Ggra6086.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6086.t1
Unique Name	Ggra6086.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	434

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:512387..513688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	795797.C497_07609
PFAMs	Sugar_tr
Max annot lvl	183963\|Halobacteria
Evalue	1.28e-54
EggNOG OGs	arCOG02685@1\|root,arCOG02685@2157\|Archaea,2XV10@28890\|Euryarchaeota,23SHT@183963\|Halobacteria
Description	COG0477 Permeases of the major facilitator superfamily
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6086	Ggra6086	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 512387..513688 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6086.t1.start1	Ggra6086.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 512387..512389 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6086.t1.CDS1	Ggra6086.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 512387..513688 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6086.t1.exon1	Ggra6086.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 512387..513688 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6086.t1.stop1	Ggra6086.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 513686..513688 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6086.t1	Ggra6086.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 512387..513688 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:512387..513688+
coding sequence from alignment at tig00000045_pilon:512387..513688+

mRNA sequence

>Ggra6086.t1 ID=Ggra6086.t1|Name=Ggra6086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MLPRYRPSSQNKRRANIPSIRLWTICLSANLGGLLVGFHLAVFSGVLEMP
SFASEMPFELTPYVKSVITSALVVGFIAGAIPAGPLCDKLGRRKTLMITA
LLYLVSSIAMAFSRTLLQLIVFRFIAGLGYAVANVTCTLYTAEIAPPEIR
GVLVNLYQLLITIGIFSAQTVNALMWENGHWSLPLLIAAIPAVIMLFLVA
LFVSESHVWESNPCSTEPKMSIIEVLKNPSGRKRLVIGSGLAIAQQMTGI
NAVIFFGPALLSDVLKLHTSSAPFVAAACVGAANFVATIASLIVVERYGR
RVLLLTAGPPMICSLLVLGAMRSEIIPVYGILGLGALVLFVVSFAITYGP
VPFLIIAEIFPLAYKGIAMGFCNMLLATFSLGIGASFLSALDTVGGFVYL
SFAACVAFSSWFVYTKVPETKNLTLEEVDQLLS*

spliced messenger RNA

>Ggra6086.t1 ID=Ggra6086.t1|Name=Ggra6086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000045_pilon:512387..513688+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCTCGATATCGCCCATCTTCACAGAACAAACGACGAGCTAATAT
TCCTTCGATACGACTATGGACCATCTGCCTCTCTGCGAACCTGGGCGGTT
TGCTGGTGGGTTTCCACCTTGCAGTCTTTTCTGGAGTTCTTGAGATGCCG
TCATTTGCGAGCGAGATGCCTTTTGAGCTGACACCATACGTTAAATCCGT
CATTACGTCTGCACTTGTTGTGGGTTTTATTGCTGGGGCCATTCCGGCAG
GGCCTCTTTGCGACAAATTGGGCCGTCGCAAAACGCTTATGATTACCGCA
TTGCTCTACTTGGTTTCCTCTATTGCCATGGCCTTTTCTAGAACTCTGCT
ACAGCTCATAGTCTTTAGATTTATCGCAGGCCTTGGTTACGCAGTGGCGA
ACGTTACCTGTACCCTCTACACAGCAGAGATAGCCCCGCCTGAAATACGA
GGGGTGTTGGTTAACTTGTACCAACTATTGATCACCATCGGTATTTTTTC
CGCGCAAACAGTGAACGCGCTTATGTGGGAAAATGGCCATTGGAGCCTAC
CTCTCTTGATCGCTGCGATACCTGCTGTCATCATGCTCTTTCTTGTTGCA
CTCTTTGTCTCCGAATCTCATGTGTGGGAGAGCAATCCGTGTTCAACGGA
GCCTAAAATGTCGATAATAGAAGTTTTGAAGAACCCATCAGGGCGGAAGA
GGCTGGTCATTGGAAGCGGGCTAGCCATAGCGCAGCAAATGACAGGTATC
AATGCCGTCATCTTCTTCGGACCGGCCTTGTTGTCAGATGTTCTCAAGCT
TCACACTTCGAGCGCCCCGTTTGTAGCCGCCGCCTGCGTGGGAGCCGCCA
ACTTCGTAGCCACGATTGCCTCGCTTATTGTCGTTGAAAGATATGGGCGA
CGAGTACTGCTGCTGACAGCTGGTCCCCCTATGATCTGTAGTCTGCTTGT
TCTTGGTGCAATGCGAAGTGAAATAATTCCGGTATACGGCATTCTTGGCT
TGGGAGCATTGGTATTGTTTGTAGTTTCTTTTGCGATAACATATGGGCCT
GTACCGTTCCTAATCATCGCAGAGATCTTCCCGTTAGCTTACAAGGGGAT
AGCGATGGGTTTCTGTAACATGTTGCTGGCGACATTTTCCCTTGGAATTG
GTGCCTCCTTCTTGTCTGCATTGGATACAGTTGGTGGATTCGTATACTTG
AGCTTTGCAGCATGTGTTGCCTTTAGCAGTTGGTTTGTATACACAAAAGT
CCCGGAAACAAAGAATTTGACTTTGGAGGAAGTGGATCAGCTATTGTCAT
GA

protein sequence of Ggra6086.t1

>Ggra6086.t1 ID=Ggra6086.t1|Name=Ggra6086.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MLPRYRPSSQNKRRANIPSIRLWTICLSANLGGLLVGFHLAVFSGVLEMP
SFASEMPFELTPYVKSVITSALVVGFIAGAIPAGPLCDKLGRRKTLMITA
LLYLVSSIAMAFSRTLLQLIVFRFIAGLGYAVANVTCTLYTAEIAPPEIR
GVLVNLYQLLITIGIFSAQTVNALMWENGHWSLPLLIAAIPAVIMLFLVA
LFVSESHVWESNPCSTEPKMSIIEVLKNPSGRKRLVIGSGLAIAQQMTGI
NAVIFFGPALLSDVLKLHTSSAPFVAAACVGAANFVATIASLIVVERYGR
RVLLLTAGPPMICSLLVLGAMRSEIIPVYGILGLGALVLFVVSFAITYGP
VPFLIIAEIFPLAYKGIAMGFCNMLLATFSLGIGASFLSALDTVGGFVYL
SFAACVAFSSWFVYTKVPETKNLTLEEVDQLLS*

mRNA from alignment at tig00000045_pilon:512387..513688+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6086.t1 ID=Ggra6086.t1|Name=Ggra6086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000045_pilon:512387..513688+ (Gracilaria gracilis GNS1m male)
ATGCTTCCTCGATATCGCCCATCTTCACAGAACAAACGACGAGCTAATAT
TCCTTCGATACGACTATGGACCATCTGCCTCTCTGCGAACCTGGGCGGTT
TGCTGGTGGGTTTCCACCTTGCAGTCTTTTCTGGAGTTCTTGAGATGCCG
TCATTTGCGAGCGAGATGCCTTTTGAGCTGACACCATACGTTAAATCCGT
CATTACGTCTGCACTTGTTGTGGGTTTTATTGCTGGGGCCATTCCGGCAG
GGCCTCTTTGCGACAAATTGGGCCGTCGCAAAACGCTTATGATTACCGCA
TTGCTCTACTTGGTTTCCTCTATTGCCATGGCCTTTTCTAGAACTCTGCT
ACAGCTCATAGTCTTTAGATTTATCGCAGGCCTTGGTTACGCAGTGGCGA
ACGTTACCTGTACCCTCTACACAGCAGAGATAGCCCCGCCTGAAATACGA
GGGGTGTTGGTTAACTTGTACCAACTATTGATCACCATCGGTATTTTTTC
CGCGCAAACAGTGAACGCGCTTATGTGGGAAAATGGCCATTGGAGCCTAC
CTCTCTTGATCGCTGCGATACCTGCTGTCATCATGCTCTTTCTTGTTGCA
CTCTTTGTCTCCGAATCTCATGTGTGGGAGAGCAATCCGTGTTCAACGGA
GCCTAAAATGTCGATAATAGAAGTTTTGAAGAACCCATCAGGGCGGAAGA
GGCTGGTCATTGGAAGCGGGCTAGCCATAGCGCAGCAAATGACAGGTATC
AATGCCGTCATCTTCTTCGGACCGGCCTTGTTGTCAGATGTTCTCAAGCT
TCACACTTCGAGCGCCCCGTTTGTAGCCGCCGCCTGCGTGGGAGCCGCCA
ACTTCGTAGCCACGATTGCCTCGCTTATTGTCGTTGAAAGATATGGGCGA
CGAGTACTGCTGCTGACAGCTGGTCCCCCTATGATCTGTAGTCTGCTTGT
TCTTGGTGCAATGCGAAGTGAAATAATTCCGGTATACGGCATTCTTGGCT
TGGGAGCATTGGTATTGTTTGTAGTTTCTTTTGCGATAACATATGGGCCT
GTACCGTTCCTAATCATCGCAGAGATCTTCCCGTTAGCTTACAAGGGGAT
AGCGATGGGTTTCTGTAACATGTTGCTGGCGACATTTTCCCTTGGAATTG
GTGCCTCCTTCTTGTCTGCATTGGATACAGTTGGTGGATTCGTATACTTG
AGCTTTGCAGCATGTGTTGCCTTTAGCAGTTGGTTTGTATACACAAAAGT
CCCGGAAACAAAGAATTTGACTTTGGAGGAAGTGGATCAGCTATTGTCAT
GA

Coding sequence (CDS) from alignment at tig00000045_pilon:512387..513688+

>Ggra6086.t1 ID=Ggra6086.t1|Name=Ggra6086.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000045_pilon:512387..513688+ (Gracilaria gracilis GNS1m male)
ATGCTTCCTCGATATCGCCCATCTTCACAGAACAAACGACGAGCTAATAT
TCCTTCGATACGACTATGGACCATCTGCCTCTCTGCGAACCTGGGCGGTT
TGCTGGTGGGTTTCCACCTTGCAGTCTTTTCTGGAGTTCTTGAGATGCCG
TCATTTGCGAGCGAGATGCCTTTTGAGCTGACACCATACGTTAAATCCGT
CATTACGTCTGCACTTGTTGTGGGTTTTATTGCTGGGGCCATTCCGGCAG
GGCCTCTTTGCGACAAATTGGGCCGTCGCAAAACGCTTATGATTACCGCA
TTGCTCTACTTGGTTTCCTCTATTGCCATGGCCTTTTCTAGAACTCTGCT
ACAGCTCATAGTCTTTAGATTTATCGCAGGCCTTGGTTACGCAGTGGCGA
ACGTTACCTGTACCCTCTACACAGCAGAGATAGCCCCGCCTGAAATACGA
GGGGTGTTGGTTAACTTGTACCAACTATTGATCACCATCGGTATTTTTTC
CGCGCAAACAGTGAACGCGCTTATGTGGGAAAATGGCCATTGGAGCCTAC
CTCTCTTGATCGCTGCGATACCTGCTGTCATCATGCTCTTTCTTGTTGCA
CTCTTTGTCTCCGAATCTCATGTGTGGGAGAGCAATCCGTGTTCAACGGA
GCCTAAAATGTCGATAATAGAAGTTTTGAAGAACCCATCAGGGCGGAAGA
GGCTGGTCATTGGAAGCGGGCTAGCCATAGCGCAGCAAATGACAGGTATC
AATGCCGTCATCTTCTTCGGACCGGCCTTGTTGTCAGATGTTCTCAAGCT
TCACACTTCGAGCGCCCCGTTTGTAGCCGCCGCCTGCGTGGGAGCCGCCA
ACTTCGTAGCCACGATTGCCTCGCTTATTGTCGTTGAAAGATATGGGCGA
CGAGTACTGCTGCTGACAGCTGGTCCCCCTATGATCTGTAGTCTGCTTGT
TCTTGGTGCAATGCGAAGTGAAATAATTCCGGTATACGGCATTCTTGGCT
TGGGAGCATTGGTATTGTTTGTAGTTTCTTTTGCGATAACATATGGGCCT
GTACCGTTCCTAATCATCGCAGAGATCTTCCCGTTAGCTTACAAGGGGAT
AGCGATGGGTTTCTGTAACATGTTGCTGGCGACATTTTCCCTTGGAATTG
GTGCCTCCTTCTTGTCTGCATTGGATACAGTTGGTGGATTCGTATACTTG
AGCTTTGCAGCATGTGTTGCCTTTAGCAGTTGGTTTGTATACACAAAAGT
CCCGGAAACAAAGAATTTGACTTTGGAGGAAGTGGATCAGCTATTGTCAT
GA