Ggra6080.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6080.t1
Unique Name	Ggra6080.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:494150..495130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005652002.1
Preferred name	RACK1
PFAMs	WD40
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K14753
KEGG Pathway	ko05162,map05162
Evalue	3.09e-155
EggNOG OGs	KOG0279@1\|root,KOG0279@2759\|Eukaryota,37HP9@33090\|Viridiplantae,34JNF@3041\|Chlorophyta
Description	component of 40S small ribosomal subunit
COG category	T
BRITE	ko00000,ko00001,ko03019,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6080	Ggra6080	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 494150..495130 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6080.t1.start1	Ggra6080.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 494150..494152 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6080.t1.CDS1	Ggra6080.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 494150..495130 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6080.t1.exon1	Ggra6080.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 494150..495130 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6080.t1.stop1	Ggra6080.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 495128..495130 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6080.t1	Ggra6080.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 494150..495130 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:494150..495130+
coding sequence from alignment at tig00000045_pilon:494150..495130+

mRNA sequence

>Ggra6080.t1 ID=Ggra6080.t1|Name=Ggra6080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MGETLSFRGYLKGHSGWVTAIAATVDPNDSDSPDIVLSASRDKTIIVWQL
TTDAEDQTSYGYPKRSLQGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQNHT
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPACISLAWS
SDGSTLFSGYTDNVIRVWGVGLGRGN*

spliced messenger RNA

>Ggra6080.t1 ID=Ggra6080.t1|Name=Ggra6080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000045_pilon:494150..495130+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAAACTTTATCGTTCCGCGGATACTTGAAGGGCCATTCCGGCTG
GGTCACCGCCATCGCCGCCACCGTCGACCCCAATGATAGCGACTCCCCGG
ACATTGTGCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAACTC
ACCACCGATGCCGAGGATCAGACCTCGTACGGATACCCCAAGAGGTCCCT
TCAAGGCCACGGTCACTTTGTGTCCGACGTTGTTTTGTCGTATGATGGCC
AGTTTGCCTTGTCCTCATCCTGGGATCACACTCTTCGTCTCTGGGACTTG
AACACCGGCAATACTACCAGGCGATTTGTTGGTCACACCAAGGACGTTCT
TTCTGTCGCTTTCTCTGCCGATAACCGTCAAATCGTCTCTGGATCGCGCG
ATCGAACCATCAAATTATGGAATACGCTTGGTGAATGTAAATACACCATT
CACGATGAGGGACATTCAGAGTGGGTTTCCTGCGTGCGTTTCTCTCCCTC
CACCCAGAACCCGCTCATTGTTTCGTGCGGATGGGATAAGTTGGTCAAGG
TATGGAACCTTACCAACTGCAAGCTCCGCACCAACCTTCAAAACCACACC
GGATATCTCAACGCCGTTACAGTATCTCCAGATGGCTCTCTGTGCGCGTC
GGGAGGTAAGGATGGTGTGGCCATGCTATGGGATTTGCAAGAAGGGAAGC
ACTTGTATTCCTTGGAAGCAAATGATATTATTCACGCCTTGTGTTTCTCA
CCCAATCGGTACTGGCTTTGCGCTGCTACCAATTCTTGCATTAAGATTTG
GGATTTGGAATCTAAGACAGTTGTCGATGAATTGCGCGACGACCAAGGTG
AAATTGGTAAGAAATCTGCTGTGCCAGCTTGCATCTCTCTTGCTTGGTCT
AGCGATGGATCTACGTTGTTCTCTGGATACACCGATAACGTTATTCGTGT
ATGGGGTGTTGGCCTCGGTCGAGGGAATTGA

protein sequence of Ggra6080.t1

>Ggra6080.t1 ID=Ggra6080.t1|Name=Ggra6080.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MGETLSFRGYLKGHSGWVTAIAATVDPNDSDSPDIVLSASRDKTIIVWQL
TTDAEDQTSYGYPKRSLQGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQNHT
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPACISLAWS
SDGSTLFSGYTDNVIRVWGVGLGRGN*

mRNA from alignment at tig00000045_pilon:494150..495130+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6080.t1 ID=Ggra6080.t1|Name=Ggra6080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000045_pilon:494150..495130+ (Gracilaria gracilis GNS1m male)
ATGGGAGAAACTTTATCGTTCCGCGGATACTTGAAGGGCCATTCCGGCTG
GGTCACCGCCATCGCCGCCACCGTCGACCCCAATGATAGCGACTCCCCGG
ACATTGTGCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAACTC
ACCACCGATGCCGAGGATCAGACCTCGTACGGATACCCCAAGAGGTCCCT
TCAAGGCCACGGTCACTTTGTGTCCGACGTTGTTTTGTCGTATGATGGCC
AGTTTGCCTTGTCCTCATCCTGGGATCACACTCTTCGTCTCTGGGACTTG
AACACCGGCAATACTACCAGGCGATTTGTTGGTCACACCAAGGACGTTCT
TTCTGTCGCTTTCTCTGCCGATAACCGTCAAATCGTCTCTGGATCGCGCG
ATCGAACCATCAAATTATGGAATACGCTTGGTGAATGTAAATACACCATT
CACGATGAGGGACATTCAGAGTGGGTTTCCTGCGTGCGTTTCTCTCCCTC
CACCCAGAACCCGCTCATTGTTTCGTGCGGATGGGATAAGTTGGTCAAGG
TATGGAACCTTACCAACTGCAAGCTCCGCACCAACCTTCAAAACCACACC
GGATATCTCAACGCCGTTACAGTATCTCCAGATGGCTCTCTGTGCGCGTC
GGGAGGTAAGGATGGTGTGGCCATGCTATGGGATTTGCAAGAAGGGAAGC
ACTTGTATTCCTTGGAAGCAAATGATATTATTCACGCCTTGTGTTTCTCA
CCCAATCGGTACTGGCTTTGCGCTGCTACCAATTCTTGCATTAAGATTTG
GGATTTGGAATCTAAGACAGTTGTCGATGAATTGCGCGACGACCAAGGTG
AAATTGGTAAGAAATCTGCTGTGCCAGCTTGCATCTCTCTTGCTTGGTCT
AGCGATGGATCTACGTTGTTCTCTGGATACACCGATAACGTTATTCGTGT
ATGGGGTGTTGGCCTCGGTCGAGGGAATTGA

Coding sequence (CDS) from alignment at tig00000045_pilon:494150..495130+

>Ggra6080.t1 ID=Ggra6080.t1|Name=Ggra6080.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000045_pilon:494150..495130+ (Gracilaria gracilis GNS1m male)
ATGGGAGAAACTTTATCGTTCCGCGGATACTTGAAGGGCCATTCCGGCTG
GGTCACCGCCATCGCCGCCACCGTCGACCCCAATGATAGCGACTCCCCGG
ACATTGTGCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAACTC
ACCACCGATGCCGAGGATCAGACCTCGTACGGATACCCCAAGAGGTCCCT
TCAAGGCCACGGTCACTTTGTGTCCGACGTTGTTTTGTCGTATGATGGCC
AGTTTGCCTTGTCCTCATCCTGGGATCACACTCTTCGTCTCTGGGACTTG
AACACCGGCAATACTACCAGGCGATTTGTTGGTCACACCAAGGACGTTCT
TTCTGTCGCTTTCTCTGCCGATAACCGTCAAATCGTCTCTGGATCGCGCG
ATCGAACCATCAAATTATGGAATACGCTTGGTGAATGTAAATACACCATT
CACGATGAGGGACATTCAGAGTGGGTTTCCTGCGTGCGTTTCTCTCCCTC
CACCCAGAACCCGCTCATTGTTTCGTGCGGATGGGATAAGTTGGTCAAGG
TATGGAACCTTACCAACTGCAAGCTCCGCACCAACCTTCAAAACCACACC
GGATATCTCAACGCCGTTACAGTATCTCCAGATGGCTCTCTGTGCGCGTC
GGGAGGTAAGGATGGTGTGGCCATGCTATGGGATTTGCAAGAAGGGAAGC
ACTTGTATTCCTTGGAAGCAAATGATATTATTCACGCCTTGTGTTTCTCA
CCCAATCGGTACTGGCTTTGCGCTGCTACCAATTCTTGCATTAAGATTTG
GGATTTGGAATCTAAGACAGTTGTCGATGAATTGCGCGACGACCAAGGTG
AAATTGGTAAGAAATCTGCTGTGCCAGCTTGCATCTCTCTTGCTTGGTCT
AGCGATGGATCTACGTTGTTCTCTGGATACACCGATAACGTTATTCGTGT
ATGGGGTGTTGGCCTCGGTCGAGGGAATTGA