Ggra6089.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6089.t1
Unique Name	Ggra6089.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	750

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:519006..521255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703199.1
PFAMs	ABC1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08869
Evalue	5.22e-208
EggNOG OGs	COG0661@1\|root,KOG1235@2759\|Eukaryota
Description	regulation of tocopherol cyclase activity
COG category	E
BRITE	ko00000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6089	Ggra6089	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 519006..521255 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6089.t1.start1	Ggra6089.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 519006..519008 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6089.t1.CDS1	Ggra6089.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 519006..521255 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6089.t1.exon1	Ggra6089.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 519006..521255 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6089.t1.stop1	Ggra6089.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 521253..521255 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6089.t1	Ggra6089.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 519006..521255 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:519006..521255+
coding sequence from alignment at tig00000045_pilon:519006..521255+

mRNA sequence

>Ggra6089.t1 ID=Ggra6089.t1|Name=Ggra6089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp
MSACYRATLGLRPLGFVTSGSISQTKKFISIPLSTRGSSRRRASYRVKST
PAPRAALALPEVRKHENLQPTIRIANVSSIGGDDTGLPLEFDQEAIEKYW
NKRGTALAKRLAEVTAIFTPWIARITADAAAGTLKKNGAKRAAELREVLT
TLGPTFVKLGQALSVRPDIIGPEAMNELRLLCDAVPSFPNEIAFQMMEEE
LGRPVDEIYSEISEKPIAAASLGQVYKARLRSNGKEVAVKVQRPDMLRKV
SLDLYCMKRVARLVEMVQAQFTAAQTDYTSLLLEWSKGTYKELDYENEAE
NSRRFASLVQARLPDVYVPMVYDEYTSRKVLTMEWINGKKLSDCNPEQIN
ALVSKGVECFLFQLLSAGFFHADPHTGNLIRLDNGQLCVIDFGLMAVIDK
EEMDAMVSAIVHLANRDWPRVIEDFVVLKFLPADIDTSKVEPVIGAILDQ
ALEGGGANSINFQSLSEELATVTFDFPFSIPPAFALLLRALSVLEGIALV
GDPQFKLIMESFPFVSRLIMTDRSPALRTALREILYKDGSFSPRRLRVLL
DSSQGIINEGDAFVDFDTLSNNSKISRDAVDFLFSEEGLLIREILVEELA
KGIDVYVRDAYHRTAVSFERSVPAPFRGFLRTPTLAVPLIPIPLMLSPEP
FFALPPVDKSERAFLDNLGEIFEWVATDAVSSGVFQPNVILKLLPEVVAK
SSVIGRQVAGRLGETFLRRVFEDLLRGNGEVINGRRRITFSEKRASEGR*

spliced messenger RNA

>Ggra6089.t1 ID=Ggra6089.t1|Name=Ggra6089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2250bp|location=Sequence derived from alignment at tig00000045_pilon:519006..521255+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCTTGTTATCGCGCCACGCTTGGGCTCAGACCACTGGGATTTGT
CACGTCTGGTTCGATTTCTCAAACGAAGAAGTTCATATCCATCCCTTTAT
CTACTCGTGGCTCATCACGACGACGCGCCTCATACCGCGTGAAATCAACC
CCAGCCCCAAGAGCTGCCCTAGCGCTCCCTGAAGTCCGTAAGCACGAAAA
CCTACAACCCACAATACGTATTGCAAATGTTTCGAGTATTGGCGGCGATG
ATACGGGGCTTCCGCTTGAATTCGATCAGGAAGCTATTGAAAAGTATTGG
AACAAACGCGGCACAGCGTTGGCAAAGCGTTTGGCAGAGGTGACCGCAAT
CTTCACGCCATGGATCGCTCGAATAACAGCTGATGCAGCCGCGGGAACTC
TCAAGAAGAATGGCGCAAAGCGAGCTGCGGAACTGAGGGAAGTGCTTACT
ACTTTGGGACCCACGTTCGTCAAACTGGGACAGGCGCTGTCGGTACGCCC
AGACATTATTGGTCCCGAGGCAATGAATGAACTTCGCCTACTCTGTGATG
CCGTTCCATCGTTTCCGAATGAAATTGCATTCCAGATGATGGAAGAGGAG
TTAGGCCGTCCAGTTGATGAAATCTACTCGGAGATATCTGAGAAACCGAT
TGCCGCAGCTTCACTCGGGCAAGTGTACAAGGCACGATTGAGGAGCAATG
GAAAGGAAGTTGCGGTTAAAGTACAGCGCCCTGACATGTTACGTAAAGTC
AGTTTGGACTTGTACTGTATGAAGAGAGTTGCTCGTCTAGTCGAGATGGT
TCAAGCACAATTTACCGCAGCTCAGACCGACTACACCAGTCTTCTTCTGG
AATGGTCGAAGGGCACGTACAAGGAACTGGATTACGAAAACGAAGCAGAG
AACTCACGAAGGTTTGCAAGTCTCGTCCAAGCTCGTTTACCGGATGTATA
CGTGCCCATGGTCTACGATGAGTACACTAGTCGCAAGGTGCTCACCATGG
AGTGGATTAACGGGAAGAAGTTATCCGATTGCAATCCAGAACAAATTAAT
GCCCTAGTATCCAAGGGCGTAGAGTGCTTCCTGTTTCAGCTTCTCTCTGC
AGGCTTTTTCCACGCAGATCCGCACACTGGCAATTTGATTCGCTTGGATA
ACGGGCAGTTATGTGTTATTGACTTCGGTCTAATGGCTGTGATTGACAAA
GAAGAGATGGACGCAATGGTGTCGGCTATTGTTCACCTGGCAAACAGGGA
CTGGCCCAGGGTTATTGAGGACTTCGTAGTTCTGAAGTTCCTGCCCGCAG
ATATTGACACTTCGAAGGTGGAACCTGTAATTGGGGCCATTCTCGATCAA
GCTCTTGAGGGTGGTGGAGCGAACTCTATCAACTTCCAGTCCTTATCCGA
GGAGTTAGCCACTGTAACGTTTGACTTCCCCTTCTCGATTCCTCCCGCTT
TTGCCCTTCTCCTGCGCGCACTGTCTGTCTTAGAGGGTATTGCACTCGTC
GGTGATCCTCAGTTTAAGCTGATCATGGAATCCTTTCCGTTCGTATCCCG
TCTGATAATGACAGACCGCAGTCCAGCTTTGCGAACTGCATTAAGGGAGA
TTTTGTACAAGGACGGCAGTTTCAGCCCGAGACGGTTACGAGTTCTTCTT
GACTCATCTCAAGGAATCATTAATGAGGGGGATGCGTTTGTTGATTTCGA
TACTCTAAGCAACAACTCCAAAATCTCACGGGATGCAGTTGACTTTCTTT
TTAGTGAAGAAGGGCTCTTAATTCGTGAAATACTTGTGGAAGAATTGGCC
AAAGGGATCGATGTATATGTCAGAGACGCATACCATCGCACTGCAGTATC
CTTCGAACGGTCTGTTCCCGCTCCATTTCGTGGGTTCTTGCGTACTCCAA
CTCTAGCCGTCCCCCTTATCCCCATACCGCTTATGCTCAGTCCCGAACCT
TTCTTCGCTCTACCTCCTGTTGACAAGTCAGAAAGGGCTTTCCTCGACAA
TCTGGGTGAAATTTTCGAATGGGTAGCAACAGACGCGGTTTCTTCGGGAG
TTTTTCAACCTAATGTGATTCTTAAGTTGCTTCCAGAAGTTGTTGCCAAG
TCTAGCGTAATCGGACGACAGGTGGCTGGCCGACTCGGTGAAACTTTTCT
GAGGAGAGTTTTCGAAGACCTTCTTCGTGGAAATGGTGAGGTAATCAACG
GACGCAGACGAATTACTTTCTCAGAGAAGCGTGCATCTGAAGGGCGCTAA

protein sequence of Ggra6089.t1

>Ggra6089.t1 ID=Ggra6089.t1|Name=Ggra6089.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=750bp
MSACYRATLGLRPLGFVTSGSISQTKKFISIPLSTRGSSRRRASYRVKST
PAPRAALALPEVRKHENLQPTIRIANVSSIGGDDTGLPLEFDQEAIEKYW
NKRGTALAKRLAEVTAIFTPWIARITADAAAGTLKKNGAKRAAELREVLT
TLGPTFVKLGQALSVRPDIIGPEAMNELRLLCDAVPSFPNEIAFQMMEEE
LGRPVDEIYSEISEKPIAAASLGQVYKARLRSNGKEVAVKVQRPDMLRKV
SLDLYCMKRVARLVEMVQAQFTAAQTDYTSLLLEWSKGTYKELDYENEAE
NSRRFASLVQARLPDVYVPMVYDEYTSRKVLTMEWINGKKLSDCNPEQIN
ALVSKGVECFLFQLLSAGFFHADPHTGNLIRLDNGQLCVIDFGLMAVIDK
EEMDAMVSAIVHLANRDWPRVIEDFVVLKFLPADIDTSKVEPVIGAILDQ
ALEGGGANSINFQSLSEELATVTFDFPFSIPPAFALLLRALSVLEGIALV
GDPQFKLIMESFPFVSRLIMTDRSPALRTALREILYKDGSFSPRRLRVLL
DSSQGIINEGDAFVDFDTLSNNSKISRDAVDFLFSEEGLLIREILVEELA
KGIDVYVRDAYHRTAVSFERSVPAPFRGFLRTPTLAVPLIPIPLMLSPEP
FFALPPVDKSERAFLDNLGEIFEWVATDAVSSGVFQPNVILKLLPEVVAK
SSVIGRQVAGRLGETFLRRVFEDLLRGNGEVINGRRRITFSEKRASEGR*

mRNA from alignment at tig00000045_pilon:519006..521255+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6089.t1 ID=Ggra6089.t1|Name=Ggra6089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2250bp|location=Sequence derived from alignment at tig00000045_pilon:519006..521255+ (Gracilaria gracilis GNS1m male)
ATGTCGGCTTGTTATCGCGCCACGCTTGGGCTCAGACCACTGGGATTTGT
CACGTCTGGTTCGATTTCTCAAACGAAGAAGTTCATATCCATCCCTTTAT
CTACTCGTGGCTCATCACGACGACGCGCCTCATACCGCGTGAAATCAACC
CCAGCCCCAAGAGCTGCCCTAGCGCTCCCTGAAGTCCGTAAGCACGAAAA
CCTACAACCCACAATACGTATTGCAAATGTTTCGAGTATTGGCGGCGATG
ATACGGGGCTTCCGCTTGAATTCGATCAGGAAGCTATTGAAAAGTATTGG
AACAAACGCGGCACAGCGTTGGCAAAGCGTTTGGCAGAGGTGACCGCAAT
CTTCACGCCATGGATCGCTCGAATAACAGCTGATGCAGCCGCGGGAACTC
TCAAGAAGAATGGCGCAAAGCGAGCTGCGGAACTGAGGGAAGTGCTTACT
ACTTTGGGACCCACGTTCGTCAAACTGGGACAGGCGCTGTCGGTACGCCC
AGACATTATTGGTCCCGAGGCAATGAATGAACTTCGCCTACTCTGTGATG
CCGTTCCATCGTTTCCGAATGAAATTGCATTCCAGATGATGGAAGAGGAG
TTAGGCCGTCCAGTTGATGAAATCTACTCGGAGATATCTGAGAAACCGAT
TGCCGCAGCTTCACTCGGGCAAGTGTACAAGGCACGATTGAGGAGCAATG
GAAAGGAAGTTGCGGTTAAAGTACAGCGCCCTGACATGTTACGTAAAGTC
AGTTTGGACTTGTACTGTATGAAGAGAGTTGCTCGTCTAGTCGAGATGGT
TCAAGCACAATTTACCGCAGCTCAGACCGACTACACCAGTCTTCTTCTGG
AATGGTCGAAGGGCACGTACAAGGAACTGGATTACGAAAACGAAGCAGAG
AACTCACGAAGGTTTGCAAGTCTCGTCCAAGCTCGTTTACCGGATGTATA
CGTGCCCATGGTCTACGATGAGTACACTAGTCGCAAGGTGCTCACCATGG
AGTGGATTAACGGGAAGAAGTTATCCGATTGCAATCCAGAACAAATTAAT
GCCCTAGTATCCAAGGGCGTAGAGTGCTTCCTGTTTCAGCTTCTCTCTGC
AGGCTTTTTCCACGCAGATCCGCACACTGGCAATTTGATTCGCTTGGATA
ACGGGCAGTTATGTGTTATTGACTTCGGTCTAATGGCTGTGATTGACAAA
GAAGAGATGGACGCAATGGTGTCGGCTATTGTTCACCTGGCAAACAGGGA
CTGGCCCAGGGTTATTGAGGACTTCGTAGTTCTGAAGTTCCTGCCCGCAG
ATATTGACACTTCGAAGGTGGAACCTGTAATTGGGGCCATTCTCGATCAA
GCTCTTGAGGGTGGTGGAGCGAACTCTATCAACTTCCAGTCCTTATCCGA
GGAGTTAGCCACTGTAACGTTTGACTTCCCCTTCTCGATTCCTCCCGCTT
TTGCCCTTCTCCTGCGCGCACTGTCTGTCTTAGAGGGTATTGCACTCGTC
GGTGATCCTCAGTTTAAGCTGATCATGGAATCCTTTCCGTTCGTATCCCG
TCTGATAATGACAGACCGCAGTCCAGCTTTGCGAACTGCATTAAGGGAGA
TTTTGTACAAGGACGGCAGTTTCAGCCCGAGACGGTTACGAGTTCTTCTT
GACTCATCTCAAGGAATCATTAATGAGGGGGATGCGTTTGTTGATTTCGA
TACTCTAAGCAACAACTCCAAAATCTCACGGGATGCAGTTGACTTTCTTT
TTAGTGAAGAAGGGCTCTTAATTCGTGAAATACTTGTGGAAGAATTGGCC
AAAGGGATCGATGTATATGTCAGAGACGCATACCATCGCACTGCAGTATC
CTTCGAACGGTCTGTTCCCGCTCCATTTCGTGGGTTCTTGCGTACTCCAA
CTCTAGCCGTCCCCCTTATCCCCATACCGCTTATGCTCAGTCCCGAACCT
TTCTTCGCTCTACCTCCTGTTGACAAGTCAGAAAGGGCTTTCCTCGACAA
TCTGGGTGAAATTTTCGAATGGGTAGCAACAGACGCGGTTTCTTCGGGAG
TTTTTCAACCTAATGTGATTCTTAAGTTGCTTCCAGAAGTTGTTGCCAAG
TCTAGCGTAATCGGACGACAGGTGGCTGGCCGACTCGGTGAAACTTTTCT
GAGGAGAGTTTTCGAAGACCTTCTTCGTGGAAATGGTGAGGTAATCAACG
GACGCAGACGAATTACTTTCTCAGAGAAGCGTGCATCTGAAGGGCGCTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:519006..521255+

>Ggra6089.t1 ID=Ggra6089.t1|Name=Ggra6089.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2250bp|location=Sequence derived from alignment at tig00000045_pilon:519006..521255+ (Gracilaria gracilis GNS1m male)
ATGTCGGCTTGTTATCGCGCCACGCTTGGGCTCAGACCACTGGGATTTGT
CACGTCTGGTTCGATTTCTCAAACGAAGAAGTTCATATCCATCCCTTTAT
CTACTCGTGGCTCATCACGACGACGCGCCTCATACCGCGTGAAATCAACC
CCAGCCCCAAGAGCTGCCCTAGCGCTCCCTGAAGTCCGTAAGCACGAAAA
CCTACAACCCACAATACGTATTGCAAATGTTTCGAGTATTGGCGGCGATG
ATACGGGGCTTCCGCTTGAATTCGATCAGGAAGCTATTGAAAAGTATTGG
AACAAACGCGGCACAGCGTTGGCAAAGCGTTTGGCAGAGGTGACCGCAAT
CTTCACGCCATGGATCGCTCGAATAACAGCTGATGCAGCCGCGGGAACTC
TCAAGAAGAATGGCGCAAAGCGAGCTGCGGAACTGAGGGAAGTGCTTACT
ACTTTGGGACCCACGTTCGTCAAACTGGGACAGGCGCTGTCGGTACGCCC
AGACATTATTGGTCCCGAGGCAATGAATGAACTTCGCCTACTCTGTGATG
CCGTTCCATCGTTTCCGAATGAAATTGCATTCCAGATGATGGAAGAGGAG
TTAGGCCGTCCAGTTGATGAAATCTACTCGGAGATATCTGAGAAACCGAT
TGCCGCAGCTTCACTCGGGCAAGTGTACAAGGCACGATTGAGGAGCAATG
GAAAGGAAGTTGCGGTTAAAGTACAGCGCCCTGACATGTTACGTAAAGTC
AGTTTGGACTTGTACTGTATGAAGAGAGTTGCTCGTCTAGTCGAGATGGT
TCAAGCACAATTTACCGCAGCTCAGACCGACTACACCAGTCTTCTTCTGG
AATGGTCGAAGGGCACGTACAAGGAACTGGATTACGAAAACGAAGCAGAG
AACTCACGAAGGTTTGCAAGTCTCGTCCAAGCTCGTTTACCGGATGTATA
CGTGCCCATGGTCTACGATGAGTACACTAGTCGCAAGGTGCTCACCATGG
AGTGGATTAACGGGAAGAAGTTATCCGATTGCAATCCAGAACAAATTAAT
GCCCTAGTATCCAAGGGCGTAGAGTGCTTCCTGTTTCAGCTTCTCTCTGC
AGGCTTTTTCCACGCAGATCCGCACACTGGCAATTTGATTCGCTTGGATA
ACGGGCAGTTATGTGTTATTGACTTCGGTCTAATGGCTGTGATTGACAAA
GAAGAGATGGACGCAATGGTGTCGGCTATTGTTCACCTGGCAAACAGGGA
CTGGCCCAGGGTTATTGAGGACTTCGTAGTTCTGAAGTTCCTGCCCGCAG
ATATTGACACTTCGAAGGTGGAACCTGTAATTGGGGCCATTCTCGATCAA
GCTCTTGAGGGTGGTGGAGCGAACTCTATCAACTTCCAGTCCTTATCCGA
GGAGTTAGCCACTGTAACGTTTGACTTCCCCTTCTCGATTCCTCCCGCTT
TTGCCCTTCTCCTGCGCGCACTGTCTGTCTTAGAGGGTATTGCACTCGTC
GGTGATCCTCAGTTTAAGCTGATCATGGAATCCTTTCCGTTCGTATCCCG
TCTGATAATGACAGACCGCAGTCCAGCTTTGCGAACTGCATTAAGGGAGA
TTTTGTACAAGGACGGCAGTTTCAGCCCGAGACGGTTACGAGTTCTTCTT
GACTCATCTCAAGGAATCATTAATGAGGGGGATGCGTTTGTTGATTTCGA
TACTCTAAGCAACAACTCCAAAATCTCACGGGATGCAGTTGACTTTCTTT
TTAGTGAAGAAGGGCTCTTAATTCGTGAAATACTTGTGGAAGAATTGGCC
AAAGGGATCGATGTATATGTCAGAGACGCATACCATCGCACTGCAGTATC
CTTCGAACGGTCTGTTCCCGCTCCATTTCGTGGGTTCTTGCGTACTCCAA
CTCTAGCCGTCCCCCTTATCCCCATACCGCTTATGCTCAGTCCCGAACCT
TTCTTCGCTCTACCTCCTGTTGACAAGTCAGAAAGGGCTTTCCTCGACAA
TCTGGGTGAAATTTTCGAATGGGTAGCAACAGACGCGGTTTCTTCGGGAG
TTTTTCAACCTAATGTGATTCTTAAGTTGCTTCCAGAAGTTGTTGCCAAG
TCTAGCGTAATCGGACGACAGGTGGCTGGCCGACTCGGTGAAACTTTTCT
GAGGAGAGTTTTCGAAGACCTTCTTCGTGGAAATGGTGAGGTAATCAACG
GACGCAGACGAATTACTTTCTCAGAGAAGCGTGCATCTGAAGGGCGCTAA