Ggra609.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra609.t1
Unique NameGgra609.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length575
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:139839..141563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706090.1
Preferred nameCCT4
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K09496,ko:K09500
GOsGO:0000003,GO:0000166,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0007275,GO:0007338,GO:0007339,GO:0008037,GO:0008144,GO:0008150,GO:0009566,GO:0009653,GO:0009791,GO:0009886,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010035,GO:0010038,GO:0010171,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0017076,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0035036,GO:0035639,GO:0036094,GO:0040032,GO:0042221,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046686,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0060341,GO:0061077,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901265,GO:1901363,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue3.1e-233
EggNOG OGsCOG0459@1|root,KOG0358@2759|Eukaryota
Descriptionunfolded protein binding
COG categoryO
BRITEko00000,ko03036,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra609Ggra609Gracilaria gracilis GNS1m malegenetig00000203_pilon 139839..141563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra609.t1.stop1Ggra609.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 139839..139841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra609.t1.CDS1Ggra609.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 139839..141563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra609.t1.exon1Ggra609.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 139839..141563 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra609.t1.start1Ggra609.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 141561..141563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra609.t1Ggra609.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 139839..141563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra609.t1 ID=Ggra609.t1|Name=Ggra609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=575bp
MVAVQVSQNGAMTSSAPTGASGAGANMSTTTAISEKAKDVRRNNITAAKA
VADAIRTSLGPRGMDKMVTQEDGSVLITNDGATILEQMRVEHPAAKMLVQ
LSRSQDVVAGDGTTSVVVICGALLSAALELLANGIHPSAISDAFQLALVK
SMEIVNNMAVPVNLDDRGALIQAAKTSLNSKVVSQYSNLLAPIAVDAVLT
VKKAPQSNGGARVNGSPQHESIVHGVSSTSATSFVDLKHIRTVKKLGGTI
DDSELVDGIILHQHAARAGSNSVTKVQSAKVALIQFCLSPPKTDVENSVV
VQDYTAMDRILREERQYILGLCKKIKAAGCNVLLIQKSILRDATTDLSLH
FLGKMKIMVVTDIERDEVEFLSKSLGCVPIAGIETFTADKLAKVDLVEEV
SLGSEKLVRMSGIAKPTKETVSILVRGSNHLVLDEAERSLHDALCVVRSI
VHKQYLIPGGGAPETEVSVLLSKAAKATTGMEAYCIEAYAEALNVVPFTL
AENAGLQPVEIVTELRRRHAAGESGAGINVSKGAVTNIKDEDVVMPLLVF
SSALSLATECVRQLLKIDDIVMVR*
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spliced messenger RNA

>Ggra609.t1 ID=Ggra609.t1|Name=Ggra609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000203_pilon:139839..141563- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGCAGTACAAGTCTCGCAGAACGGGGCTATGACTTCCTCGGCTCC
GACGGGCGCGTCTGGTGCTGGCGCTAACATGTCTACCACCACCGCTATTT
CTGAAAAGGCCAAGGATGTGCGTCGGAACAATATCACCGCGGCAAAGGCT
GTGGCTGATGCGATTCGCACGTCGCTGGGCCCGCGCGGGATGGATAAGAT
GGTCACGCAGGAGGATGGATCAGTGCTGATTACCAATGATGGCGCTACTA
TCCTGGAGCAGATGAGGGTTGAACATCCGGCTGCTAAAATGCTTGTTCAG
TTGTCCAGATCTCAGGATGTTGTTGCTGGTGATGGTACCACTTCCGTTGT
TGTTATTTGCGGTGCTTTGCTCAGCGCTGCCTTGGAGCTGCTGGCTAATG
GCATTCACCCTTCGGCTATCAGTGATGCTTTTCAGCTTGCGTTGGTCAAG
TCTATGGAGATTGTCAATAATATGGCTGTTCCGGTTAATCTTGACGATAG
AGGCGCTCTTATTCAAGCTGCCAAGACCAGTTTAAACTCCAAGGTTGTCA
GTCAGTATTCAAATTTATTGGCTCCGATTGCTGTTGACGCAGTGCTTACG
GTCAAGAAAGCTCCGCAATCTAATGGAGGTGCTAGAGTGAATGGCAGCCC
TCAACATGAATCGATTGTACATGGAGTTTCTTCCACTTCTGCCACTTCTT
TTGTCGATTTGAAACATATTCGTACTGTGAAGAAGCTTGGCGGTACAATC
GATGATTCTGAGCTTGTCGATGGAATTATTCTTCACCAACACGCTGCAAG
GGCGGGATCCAACTCCGTTACAAAAGTACAAAGCGCAAAAGTTGCGCTCA
TTCAATTCTGCCTCAGCCCTCCGAAGACAGATGTTGAAAACTCAGTCGTG
GTACAGGATTACACCGCTATGGATCGCATTCTTCGCGAGGAACGTCAATA
TATTCTTGGTTTGTGTAAGAAGATCAAGGCAGCTGGATGTAATGTGTTGT
TAATTCAAAAGAGCATTTTGAGAGATGCTACTACGGATCTAAGTCTTCAT
TTCTTGGGCAAGATGAAGATTATGGTTGTAACAGATATCGAGAGAGATGA
AGTCGAATTCTTGTCAAAGAGTCTTGGTTGCGTTCCAATTGCGGGTATTG
AGACTTTCACAGCCGATAAGTTGGCAAAGGTTGATCTCGTCGAAGAGGTA
TCTCTCGGATCAGAAAAACTAGTTCGCATGTCTGGTATTGCGAAACCTAC
AAAGGAAACAGTTTCAATTCTGGTACGAGGGTCGAATCATCTGGTTCTTG
ACGAGGCCGAACGTTCTCTGCACGATGCATTATGTGTCGTTCGGTCAATA
GTACACAAGCAGTACCTTATCCCTGGAGGAGGAGCTCCCGAAACTGAAGT
TTCGGTGCTGTTGTCTAAAGCTGCAAAGGCAACAACTGGTATGGAAGCGT
ACTGTATCGAAGCTTATGCAGAGGCGCTAAATGTTGTTCCATTCACCCTG
GCCGAAAATGCGGGGCTGCAACCTGTAGAGATTGTAACCGAGCTTCGACG
CCGCCACGCCGCTGGGGAATCTGGCGCCGGGATCAACGTGAGCAAAGGTG
CTGTGACAAATATAAAGGATGAGGACGTGGTAATGCCATTGTTGGTTTTC
AGTTCAGCGCTATCGCTCGCCACTGAATGTGTGCGTCAGCTTTTGAAGAT
CGATGACATTGTTATGGTAAGATAG
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protein sequence of Ggra609.t1

>Ggra609.t1 ID=Ggra609.t1|Name=Ggra609.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=575bp
MVAVQVSQNGAMTSSAPTGASGAGANMSTTTAISEKAKDVRRNNITAAKA
VADAIRTSLGPRGMDKMVTQEDGSVLITNDGATILEQMRVEHPAAKMLVQ
LSRSQDVVAGDGTTSVVVICGALLSAALELLANGIHPSAISDAFQLALVK
SMEIVNNMAVPVNLDDRGALIQAAKTSLNSKVVSQYSNLLAPIAVDAVLT
VKKAPQSNGGARVNGSPQHESIVHGVSSTSATSFVDLKHIRTVKKLGGTI
DDSELVDGIILHQHAARAGSNSVTKVQSAKVALIQFCLSPPKTDVENSVV
VQDYTAMDRILREERQYILGLCKKIKAAGCNVLLIQKSILRDATTDLSLH
FLGKMKIMVVTDIERDEVEFLSKSLGCVPIAGIETFTADKLAKVDLVEEV
SLGSEKLVRMSGIAKPTKETVSILVRGSNHLVLDEAERSLHDALCVVRSI
VHKQYLIPGGGAPETEVSVLLSKAAKATTGMEAYCIEAYAEALNVVPFTL
AENAGLQPVEIVTELRRRHAAGESGAGINVSKGAVTNIKDEDVVMPLLVF
SSALSLATECVRQLLKIDDIVMVR*
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mRNA from alignment at tig00000203_pilon:139839..141563-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra609.t1 ID=Ggra609.t1|Name=Ggra609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000203_pilon:139839..141563- (Gracilaria gracilis GNS1m male)
ATGGTAGCAGTACAAGTCTCGCAGAACGGGGCTATGACTTCCTCGGCTCC
GACGGGCGCGTCTGGTGCTGGCGCTAACATGTCTACCACCACCGCTATTT
CTGAAAAGGCCAAGGATGTGCGTCGGAACAATATCACCGCGGCAAAGGCT
GTGGCTGATGCGATTCGCACGTCGCTGGGCCCGCGCGGGATGGATAAGAT
GGTCACGCAGGAGGATGGATCAGTGCTGATTACCAATGATGGCGCTACTA
TCCTGGAGCAGATGAGGGTTGAACATCCGGCTGCTAAAATGCTTGTTCAG
TTGTCCAGATCTCAGGATGTTGTTGCTGGTGATGGTACCACTTCCGTTGT
TGTTATTTGCGGTGCTTTGCTCAGCGCTGCCTTGGAGCTGCTGGCTAATG
GCATTCACCCTTCGGCTATCAGTGATGCTTTTCAGCTTGCGTTGGTCAAG
TCTATGGAGATTGTCAATAATATGGCTGTTCCGGTTAATCTTGACGATAG
AGGCGCTCTTATTCAAGCTGCCAAGACCAGTTTAAACTCCAAGGTTGTCA
GTCAGTATTCAAATTTATTGGCTCCGATTGCTGTTGACGCAGTGCTTACG
GTCAAGAAAGCTCCGCAATCTAATGGAGGTGCTAGAGTGAATGGCAGCCC
TCAACATGAATCGATTGTACATGGAGTTTCTTCCACTTCTGCCACTTCTT
TTGTCGATTTGAAACATATTCGTACTGTGAAGAAGCTTGGCGGTACAATC
GATGATTCTGAGCTTGTCGATGGAATTATTCTTCACCAACACGCTGCAAG
GGCGGGATCCAACTCCGTTACAAAAGTACAAAGCGCAAAAGTTGCGCTCA
TTCAATTCTGCCTCAGCCCTCCGAAGACAGATGTTGAAAACTCAGTCGTG
GTACAGGATTACACCGCTATGGATCGCATTCTTCGCGAGGAACGTCAATA
TATTCTTGGTTTGTGTAAGAAGATCAAGGCAGCTGGATGTAATGTGTTGT
TAATTCAAAAGAGCATTTTGAGAGATGCTACTACGGATCTAAGTCTTCAT
TTCTTGGGCAAGATGAAGATTATGGTTGTAACAGATATCGAGAGAGATGA
AGTCGAATTCTTGTCAAAGAGTCTTGGTTGCGTTCCAATTGCGGGTATTG
AGACTTTCACAGCCGATAAGTTGGCAAAGGTTGATCTCGTCGAAGAGGTA
TCTCTCGGATCAGAAAAACTAGTTCGCATGTCTGGTATTGCGAAACCTAC
AAAGGAAACAGTTTCAATTCTGGTACGAGGGTCGAATCATCTGGTTCTTG
ACGAGGCCGAACGTTCTCTGCACGATGCATTATGTGTCGTTCGGTCAATA
GTACACAAGCAGTACCTTATCCCTGGAGGAGGAGCTCCCGAAACTGAAGT
TTCGGTGCTGTTGTCTAAAGCTGCAAAGGCAACAACTGGTATGGAAGCGT
ACTGTATCGAAGCTTATGCAGAGGCGCTAAATGTTGTTCCATTCACCCTG
GCCGAAAATGCGGGGCTGCAACCTGTAGAGATTGTAACCGAGCTTCGACG
CCGCCACGCCGCTGGGGAATCTGGCGCCGGGATCAACGTGAGCAAAGGTG
CTGTGACAAATATAAAGGATGAGGACGTGGTAATGCCATTGTTGGTTTTC
AGTTCAGCGCTATCGCTCGCCACTGAATGTGTGCGTCAGCTTTTGAAGAT
CGATGACATTGTTATGGTAAGATAG
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Coding sequence (CDS) from alignment at tig00000203_pilon:139839..141563-

>Ggra609.t1 ID=Ggra609.t1|Name=Ggra609.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1725bp|location=Sequence derived from alignment at tig00000203_pilon:139839..141563- (Gracilaria gracilis GNS1m male)
ATGGTAGCAGTACAAGTCTCGCAGAACGGGGCTATGACTTCCTCGGCTCC
GACGGGCGCGTCTGGTGCTGGCGCTAACATGTCTACCACCACCGCTATTT
CTGAAAAGGCCAAGGATGTGCGTCGGAACAATATCACCGCGGCAAAGGCT
GTGGCTGATGCGATTCGCACGTCGCTGGGCCCGCGCGGGATGGATAAGAT
GGTCACGCAGGAGGATGGATCAGTGCTGATTACCAATGATGGCGCTACTA
TCCTGGAGCAGATGAGGGTTGAACATCCGGCTGCTAAAATGCTTGTTCAG
TTGTCCAGATCTCAGGATGTTGTTGCTGGTGATGGTACCACTTCCGTTGT
TGTTATTTGCGGTGCTTTGCTCAGCGCTGCCTTGGAGCTGCTGGCTAATG
GCATTCACCCTTCGGCTATCAGTGATGCTTTTCAGCTTGCGTTGGTCAAG
TCTATGGAGATTGTCAATAATATGGCTGTTCCGGTTAATCTTGACGATAG
AGGCGCTCTTATTCAAGCTGCCAAGACCAGTTTAAACTCCAAGGTTGTCA
GTCAGTATTCAAATTTATTGGCTCCGATTGCTGTTGACGCAGTGCTTACG
GTCAAGAAAGCTCCGCAATCTAATGGAGGTGCTAGAGTGAATGGCAGCCC
TCAACATGAATCGATTGTACATGGAGTTTCTTCCACTTCTGCCACTTCTT
TTGTCGATTTGAAACATATTCGTACTGTGAAGAAGCTTGGCGGTACAATC
GATGATTCTGAGCTTGTCGATGGAATTATTCTTCACCAACACGCTGCAAG
GGCGGGATCCAACTCCGTTACAAAAGTACAAAGCGCAAAAGTTGCGCTCA
TTCAATTCTGCCTCAGCCCTCCGAAGACAGATGTTGAAAACTCAGTCGTG
GTACAGGATTACACCGCTATGGATCGCATTCTTCGCGAGGAACGTCAATA
TATTCTTGGTTTGTGTAAGAAGATCAAGGCAGCTGGATGTAATGTGTTGT
TAATTCAAAAGAGCATTTTGAGAGATGCTACTACGGATCTAAGTCTTCAT
TTCTTGGGCAAGATGAAGATTATGGTTGTAACAGATATCGAGAGAGATGA
AGTCGAATTCTTGTCAAAGAGTCTTGGTTGCGTTCCAATTGCGGGTATTG
AGACTTTCACAGCCGATAAGTTGGCAAAGGTTGATCTCGTCGAAGAGGTA
TCTCTCGGATCAGAAAAACTAGTTCGCATGTCTGGTATTGCGAAACCTAC
AAAGGAAACAGTTTCAATTCTGGTACGAGGGTCGAATCATCTGGTTCTTG
ACGAGGCCGAACGTTCTCTGCACGATGCATTATGTGTCGTTCGGTCAATA
GTACACAAGCAGTACCTTATCCCTGGAGGAGGAGCTCCCGAAACTGAAGT
TTCGGTGCTGTTGTCTAAAGCTGCAAAGGCAACAACTGGTATGGAAGCGT
ACTGTATCGAAGCTTATGCAGAGGCGCTAAATGTTGTTCCATTCACCCTG
GCCGAAAATGCGGGGCTGCAACCTGTAGAGATTGTAACCGAGCTTCGACG
CCGCCACGCCGCTGGGGAATCTGGCGCCGGGATCAACGTGAGCAAAGGTG
CTGTGACAAATATAAAGGATGAGGACGTGGTAATGCCATTGTTGGTTTTC
AGTTCAGCGCTATCGCTCGCCACTGAATGTGTGCGTCAGCTTTTGAAGAT
CGATGACATTGTTATGGTAAGATAG
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