
Evalue	3.41e-128
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota,38DIT@33154\|Opisthokonta,3BB38@33208\|Metazoa,3D10Z@33213\|Bilateria,489TJ@7711\|Chordata,497HE@7742\|Vertebrata,4A0TV@7898\|Actinopterygii
EC	4.1.99.3
Description	Cryptochrome
COG category	LT
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6091	Ggra6091	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 522915..524666 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6091.t1.start1	Ggra6091.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 522915..522917 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6091.t1.CDS1	Ggra6091.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 522915..524666 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6091.t1.exon1	Ggra6091.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 522915..524666 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6091.t1.stop1	Ggra6091.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 524664..524666 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6091.t1	Ggra6091.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 522915..524666 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:522915..524666+
coding sequence from alignment at tig00000045_pilon:522915..524666+

mRNA sequence

>Ggra6091.t1 ID=Ggra6091.t1|Name=Ggra6091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=584bp
MNRGGFERGQGRGQGAYRAPGKGRRRKAPKVRASIDPFSGPKVLNREVPK
CLPPDAVAVLWLRNDLRVRDNEALVLANTADVLVPVYVFDTSKFGISNAS
PWGFQRTGPFQTVFMIESVKDMQQALRKKGNDMIVRQGSPVEEVIDVVKS
LAQADLGPVHVVAHKESTWEETKDEDAVEEGLKKWSEETGTEVVMHWVWG
STMHHVDDVPFNPGGPALPKTFTAYRRLVEGKQVPVRKEIPAPERLKLFP
LHLRLRKDPFPSLRQDLQVEGLCDPLDYAFPHPLGVINFVGGESKGLERM
NDYLWNTGFVEDYKITRNESGKQNSSSKFSAWLSLGCVSPRTLYWEIKEY
EERKVANESTYWMIFELMTRDYFRWVSTSVGTKLFALNGYTGRGSDETSI
FPIVTASVKPYHRERLQKWIEGKTGAPFVDASMRELALTGFMSNRGRQNV
ASFLIHDLEFPDWRAGAEYFESILIDHDVSSNWGNWAYLAGVGSDPRGGR
RFNVIKQSMDYDPNGWFIQRWCHELVDIPPPMIHEPHTLSPEALKDIGII
KGETYPNPIVPLPKAPAKKESKTAQDTEAKVQR*

spliced messenger RNA

>Ggra6091.t1 ID=Ggra6091.t1|Name=Ggra6091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000045_pilon:522915..524666+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGAGGCGGGTTTGAAAGAGGCCAGGGTCGAGGCCAGGGTGCATA
TCGGGCGCCAGGCAAAGGCAGAAGACGTAAAGCACCTAAAGTTCGAGCGT
CTATTGACCCGTTCTCTGGTCCAAAAGTTTTGAATCGTGAAGTGCCTAAA
TGTCTACCGCCTGACGCTGTTGCTGTTCTATGGCTTCGCAACGATCTCCG
TGTTCGTGACAATGAAGCCTTGGTACTAGCAAATACTGCAGACGTACTCG
TACCGGTTTACGTTTTTGACACATCAAAGTTTGGGATAAGCAATGCTTCG
CCTTGGGGCTTTCAAAGAACTGGTCCTTTTCAAACGGTTTTTATGATAGA
ATCCGTGAAAGACATGCAACAGGCCTTGCGGAAGAAGGGCAATGATATGA
TTGTTCGTCAAGGATCTCCAGTCGAAGAAGTCATCGACGTAGTCAAGTCA
CTGGCACAGGCTGATCTTGGTCCTGTCCATGTCGTTGCCCATAAAGAATC
AACTTGGGAAGAGACCAAAGATGAAGATGCTGTCGAAGAAGGTCTGAAAA
AGTGGTCTGAAGAAACTGGAACCGAAGTGGTAATGCATTGGGTGTGGGGA
TCTACGATGCATCATGTAGATGATGTGCCTTTTAATCCAGGTGGCCCAGC
TTTGCCAAAAACCTTTACTGCTTACCGCCGACTAGTTGAAGGGAAGCAAG
TTCCCGTCCGCAAAGAAATCCCAGCTCCTGAACGTTTGAAATTGTTTCCA
CTGCATTTACGACTACGCAAGGACCCGTTTCCTTCCTTGCGACAAGACCT
ACAGGTAGAGGGTCTTTGTGATCCACTGGATTACGCTTTCCCACACCCGT
TAGGTGTGATAAACTTTGTTGGTGGTGAGTCAAAGGGCCTCGAGAGAATG
AATGACTACCTATGGAACACCGGTTTTGTGGAGGACTACAAAATTACTCG
CAATGAAAGCGGAAAGCAAAACTCGTCCTCCAAATTCTCCGCATGGTTAT
CACTAGGATGCGTTTCTCCTCGAACTTTGTATTGGGAAATTAAGGAGTAT
GAAGAAAGGAAGGTGGCAAACGAATCTACTTACTGGATGATCTTCGAACT
GATGACTCGGGACTATTTTCGGTGGGTGTCCACGTCTGTCGGCACTAAAT
TGTTTGCTTTGAACGGTTATACAGGACGAGGCTCAGATGAAACGAGCATA
TTTCCTATTGTTACTGCCTCTGTGAAACCTTATCATCGCGAAAGGTTACA
GAAATGGATTGAAGGAAAGACTGGCGCCCCTTTCGTTGATGCAAGCATGC
GCGAACTTGCCTTAACTGGGTTCATGAGCAATCGTGGGAGACAAAACGTA
GCTTCTTTTCTAATTCACGATCTTGAGTTTCCAGACTGGAGAGCGGGAGC
TGAATATTTTGAAAGCATTCTTATAGATCACGACGTGTCTTCGAACTGGG
GCAACTGGGCTTATCTGGCTGGGGTCGGCAGTGATCCTCGTGGAGGTCGG
AGGTTTAACGTTATCAAGCAAAGTATGGACTACGACCCAAATGGGTGGTT
CATTCAACGATGGTGTCATGAACTTGTCGACATACCCCCACCGATGATTC
ATGAACCACATACATTGTCTCCTGAGGCTCTCAAGGACATTGGTATCATC
AAAGGAGAAACTTATCCCAATCCAATTGTTCCCCTCCCCAAGGCGCCTGC
CAAAAAGGAAAGTAAAACTGCGCAAGACACTGAAGCAAAAGTACAAAGAT
GA

protein sequence of Ggra6091.t1

>Ggra6091.t1 ID=Ggra6091.t1|Name=Ggra6091.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=584bp
MNRGGFERGQGRGQGAYRAPGKGRRRKAPKVRASIDPFSGPKVLNREVPK
CLPPDAVAVLWLRNDLRVRDNEALVLANTADVLVPVYVFDTSKFGISNAS
PWGFQRTGPFQTVFMIESVKDMQQALRKKGNDMIVRQGSPVEEVIDVVKS
LAQADLGPVHVVAHKESTWEETKDEDAVEEGLKKWSEETGTEVVMHWVWG
STMHHVDDVPFNPGGPALPKTFTAYRRLVEGKQVPVRKEIPAPERLKLFP
LHLRLRKDPFPSLRQDLQVEGLCDPLDYAFPHPLGVINFVGGESKGLERM
NDYLWNTGFVEDYKITRNESGKQNSSSKFSAWLSLGCVSPRTLYWEIKEY
EERKVANESTYWMIFELMTRDYFRWVSTSVGTKLFALNGYTGRGSDETSI
FPIVTASVKPYHRERLQKWIEGKTGAPFVDASMRELALTGFMSNRGRQNV
ASFLIHDLEFPDWRAGAEYFESILIDHDVSSNWGNWAYLAGVGSDPRGGR
RFNVIKQSMDYDPNGWFIQRWCHELVDIPPPMIHEPHTLSPEALKDIGII
KGETYPNPIVPLPKAPAKKESKTAQDTEAKVQR*

mRNA from alignment at tig00000045_pilon:522915..524666+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6091.t1 ID=Ggra6091.t1|Name=Ggra6091.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000045_pilon:522915..524666+ (Gracilaria gracilis GNS1m male)
ATGAATCGAGGCGGGTTTGAAAGAGGCCAGGGTCGAGGCCAGGGTGCATA
TCGGGCGCCAGGCAAAGGCAGAAGACGTAAAGCACCTAAAGTTCGAGCGT
CTATTGACCCGTTCTCTGGTCCAAAAGTTTTGAATCGTGAAGTGCCTAAA
TGTCTACCGCCTGACGCTGTTGCTGTTCTATGGCTTCGCAACGATCTCCG
TGTTCGTGACAATGAAGCCTTGGTACTAGCAAATACTGCAGACGTACTCG
TACCGGTTTACGTTTTTGACACATCAAAGTTTGGGATAAGCAATGCTTCG
CCTTGGGGCTTTCAAAGAACTGGTCCTTTTCAAACGGTTTTTATGATAGA
ATCCGTGAAAGACATGCAACAGGCCTTGCGGAAGAAGGGCAATGATATGA
TTGTTCGTCAAGGATCTCCAGTCGAAGAAGTCATCGACGTAGTCAAGTCA
CTGGCACAGGCTGATCTTGGTCCTGTCCATGTCGTTGCCCATAAAGAATC
AACTTGGGAAGAGACCAAAGATGAAGATGCTGTCGAAGAAGGTCTGAAAA
AGTGGTCTGAAGAAACTGGAACCGAAGTGGTAATGCATTGGGTGTGGGGA
TCTACGATGCATCATGTAGATGATGTGCCTTTTAATCCAGGTGGCCCAGC
TTTGCCAAAAACCTTTACTGCTTACCGCCGACTAGTTGAAGGGAAGCAAG
TTCCCGTCCGCAAAGAAATCCCAGCTCCTGAACGTTTGAAATTGTTTCCA
CTGCATTTACGACTACGCAAGGACCCGTTTCCTTCCTTGCGACAAGACCT
ACAGGTAGAGGGTCTTTGTGATCCACTGGATTACGCTTTCCCACACCCGT
TAGGTGTGATAAACTTTGTTGGTGGTGAGTCAAAGGGCCTCGAGAGAATG
AATGACTACCTATGGAACACCGGTTTTGTGGAGGACTACAAAATTACTCG
CAATGAAAGCGGAAAGCAAAACTCGTCCTCCAAATTCTCCGCATGGTTAT
CACTAGGATGCGTTTCTCCTCGAACTTTGTATTGGGAAATTAAGGAGTAT
GAAGAAAGGAAGGTGGCAAACGAATCTACTTACTGGATGATCTTCGAACT
GATGACTCGGGACTATTTTCGGTGGGTGTCCACGTCTGTCGGCACTAAAT
TGTTTGCTTTGAACGGTTATACAGGACGAGGCTCAGATGAAACGAGCATA
TTTCCTATTGTTACTGCCTCTGTGAAACCTTATCATCGCGAAAGGTTACA
GAAATGGATTGAAGGAAAGACTGGCGCCCCTTTCGTTGATGCAAGCATGC
GCGAACTTGCCTTAACTGGGTTCATGAGCAATCGTGGGAGACAAAACGTA
GCTTCTTTTCTAATTCACGATCTTGAGTTTCCAGACTGGAGAGCGGGAGC
TGAATATTTTGAAAGCATTCTTATAGATCACGACGTGTCTTCGAACTGGG
GCAACTGGGCTTATCTGGCTGGGGTCGGCAGTGATCCTCGTGGAGGTCGG
AGGTTTAACGTTATCAAGCAAAGTATGGACTACGACCCAAATGGGTGGTT
CATTCAACGATGGTGTCATGAACTTGTCGACATACCCCCACCGATGATTC
ATGAACCACATACATTGTCTCCTGAGGCTCTCAAGGACATTGGTATCATC
AAAGGAGAAACTTATCCCAATCCAATTGTTCCCCTCCCCAAGGCGCCTGC
CAAAAAGGAAAGTAAAACTGCGCAAGACACTGAAGCAAAAGTACAAAGAT
GA

Coding sequence (CDS) from alignment at tig00000045_pilon:522915..524666+

>Ggra6091.t1 ID=Ggra6091.t1|Name=Ggra6091.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1752bp|location=Sequence derived from alignment at tig00000045_pilon:522915..524666+ (Gracilaria gracilis GNS1m male)
ATGAATCGAGGCGGGTTTGAAAGAGGCCAGGGTCGAGGCCAGGGTGCATA
TCGGGCGCCAGGCAAAGGCAGAAGACGTAAAGCACCTAAAGTTCGAGCGT
CTATTGACCCGTTCTCTGGTCCAAAAGTTTTGAATCGTGAAGTGCCTAAA
TGTCTACCGCCTGACGCTGTTGCTGTTCTATGGCTTCGCAACGATCTCCG
TGTTCGTGACAATGAAGCCTTGGTACTAGCAAATACTGCAGACGTACTCG
TACCGGTTTACGTTTTTGACACATCAAAGTTTGGGATAAGCAATGCTTCG
CCTTGGGGCTTTCAAAGAACTGGTCCTTTTCAAACGGTTTTTATGATAGA
ATCCGTGAAAGACATGCAACAGGCCTTGCGGAAGAAGGGCAATGATATGA
TTGTTCGTCAAGGATCTCCAGTCGAAGAAGTCATCGACGTAGTCAAGTCA
CTGGCACAGGCTGATCTTGGTCCTGTCCATGTCGTTGCCCATAAAGAATC
AACTTGGGAAGAGACCAAAGATGAAGATGCTGTCGAAGAAGGTCTGAAAA
AGTGGTCTGAAGAAACTGGAACCGAAGTGGTAATGCATTGGGTGTGGGGA
TCTACGATGCATCATGTAGATGATGTGCCTTTTAATCCAGGTGGCCCAGC
TTTGCCAAAAACCTTTACTGCTTACCGCCGACTAGTTGAAGGGAAGCAAG
TTCCCGTCCGCAAAGAAATCCCAGCTCCTGAACGTTTGAAATTGTTTCCA
CTGCATTTACGACTACGCAAGGACCCGTTTCCTTCCTTGCGACAAGACCT
ACAGGTAGAGGGTCTTTGTGATCCACTGGATTACGCTTTCCCACACCCGT
TAGGTGTGATAAACTTTGTTGGTGGTGAGTCAAAGGGCCTCGAGAGAATG
AATGACTACCTATGGAACACCGGTTTTGTGGAGGACTACAAAATTACTCG
CAATGAAAGCGGAAAGCAAAACTCGTCCTCCAAATTCTCCGCATGGTTAT
CACTAGGATGCGTTTCTCCTCGAACTTTGTATTGGGAAATTAAGGAGTAT
GAAGAAAGGAAGGTGGCAAACGAATCTACTTACTGGATGATCTTCGAACT
GATGACTCGGGACTATTTTCGGTGGGTGTCCACGTCTGTCGGCACTAAAT
TGTTTGCTTTGAACGGTTATACAGGACGAGGCTCAGATGAAACGAGCATA
TTTCCTATTGTTACTGCCTCTGTGAAACCTTATCATCGCGAAAGGTTACA
GAAATGGATTGAAGGAAAGACTGGCGCCCCTTTCGTTGATGCAAGCATGC
GCGAACTTGCCTTAACTGGGTTCATGAGCAATCGTGGGAGACAAAACGTA
GCTTCTTTTCTAATTCACGATCTTGAGTTTCCAGACTGGAGAGCGGGAGC
TGAATATTTTGAAAGCATTCTTATAGATCACGACGTGTCTTCGAACTGGG
GCAACTGGGCTTATCTGGCTGGGGTCGGCAGTGATCCTCGTGGAGGTCGG
AGGTTTAACGTTATCAAGCAAAGTATGGACTACGACCCAAATGGGTGGTT
CATTCAACGATGGTGTCATGAACTTGTCGACATACCCCCACCGATGATTC
ATGAACCACATACATTGTCTCCTGAGGCTCTCAAGGACATTGGTATCATC
AAAGGAGAAACTTATCCCAATCCAATTGTTCCCCTCCCCAAGGCGCCTGC
CAAAAAGGAAAGTAAAACTGCGCAAGACACTGAAGCAAAAGTACAAAGAT
GA